Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007181

Physical Location & Seq

Genomic Coordinates Reverse (-)

30589942 .. 30594144

Gene Structure 4203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1165900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGGCGTCGACCAAGGTTATCAAGGTTCAATATGCGGAAACACTGAGGCGTTTCAATGCTAGTGTCAATGAGAACAATCAACTGGATCTTGACATGAGTGGATTGCGAGAAAAGATCTTGAGTCTTTTCAATCTCCACTCTGATGCTGACATCACTTTGGCGTACGTTGATGAAGATGGTGATGTAGTAACTCTTGTTGATGATGGTGATCTGCATGACACGATGAGGCAGAAGCTCAAATTCTTGAAGATATATGTACAGATTAACAAGGACAAATCTGCTAAGTCAAGTGGAAGTTCTACTCCTCTGAGGTCCCCTCAAGGTCAAACTCCAATACCAGATTTTAATGCTGATGTTGCCGAAGTTTTGAAGTCCCTGCCAGAGCCACTTCGGGAATTCGCTTCAAAGTTTCCTCTTGATTTGGCTTCAAAAGTTGCATCATCCAGTCCAGTGTTTGCGGAGCTTGTTGACTGCTTTTCGAAGATGGGCCTGTCGTACTTGATTCCAGATGCCCAGGTTCAGACCGCTGGAGATTCGGGCAAGCAAAACGGCGCCTCTAAGAGTCCCGTGGATCCCCCAGCTGCTTCTAAGTCAAATGATCTGAAGGGTGATGGCAGGTCAGAACCCATCTCTGCAGCTGAGGAATCAAGCACCAAAAAAGGTCAGGCGACAGACTCTGTGAATGTGACCAAGGATGTGGGGATGTCTGCTCCACCTCTTTATGCAACTCTTGATCTCAATTTCCTTCCTACAGATTCTAATCTATCAGGACCCATGCCCATTAATGATTCACCAGCTGGATCAAGTCTTCATACCAGTGATGCAAGGAAGGAGTCTAAGCAGCTTCCCAATGGTCGTCTCAATATTCAAAAGAAACTTCACAGCAAGAAGCCTTTTGGTTGTGGTCCGTCCGCAAGTTCAGCTCGTGCTGCAAGCAATATTCATGATATGATTAGTACTCGTTTCAACGAATGTCCATTTACAGGGACTCCCATTGCTAATGACTCAGCTACTCCTGCTGCCTGTCGGCGCATTCCTTTCAAAAGAAATCACTCCGAAGCGATGGGTGGTATGTTCCATACAGGTGTTCGCTGTGATGGCTGTGGTTGTCATCCAATTGTTGGACCTCGATTCAAGTCAATAGTGAAAGAGGATTATGACCTCTGCCGGATCTGTTTTGCCAGTAAGGGTAGTGCAACTGATTACATTAGGATTGACCACCCTATCTCTCATCGTCATCCACGGCCCTTCAAGGGGTTGTATGAGCAACCTCCATGGGTAGGTCCCCCAGTTATGCCAAAAATATTGAGAGGTAGTATGAAGCAAGGCCGCCCTAAGCTTGATAGCCGCTTTGTATTGGATGTCAATGTAATGGATGGTACCTTTATAGCCCCATCTACTCCATTTACCAAAATATGGCGGATGCGCAACAACGGTGGTATGGTGTGGCCTCAAGGAACAACACTTGTGTGGATTGGGGGCGACAGATTTAGCAATTCAGATTCAGTTGAAATAGAGATTCCTGCGGATGGTGTGCCGGCTGAAAATGAAATTGACATTGCCGTTGATTTTACTGCACCCGAGTCACCTGGTCGCTACATCTCATACTGGCGGATGGCAACCTCATCTGGCCAAAAGTTTGGGCAACGTGTTTGGGTCCTGATTCAGGTTGATACATCCTTGAAGGATTCATTCTTTGAGAGTTTTCAGGGTCTGAACTTGAATCTGCCCCCAAAAGAATCTGAAAAAATAGATGTGAACCTTCAACCAGCTGCTGGCAGTGACTTTCTCCAGCCTTCTGGTTCTAGCCCACTTAAGGAACCGGTGAAGCCCATGCCTACTGAGCAGCCTGGACATGACCAGGAGCTCCACTTCCCCATCAATGATAGCTTGCTGGTTGGCCACAGCGCTTCTGCCCCTACTGAGCCACAGGGTTCTTCAACTGTGATGTACCCCACTGTTGAGCCACAAGGTTCTTCAGCTGTGTTGTATCCCACTGTTAAGCCACAGGGTTCTTCAACCGTGTTGTATCCCACTGTCGATATCTTTGAACCATCTCCGCCCTCCCCCAAATTTTCACTTGTTGTCAATGCACCAGCATCATCTGAAGGGACCAGTTCAAACAATGCCGTGGAAGACACCATGCTGAAGGAGCTCGAGGCGATGGGATTTAAGCAGGTCAATTTGAACAAGGAGATTCTGCGTTTGAATGACTACAACATGGAGCAGTCTGTCGATGATCTCTGCGAGGTTTCTGACTGGGATCCCATCCTTGAAGAGCTGCAGGAAATGGGTTTCTGTGATACCGAAATGAACAAGAAGCTGCTGGTGAAGAACAATGGAAGCATCAAGCGTGTGGTTATGGATCTGATCAACGGGGAGCAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005829 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016043 GO:0016236 GO:0022607 GO:0031410 GO:0031982 GO:0032182 GO:0034622 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0051258 GO:0051259 GO:0061919 GO:0065003 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

N_BRCA1_IG PB1 ZZ

Protein Analysis

797

Amino Acids

86.8

Weight (kDa)

5.39

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	6 - 87	1.8e-09	PB1 domain
ZZ	PF00569	360 - 396	6.2e-09	Zinc finger, ZZ type
N_BRCA1_IG	PF16158	456 - 557	1.6e-33	Ig-like domain from next to BRCA1 gene
UBA_NBR1_C	PF24932	712 - 751	3.8e-22	Next to BRCA1 gene 1 protein-like, C-terminal UBA domain
UBA_NBR1_C	PF24932	754 - 791	8.9e-10	Next to BRCA1 gene 1 protein-like, C-terminal UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24690
fragaria_vesca	FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270
malus_domestica	MD06G1165900.v1.1 MD14G1171800.v1.1
prunus_persica	Prupe.5G165800_v2.0.a1 Prupe.5G165800_v2.0.a1 Prupe.5G165800_v2.0.a1
pyrus_communis	pycom06g14840 pycom14g14340
rosa_chinensis	RchiOBHm_Chr7g0192591
rosa_laevigata	RLG00000004349
rosa_multiflora	Rmu_sc0003108.1_g000043
rosa_roxburghii	Rroxscaffold_3G00262920
rosa_rugosa	Rorug07G0002500
rosa_samantha	Rh7AG126900 Rh7BG129200 Rh7CG131000 Rh7DG130300
rosa_wichuraiana	Rw7G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1427
Acc36I	ACCTGC	2 cut(s)	606, 2167
Acc65I	GGTACC	1 cut(s)	1379
AccB1I	GGYRCC	2 cut(s)	551, 1379
AccB7I	CCANNNNNTGG	3 cut(s)	1121, 1416, 1775
AccI	GTMKAC	1 cut(s)	8
AclWI	GGATC	8 cut(s)	93, 566, 579, 808, 1178, 2258, 2271, 2373
AcoI	YGGCCR	2 cut(s)	1630, 1900
AcsI	RAATTY	3 cut(s)	239, 395, 2072
AcuI	CTGAAG	4 cut(s)	623, 1962, 2127, 2168
AcyI	GRCGYC	2 cut(s)	5, 552
AfaI	GTAC	6 cut(s)	164, 258, 497, 958, 1381, 1952
AfeI	AGCGCT	1 cut(s)	1909
AflII	CTTAAG	1 cut(s)	1814
AflIII	ACRYGT	1 cut(s)	1648
AgeI	ACCGGT	1 cut(s)	1822
AjnI	CCWGG	4 cut(s)	513, 1588, 1849, 1860
AleI	CACNNNNGTG	1 cut(s)	1468
Alw21I	GWGCWC	2 cut(s)	1869, 2157
Alw26I	GTCTC	1 cut(s)	863
AlwI	GGATC	8 cut(s)	93, 566, 579, 808, 1178, 2258, 2271, 2373
AlwNI	CAGNNNCTG	3 cut(s)	677, 1714, 1775
Ama87I	CYCGRG	2 cut(s)	1580, 2156
Aor51HI	AGCGCT	1 cut(s)	1909
AoxI	GGCC	6 cut(s)	487, 1244, 1327, 1448, 1630, 1900
ApoI	RAATTY	3 cut(s)	239, 395, 2072
AseI	ATTAAT	1 cut(s)	783
AsiGI	ACCGGT	1 cut(s)	1822
Asp718I	GGTACC	1 cut(s)	1379
AspLEI	GCGC	4 cut(s)	554, 1032, 1428, 1910
AspS9I	GGNCC	9 cut(s)	312, 487, 770, 905, 1124, 1245, 1283, 1657, 2112
AsuHPI	GGTGA	7 cut(s)	191, 218, 620, 783, 1578, 1837, 2341
AsuII	TTCGAA	1 cut(s)	479
AvaI	CYCGRG	2 cut(s)	1580, 2156
AvaII	GGWCC	7 cut(s)	312, 770, 905, 1124, 1283, 1657, 2112
BalI	TGGCCA	2 cut(s)	1632, 1902
BamHI	GGATCC	2 cut(s)	571, 2263
BanI	GGYRCC	2 cut(s)	551, 1379
BanII	GRGCYC	2 cut(s)	1869, 2157
BauI	CACGAG	1 cut(s)	924
BbsI	GAAGAC	2 cut(s)	800, 2142
Bbv12I	GWGCWC	2 cut(s)	1869, 2157
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	9 cut(s)	568, 647, 853, 916, 1006, 1759, 1858, 2268, 2310
BceAI	ACGGC	4 cut(s)	565, 1259, 1547, 2114
BciT130I	CCWGG	4 cut(s)	515, 1590, 1851, 1862
BciVI	GTATCC	2 cut(s)	2001, 2040
BclI	TGATCA	1 cut(s)	2370
BcoDI	GTCTC	1 cut(s)	863
BfaI	CTAG	2 cut(s)	60, 1806
BfmI	CTRYAG	3 cut(s)	633, 750, 2282
BfoI	RGCGCY	2 cut(s)	555, 1911
BfrI	CTTAAG	1 cut(s)	1814
BfuAI	ACCTGC	2 cut(s)	606, 2167
BfuI	GTATCC	2 cut(s)	2001, 2040
BglII	AGATCT	1 cut(s)	114
BmcAI	AGTACT	1 cut(s)	958
Bme1390I	CCNGG	4 cut(s)	515, 1590, 1851, 1862
Bme18I	GGWCC	7 cut(s)	312, 770, 905, 1124, 1283, 1657, 2112
BmeT110I	CYCGRG	2 cut(s)	1580, 2156
BmgT120I	GGNCC	9 cut(s)	312, 487, 770, 905, 1124, 1245, 1283, 1657, 2112
BmrFI	CCNGG	4 cut(s)	515, 1590, 1851, 1862
BmrI	ACTGGG	2 cut(s)	1283, 2269
BmsI	GCATC	7 cut(s)	133, 446, 499, 811, 1413, 2108, 2355
BmuI	ACTGGG	2 cut(s)	1283, 2269
BpiI	GAAGAC	2 cut(s)	800, 2142
BplI	GAGNNNNNCTC	2 cut(s)	301, 333
BpmI	CTGGAG	2 cut(s)	549, 1775
Bpu10I	CCTNAGC	2 cut(s)	639, 1335
Bpu14I	TTCGAA	1 cut(s)	479
BpuEI	CTTGAG	3 cut(s)	139, 303, 1437
BsaBI	GATNNNNATC	2 cut(s)	207, 759
BsaHI	GRCGYC	2 cut(s)	5, 552
BsaJI	CCNNGG	7 cut(s)	12, 513, 567, 690, 1241, 1274, 2130
BsaWI	WCCGGW	1 cut(s)	1822
BsaXI	ACNNNNNCTCC	2 cut(s)	973, 1003
Bse118I	RCCGGY	2 cut(s)	1537, 1822
Bse1I	ACTGG	9 cut(s)	87, 444, 449, 816, 1182, 1289, 1613, 2115, 2264
Bse3DI	GCAATG	2 cut(s)	993, 1557
Bse8I	GATNNNNATC	2 cut(s)	207, 759
BseBI	CCWGG	4 cut(s)	515, 1590, 1851, 1862
BseDI	CCNNGG	7 cut(s)	12, 513, 567, 690, 1241, 1274, 2130
BseJI	GATNNNNATC	2 cut(s)	207, 759
BseMI	GCAATG	2 cut(s)	993, 1557
BseMII	CTCAG	6 cut(s)	35, 299, 630, 1020, 1833, 1914
BseNI	ACTGG	9 cut(s)	87, 444, 449, 816, 1182, 1289, 1613, 2115, 2264
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	9 cut(s)	568, 647, 853, 916, 1006, 1759, 1858, 2268, 2310
BseYI	CCCAGC	1 cut(s)	577
BsgI	GTGCAG	1 cut(s)	1560
BshFI	GGCC	6 cut(s)	489, 1246, 1329, 1450, 1632, 1902
BshNI	GGYRCC	2 cut(s)	551, 1379
BshTI	ACCGGT	1 cut(s)	1822
BsiHKAI	GWGCWC	2 cut(s)	1869, 2157
BsiHKCI	CYCGRG	2 cut(s)	1580, 2156
BsiSI	CCGG	3 cut(s)	1168, 1538, 1823
BsiWI	CGTACG	1 cut(s)	162
BslFI	GGGAC	6 cut(s)	298, 358, 549, 1000, 1269, 2125
BsmAI	GTCTC	1 cut(s)	863
BsmBI	CGTCTC	1 cut(s)	863
BsmFI	GGGAC	6 cut(s)	298, 358, 549, 1000, 1269, 2125
BsmI	GAATGC	1 cut(s)	1032
BsnI	GGCC	6 cut(s)	489, 1246, 1329, 1450, 1632, 1902
BsoBI	CYCGRG	2 cut(s)	1580, 2156
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	1869, 2157
Bsp1407I	TGTACA	1 cut(s)	256
Bsp19I	CCATGG	1 cut(s)	1274
BspANI	GGCC	6 cut(s)	489, 1246, 1329, 1450, 1632, 1902
BspCNI	CTCAG	6 cut(s)	36, 300, 631, 1019, 1834, 1915
BspHI	TCATGA	1 cut(s)	943
BspMAI	CTGCAG	2 cut(s)	637, 2286
BspMI	ACCTGC	2 cut(s)	606, 2167
BspPI	GGATC	8 cut(s)	93, 566, 579, 808, 1178, 2258, 2271, 2373
BspQI	GCTCTTC	1 cut(s)	2271
BspT104I	TTCGAA	1 cut(s)	479
BspT107I	GGYRCC	2 cut(s)	551, 1379
BspTI	CTTAAG	1 cut(s)	1814
BsrDI	GCAATG	2 cut(s)	993, 1557
BsrFI	RCCGGY	2 cut(s)	1537, 1822
BsrGI	TGTACA	1 cut(s)	256
BsrI	ACTGG	9 cut(s)	87, 444, 449, 816, 1182, 1289, 1613, 2115, 2264
BssAI	RCCGGY	2 cut(s)	1537, 1822
BssECI	CCNNGG	7 cut(s)	12, 513, 567, 690, 1241, 1274, 2130
BssNI	GRCGYC	2 cut(s)	5, 552
BssSI	CACGAG	1 cut(s)	924
BssT1I	CCWWGG	3 cut(s)	12, 690, 1274
Bst2BI	CACGAG	1 cut(s)	924
Bst2UI	CCWGG	4 cut(s)	515, 1590, 1851, 1862
Bst4CI	ACNGT	6 cut(s)	1436, 1945, 1960, 1999, 2023, 2038
Bst6I	CTCTTC	1 cut(s)	2271
BstACI	GRCGYC	2 cut(s)	5, 552
BstAFI	CTTAAG	1 cut(s)	1814
BstAUI	TGTACA	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	5 cut(s)	542, 934, 1539, 1777, 1892
BstDSI	CCRYGG	4 cut(s)	567, 1241, 1274, 2130
BstENI	CCTNNNNNAGG	1 cut(s)	1664
BstH2I	RGCGCY	2 cut(s)	555, 1911
BstHHI	GCGC	4 cut(s)	554, 1032, 1428, 1910
BstMAI	GTCTC	1 cut(s)	863
BstMWI	GCNNNNNNNGC	7 cut(s)	356, 920, 929, 1016, 1098, 1843, 2152
BstNI	CCWGG	4 cut(s)	515, 1590, 1851, 1862
BstSCI	CCNGG	4 cut(s)	513, 1588, 1849, 1860
BstSFI	CTRYAG	3 cut(s)	633, 750, 2282
BstV1I	GCAGC	9 cut(s)	568, 647, 853, 916, 1006, 1759, 1858, 2268, 2310
BstV2I	GAAGAC	2 cut(s)	800, 2142
BstX2I	RGATCY	6 cut(s)	85, 114, 571, 1170, 2263, 2365
BstXI	CCANNNNNNTGG	3 cut(s)	697, 1640, 1799
BstYI	RGATCY	6 cut(s)	85, 114, 571, 1170, 2263, 2365
BsuI	GTATCC	2 cut(s)	2001, 2040
BsuRI	GGCC	6 cut(s)	489, 1246, 1329, 1450, 1632, 1902
BtgI	CCRYGG	4 cut(s)	567, 1241, 1274, 2130
BtgZI	GCGATG	2 cut(s)	1076, 2177
BtsI	GCAGTG	1 cut(s)	1786
BtsIMutI	CAGTG	7 cut(s)	41, 456, 823, 1786, 1956, 1995, 2034
BveI	ACCTGC	2 cut(s)	606, 2167
Cac8I	GCNNGC	5 cut(s)	542, 934, 1539, 1777, 1892
CaiI	CAGNNNCTG	3 cut(s)	677, 1714, 1775
CciI	TCATGA	1 cut(s)	943
CfoI	GCGC	4 cut(s)	554, 1032, 1428, 1910
Cfr10I	RCCGGY	2 cut(s)	1537, 1822
Cfr13I	GGNCC	9 cut(s)	312, 487, 770, 905, 1124, 1245, 1283, 1657, 2112
CsiI	ACCWGGT	1 cut(s)	1588
Csp6I	GTAC	6 cut(s)	163, 257, 496, 957, 1380, 1951
CspAI	ACCGGT	1 cut(s)	1822
CspCI	CAANNNNNGTGG	2 cut(s)	1417, 1452
CviAII	CATG	9 cut(s)	94, 215, 775, 944, 1275, 1834, 1856, 2143, 2221
CviQI	GTAC	6 cut(s)	163, 257, 496, 957, 1380, 1951
DinI	GGCGCC	1 cut(s)	553
EaeI	YGGCCR	2 cut(s)	1630, 1900
Eam1104I	CTCTTC	1 cut(s)	2271
EarI	CTCTTC	1 cut(s)	2271
EciI	GGCGGA	3 cut(s)	1435, 1627, 2049
Ecl136II	GAGCTC	2 cut(s)	1867, 2155
Eco130I	CCWWGG	3 cut(s)	12, 690, 1274
Eco24I	GRGCYC	2 cut(s)	1869, 2157
Eco32I	GATATC	1 cut(s)	2044
Eco47I	GGWCC	7 cut(s)	312, 770, 905, 1124, 1283, 1657, 2112
Eco47III	AGCGCT	1 cut(s)	1909
Eco53kI	GAGCTC	2 cut(s)	1867, 2155
Eco57I	CTGAAG	4 cut(s)	623, 1962, 2127, 2168
Eco88I	CYCGRG	2 cut(s)	1580, 2156
EcoICRI	GAGCTC	2 cut(s)	1867, 2155
EcoNI	CCTNNNNNAGG	1 cut(s)	1664
EcoO109I	RGGNCCY	4 cut(s)	312, 770, 1283, 1657
EcoRI	GAATTC	1 cut(s)	395
EcoRII	CCWGG	4 cut(s)	513, 1588, 1849, 1860
EcoRV	GATATC	1 cut(s)	2044
EcoT14I	CCWWGG	3 cut(s)	12, 690, 1274
EcoT38I	GRGCYC	2 cut(s)	1869, 2157
EgeI	GGCGCC	1 cut(s)	553
EheI	GGCGCC	1 cut(s)	553
ErhI	CCWWGG	3 cut(s)	12, 690, 1274
Esp3I	CGTCTC	1 cut(s)	863
FaeI	CATG	9 cut(s)	97, 218, 778, 947, 1278, 1837, 1859, 2146, 2224
FaqI	GGGAC	6 cut(s)	298, 358, 549, 1000, 1269, 2125
FatI	CATG	9 cut(s)	93, 214, 774, 943, 1274, 1833, 1855, 2142, 2220
FbaI	TGATCA	1 cut(s)	2370
FblI	GTMKAC	1 cut(s)	8
FriOI	GRGCYC	2 cut(s)	1869, 2157
FspBI	CTAG	2 cut(s)	60, 1806
FspI	TGCGCA	1 cut(s)	1427
GlaI	GCGC	4 cut(s)	553, 1031, 1427, 1909
GsaI	CCCAGC	1 cut(s)	581
GsuI	CTGGAG	2 cut(s)	549, 1775
HaeII	RGCGCY	2 cut(s)	555, 1911
HaeIII	GGCC	6 cut(s)	489, 1246, 1329, 1450, 1632, 1902
HapII	CCGG	3 cut(s)	1168, 1538, 1823
HhaI	GCGC	4 cut(s)	554, 1032, 1428, 1910
Hin1I	GRCGYC	2 cut(s)	5, 552
Hin1II	CATG	9 cut(s)	97, 218, 778, 947, 1278, 1837, 1859, 2146, 2224
Hin6I	GCGC	4 cut(s)	552, 1030, 1426, 1908
HinP1I	GCGC	4 cut(s)	552, 1030, 1426, 1908
HincII	GTYRAC	2 cut(s)	9, 469
HindII	GTYRAC	2 cut(s)	9, 469
HindIII	AAGCTT	1 cut(s)	1337
HpaII	CCGG	3 cut(s)	1168, 1538, 1823
HphI	GGTGA	7 cut(s)	191, 218, 620, 783, 1578, 1837, 2341
Hpy166II	GTNNAC	3 cut(s)	9, 469, 1759
Hpy8I	GTNNAC	3 cut(s)	9, 469, 1759
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	9 cut(s)	598, 755, 823, 1258, 1678, 1772, 1806, 2102, 2143
HpyCH4III	ACNGT	6 cut(s)	1436, 1945, 1960, 1999, 2023, 2038
HpyCH4IV	ACGT	2 cut(s)	165, 1648
HpyF10VI	GCNNNNNNNGC	7 cut(s)	356, 920, 929, 1016, 1098, 1843, 2152
HpySE526I	ACGT	2 cut(s)	165, 1648
Hsp92I	GRCGYC	2 cut(s)	5, 552
Hsp92II	CATG	9 cut(s)	97, 218, 778, 947, 1278, 1837, 1859, 2146, 2224
HspAI	GCGC	4 cut(s)	552, 1030, 1426, 1908
KasI	GGCGCC	1 cut(s)	551
KpnI	GGTACC	1 cut(s)	1383
KroI	GCCGGC	1 cut(s)	1537
KroNI	GCCGGC	1 cut(s)	1539
Ksp22I	TGATCA	1 cut(s)	2370
LguI	GCTCTTC	1 cut(s)	2271
LmnI	GCTCC	7 cut(s)	460, 715, 1864, 1872, 2152, 2224, 2380
Lsp1109I	GCAGC	9 cut(s)	568, 647, 853, 916, 1006, 1759, 1858, 2268, 2310
LweI	GCATC	7 cut(s)	133, 446, 499, 811, 1413, 2108, 2355
MabI	ACCWGGT	1 cut(s)	1588
MaeI	CTAG	2 cut(s)	60, 1806
MaeII	ACGT	2 cut(s)	165, 1648
MaeIII	GTNAC	4 cut(s)	187, 685, 1584, 1781
MfeI	CAATTG	1 cut(s)	1116
MflI	RGATCY	6 cut(s)	85, 114, 571, 1170, 2263, 2365
MhlI	GDGCHC	2 cut(s)	1869, 2157
MlsI	TGGCCA	2 cut(s)	1632, 1902
MluCI	AATT	8 cut(s)	239, 395, 739, 1116, 1495, 1551, 2072, 2182
MluNI	TGGCCA	2 cut(s)	1632, 1902
Mly113I	GGCGCC	1 cut(s)	552
MlyI	GAGTC	7 cut(s)	130, 571, 668, 842, 982, 998, 1592
MmeI	TCCRAC	1 cut(s)	1102
Mox20I	TGGCCA	2 cut(s)	1632, 1902
MroNI	GCCGGC	1 cut(s)	1537
MscI	TGGCCA	2 cut(s)	1632, 1902
MseI	TTAA	6 cut(s)	264, 345, 783, 1815, 2001, 2172
MslI	CAYNNNNRTG	4 cut(s)	141, 816, 1083, 1468
Msp20I	TGGCCA	2 cut(s)	1632, 1902
MspA1I	CMGCKG	6 cut(s)	527, 581, 638, 797, 1772, 1982
MspCI	CTTAAG	1 cut(s)	1814
MspI	CCGG	3 cut(s)	1168, 1538, 1823
MspR9I	CCNGG	4 cut(s)	515, 1590, 1851, 1862
MunI	CAATTG	1 cut(s)	1116
Mva1269I	GAATGC	1 cut(s)	1032
MvaI	CCWGG	4 cut(s)	515, 1590, 1851, 1862
MwoI	GCNNNNNNNGC	7 cut(s)	356, 920, 929, 1016, 1098, 1843, 2152
NaeI	GCCGGC	1 cut(s)	1539
NarI	GGCGCC	1 cut(s)	552
NcoI	CCATGG	1 cut(s)	1274
NgoMIV	GCCGGC	1 cut(s)	1537
NlaIII	CATG	9 cut(s)	97, 218, 778, 947, 1278, 1837, 1859, 2146, 2224
NmuCI	GTSAC	3 cut(s)	685, 1584, 1781
NsbI	TGCGCA	1 cut(s)	1427
NspV	TTCGAA	1 cut(s)	479
OliI	CACNNNNGTG	1 cut(s)	1468
PaeR7I	CTCGAG	1 cut(s)	2156
PagI	TCATGA	1 cut(s)	943
PciSI	GCTCTTC	1 cut(s)	2271
PctI	GAATGC	1 cut(s)	1032
PdiI	GCCGGC	1 cut(s)	1539
Pfl23II	CGTACG	1 cut(s)	162
PflMI	CCANNNNNTGG	3 cut(s)	1121, 1416, 1775
PinAI	ACCGGT	1 cut(s)	1822
PleI	GAGTC	7 cut(s)	129, 570, 668, 841, 982, 998, 1591
PluTI	GGCGCC	1 cut(s)	555
PpsI	GAGTC	7 cut(s)	129, 570, 668, 841, 982, 998, 1591
PpuMI	RGGWCCY	4 cut(s)	312, 770, 1283, 1657
PshBI	ATTAAT	1 cut(s)	783
Psp124BI	GAGCTC	2 cut(s)	1869, 2157
Psp5II	RGGWCCY	4 cut(s)	312, 770, 1283, 1657
Psp6I	CCWGG	4 cut(s)	513, 1588, 1849, 1860
PspFI	CCCAGC	1 cut(s)	577
PspGI	CCWGG	4 cut(s)	513, 1588, 1849, 1860
PspLI	CGTACG	1 cut(s)	162
PspPI	GGNCC	9 cut(s)	312, 487, 770, 905, 1124, 1245, 1283, 1657, 2112
PspPPI	RGGWCCY	4 cut(s)	312, 770, 1283, 1657
PspXI	VCTCGAGB	1 cut(s)	2156
PstI	CTGCAG	2 cut(s)	637, 2286
PstNI	CAGNNNCTG	3 cut(s)	677, 1714, 1775
PsuI	RGATCY	6 cut(s)	85, 114, 571, 1170, 2263, 2365
PvuII	CAGCTG	5 cut(s)	581, 638, 797, 1772, 1982
RsaI	GTAC	6 cut(s)	164, 258, 497, 958, 1381, 1952
RsaNI	GTAC	6 cut(s)	163, 257, 496, 957, 1380, 1951
RseI	CAYNNNNRTG	4 cut(s)	141, 816, 1083, 1468
SacI	GAGCTC	2 cut(s)	1869, 2157
SalI	GTCGAC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	2271
SaqAI	TTAA	6 cut(s)	264, 345, 783, 1815, 2001, 2172
Sau96I	GGNCC	9 cut(s)	312, 487, 770, 905, 1124, 1245, 1283, 1657, 2112
ScaI	AGTACT	1 cut(s)	958
SchI	GAGTC	7 cut(s)	130, 571, 668, 842, 982, 998, 1592
ScrFI	CCNGG	4 cut(s)	515, 1590, 1851, 1862
SduI	GDGCHC	2 cut(s)	1869, 2157
SexAI	ACCWGGT	1 cut(s)	1588
SfaNI	GCATC	7 cut(s)	133, 446, 499, 811, 1413, 2108, 2355
SfcI	CTRYAG	3 cut(s)	633, 750, 2282
SfoI	GGCGCC	1 cut(s)	553
Sfr274I	CTCGAG	1 cut(s)	2156
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	7 cut(s)	312, 770, 905, 1124, 1283, 1657, 2112
SlaI	CTCGAG	1 cut(s)	2156
SmiMI	CAYNNNNRTG	4 cut(s)	141, 816, 1083, 1468
SmlI	CTYRAG	5 cut(s)	118, 318, 1452, 1814, 2156
SmoI	CTYRAG	5 cut(s)	118, 318, 1452, 1814, 2156
Sse9I	AATT	8 cut(s)	239, 395, 739, 1116, 1495, 1551, 2072, 2182
SspDI	GGCGCC	1 cut(s)	551
SspI	AATATT	3 cut(s)	865, 940, 1305
SspMI	CTAG	2 cut(s)	60, 1806
SstI	GAGCTC	2 cut(s)	1869, 2157
StyD4I	CCNGG	4 cut(s)	513, 1588, 1849, 1860
StyI	CCWWGG	3 cut(s)	12, 690, 1274
TaaI	ACNGT	6 cut(s)	1436, 1945, 1960, 1999, 2023, 2038
TaiI	ACGT	2 cut(s)	168, 1651
TaqI	TCGA	6 cut(s)	8, 479, 1129, 2040, 2157, 2235
TasI	AATT	8 cut(s)	239, 395, 739, 1116, 1495, 1551, 2072, 2182
TatI	WGTACW	2 cut(s)	256, 956
TauI	GCSGC	2 cut(s)	1332, 1350
Tru1I	TTAA	6 cut(s)	264, 345, 783, 1815, 2001, 2172
Tru9I	TTAA	6 cut(s)	264, 345, 783, 1815, 2001, 2172
TscAI	CASTG	7 cut(s)	48, 456, 823, 1786, 1963, 2002, 2041
TseFI	GTSAC	3 cut(s)	685, 1584, 1781
Tsp45I	GTSAC	3 cut(s)	685, 1584, 1781
TspDTI	ATGAA	7 cut(s)	186, 800, 932, 1334, 1563, 1680, 2327
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	7 cut(s)	48, 456, 823, 1786, 1963, 2002, 2041
Van91I	CCANNNNNTGG	3 cut(s)	1121, 1416, 1775
Vha464I	CTTAAG	1 cut(s)	1814
VpaK11BI	GGWCC	7 cut(s)	312, 770, 905, 1124, 1283, 1657, 2112
VspI	ATTAAT	1 cut(s)	783
XagI	CCTNNNNNAGG	1 cut(s)	1664
XapI	RAATTY	3 cut(s)	239, 395, 2072
XhoI	CTCGAG	1 cut(s)	2156
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	60, 1806
ZrmI	AGTACT	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.