Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007181

Physical Location & Seq

Genomic Coordinates Forward (+)

58626185 .. 58629919

Gene Structure 3735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004349

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGGCTTCGTCTACTATGGTGATCAAGGTCAAATATGGGGATACACTGAGGCGTTTCAATGCTCGTGTTGACGAGAATGATCAACTGGATCTTGACATGGGTGGACTGCGGTTCAAAATATATAGTCTCTTCAATTTTCAGCTTGATGCTGACATCACTATGACCTATATTGATGAAGATGGTGATATAGTGACTCTGGTTGATGACGAGGATTTGCGTGATGCTATGAAGCAGAATATGAAGTTCTTGAGGATTGATGTGCATGACAAAACTGACAAATCTGAGAAATCTTATTGCAAATCAAGTGGAAGTTCTACCCCTGTAAGATATCCCTTGCCAGATATCACCCCTGAGCCTATCCGTGAACTAATCTCCAGGGTTCCTCGTGACTTGACTCCAAACGCCCTTGGTCCAGGGTTTGCGGATCTTGTTGACTGCTTTTCGAAGATGGGAATGTCCTATTTACTTCAGGCTGGTGGAGTTTCAGGCGTCAAGAATGATTCCTCTGAGAAACCCTTAGCTCCATCTGCCAATGATATGAAGGACGATGATAAGTCAGAAACCATCTTAAAGTCTACCACTGAGGAATCTAGCTCTAAAAACAGTCAGGCAAAGGATGCTTTAAATGTGACCAAGGATGTGGGAATATCGAATCCACCTCAGAATGCTCCAGTTGATCTCAATGTTCTTCCTGCTGATTCTAATCCATCTGGACCCACACCCATCAATGTTGCACCAGTTGGAGCAAGTCTTCATACTGCTGAGGAGAGGAAGGGGTCAGAGAAGGTTACCAGTGGTCAGGTCAAGGGCAAGTCTCTTGGTTGTGGTGGATCTACAAGTTCTGCTATCCCTACATTGAATGTTAATGACATGAGCAATAATCATTTCAATCAATGTCCATTTTCAGAGACTCCTATTGTGAATGACTCGGCTCCTGTTGCATATCGTCGTCTTCATCCTTTTAAAAGGAATCATTCTGAAGCAATGGGTGGTATGTTCCACACTGGTGTTCGCTGTGATGGATGTGGTTGTCATCCAATAATTGGACCCCGGTTCAAGTCCATAGTGAAAGCAGATTATGACCTCTGCCGTATCTGTTTCTCGAGTATTGGTAATGTGGCTGAGTACATTAGAATTGACCACCCTTTGTCTTATCGCCATCCACGTCCTTTCAAGGGGATGCATGAACAACCTCCATGGATGGGTCCTTCAGTATTGCCAAAGATACTGAGAAATTGTAGCGCGAAGCCTGGGCGACCTAAGCTTGACAGCCGCTTCGTTTTGGATGTCAATGTAATGGATGGTACCTTAATGGCCCCATCTACTCCATTTACCAAGATTTGGCGGATGCGCAACAATGGTGGTTTGATCTGGCCTAAAGGAACGCAACTCATGTGGATTGGTGGAGACAGGTTTAGCAAATCTGATTCAGTTGAGATAGAGATTCCTGCGCGTGGTGTGTTGGCTGAAAATGAACTTGATATTGCTGTTGATTTTACTGCGCCCCAGTCACCTGGACGGTACATCTCATATTGGAGGATGGCTTCTCCATCTGGTCAGAAGTTTGGGCAACGTGTTTGGGTTCTGATTCAGGTGGATACTTCCCTCAAGGATTCATTCTTTGAGAGCTTTCAAGGTTTGAACCTGAACCTGCCCCCTGAAAACGTGGTTAACTTTCCTGAGCAAATGAACTTTCCTCAGCAACATGTGGGCAGTGACTTTGTCCAGCCTTCTAGCTCTAACTCAGTGAAGGAACCAGCAATTCCCATTCCTGACAAGCAGCCTGAAAATGAGCAGGATCTCAACTTCCCTATAAATGATAGCTTGCTGGTTGGCCACAGTATTCCTGCCCCTACTGCTCCAGTGGCTTCTTCAACTGTGTCATACCCCACTGTGGACCAGAGTGCTCCAGTCCCTACTGCGCAAGTGGCCTCTTCAACTGTGACATACCCCACTGTTGATATATTTGAACCAGCCCTGCCCTCCCCCAGATCTTCCCCTGCTGTCACTCTACCAACATCAGCTGAAGGGACCAGCTCAAAAAATCCTGTGGAGGACACCCTCCTTAAGGAGCTTGAGGAGATGGGATTTAAGCAGGCGAATTTGAACAAGGAAATTCTACGCAGGAATGAGTACAACCTGGAGCAGTCTGTGGATGATCTCTGTGAGGTTGCTGAATGGGATCCTATTCTTGAAGAGCTGCAGGAAATGGGTTTCAATGATACAGAGATGAACAAGAAGCTGCTTGCGAAGAACAATGGAAGCATCAAGCGTGTGGTCATGGATCTTATCAATGGGGACAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005829 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016043 GO:0016236 GO:0022607 GO:0031410 GO:0031982 GO:0032182 GO:0034622 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0051258 GO:0051259 GO:0061919 GO:0065003 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

N_BRCA1_IG PB1 ZZ

Protein Analysis

770

Amino Acids

84.57

Weight (kDa)

5.18

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	6 - 89	1.2e-09	PB1 domain
ZZ	PF00569	334 - 369	6.4e-09	Zinc finger, ZZ type
N_BRCA1_IG	PF16158	431 - 532	8.6e-33	Ig-like domain from next to BRCA1 gene
UBA_NBR1_C	PF24932	685 - 724	3.7e-23	Next to BRCA1 gene 1 protein-like, C-terminal UBA domain
UBA_NBR1_C	PF24932	727 - 764	4.2e-11	Next to BRCA1 gene 1 protein-like, C-terminal UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24690
fragaria_vesca	FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270
malus_domestica	MD06G1165900.v1.1 MD14G1171800.v1.1
prunus_persica	Prupe.5G165800_v2.0.a1 Prupe.5G165800_v2.0.a1 Prupe.5G165800_v2.0.a1
pyrus_communis	pycom06g14840 pycom14g14340
rosa_chinensis	RchiOBHm_Chr7g0192591
rosa_laevigata	RLG00000004349
rosa_multiflora	Rmu_sc0003108.1_g000043
rosa_roxburghii	Rroxscaffold_3G00262920
rosa_rugosa	Rorug07G0002500
rosa_samantha	Rh7AG126900 Rh7BG129200 Rh7CG131000 Rh7DG130300
rosa_wichuraiana	Rw7G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1352, 1923
Acc36I	ACCTGC	1 cut(s)	1659
Acc65I	GGTACC	1 cut(s)	1304
AccB1I	GGYRCC	1 cut(s)	1304
AccB7I	CCANNNNNTGG	2 cut(s)	1043, 1341
AccI	GTMKAC	2 cut(s)	11, 575
AccII	CGCG	2 cut(s)	1244, 1453
AciI	CCGC	4 cut(s)	109, 422, 1273, 1345
AclWI	GGATC	7 cut(s)	96, 432, 838, 1806, 2177, 2190, 2292
AcoI	YGGCCR	1 cut(s)	1834
AcsI	RAATTY	2 cut(s)	2101, 2115
AcuI	CTGAAG	4 cut(s)	452, 999, 1194, 2046
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	4 cut(s)	1127, 1306, 1523, 2135
AfiI	CCNNNNNNNGG	7 cut(s)	1043, 1175, 1202, 1341, 1454, 1894, 2068
AflII	CTTAAG	1 cut(s)	2066
AflIII	ACRYGT	2 cut(s)	1573, 1705
AjiI	CACGTC	1 cut(s)	1166
AjnI	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2139
AleI	CACNNNNGTG	1 cut(s)	1005
Alw21I	GWGCWC	1 cut(s)	1909
Alw26I	GTCTC	4 cut(s)	131, 819, 902, 1401
AlwI	GGATC	7 cut(s)	96, 432, 838, 1806, 2177, 2190, 2292
Ama87I	CYCGRG	1 cut(s)	1102
AoxI	GGCC	4 cut(s)	1314, 1373, 1834, 1929
ApeKI	GCWGC	3 cut(s)	1780, 2200, 2242
ApoI	RAATTY	2 cut(s)	2101, 2115
ArsI	GACNNNNNNTTYG	2 cut(s)	1259, 1291
Asp718I	GGTACC	1 cut(s)	1304
AspLEI	GCGC	5 cut(s)	1244, 1353, 1453, 1504, 1924
AspS9I	GGNCC	7 cut(s)	410, 713, 1046, 1205, 1315, 1897, 2031
AsuC2I	CCSGG	1 cut(s)	1051
AsuHPI	GGTGA	4 cut(s)	31, 194, 337, 1503
AsuII	TTCGAA	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	1102
AvaII	GGWCC	6 cut(s)	410, 713, 1046, 1205, 1897, 2031
BalI	TGGCCA	1 cut(s)	1836
BamHI	GGATCC	1 cut(s)	2182
BanI	GGYRCC	1 cut(s)	1304
BauI	CACGAG	2 cut(s)	63, 384
BbsI	GAAGAC	2 cut(s)	743, 944
Bbv12I	GWGCWC	1 cut(s)	1909
BbvCI	CCTCAGC	2 cut(s)	762, 1698
BbvI	GCAGC	3 cut(s)	1792, 2187, 2229
BceAI	ACGGC	1 cut(s)	1074
BciT130I	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2141
BciVI	GTATCC	2 cut(s)	34, 1591
BclI	TGATCA	2 cut(s)	21, 79
BcnI	CCSGG	1 cut(s)	1051
BcoDI	GTCTC	4 cut(s)	131, 819, 902, 1401
BfaI	CTAG	2 cut(s)	591, 1734
BfmI	CTRYAG	2 cut(s)	2201, 2306
BfrI	CTTAAG	1 cut(s)	2066
BfuAI	ACCTGC	1 cut(s)	1659
BfuI	GTATCC	2 cut(s)	34, 1591
BglII	AGATCT	1 cut(s)	1991
BisI	GCNGC	4 cut(s)	1273, 1781, 2201, 2243
BlsI	GCNGC	4 cut(s)	1274, 1782, 2202, 2244
Bme1390I	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2141
Bme18I	GGWCC	6 cut(s)	410, 713, 1046, 1205, 1897, 2031
BmeT110I	CYCGRG	1 cut(s)	1102
BmgBI	CACGTC	1 cut(s)	1166
BmgT120I	GGNCC	7 cut(s)	410, 713, 1046, 1205, 1315, 1897, 2031
BmrFI	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2141
BmrI	ACTGGG	1 cut(s)	1501
BmsI	GCATC	6 cut(s)	136, 211, 607, 1170, 1338, 2274
BmuI	ACTGGG	1 cut(s)	1501
BpiI	GAAGAC	2 cut(s)	743, 944
BpmI	CTGGAG	5 cut(s)	358, 654, 1845, 1893, 2162
Bpu10I	CCTNAGC	6 cut(s)	351, 517, 762, 1260, 1680, 1698
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	3 cut(s)	268, 1592, 2096
BpuMI	CCSGG	1 cut(s)	1051
BsaBI	GATNNNNATC	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	489
BsaJI	CCNNGG	7 cut(s)	375, 406, 413, 633, 1049, 1196, 1250
Bsc4I	CCNNNNNNNGG	7 cut(s)	1043, 1175, 1202, 1341, 1454, 1894, 2068
Bse1I	ACTGG	8 cut(s)	90, 671, 737, 792, 1009, 1507, 1862, 1910
Bse3DI	GCAATG	1 cut(s)	990
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2141
BseDI	CCNNGG	7 cut(s)	375, 406, 413, 633, 1049, 1196, 1250
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	7 cut(s)	1043, 1175, 1202, 1341, 1454, 1894, 2068
BseMI	GCAATG	1 cut(s)	990
BseNI	ACTGG	8 cut(s)	90, 671, 737, 792, 1009, 1507, 1862, 1910
BseRI	GAGGAG	2 cut(s)	779, 2093
BseXI	GCAGC	3 cut(s)	1792, 2187, 2229
Bsh1236I	CGCG	2 cut(s)	1244, 1453
BshFI	GGCC	4 cut(s)	1316, 1375, 1836, 1931
BshNI	GGYRCC	1 cut(s)	1304
BsiHKAI	GWGCWC	1 cut(s)	1909
BsiHKCI	CYCGRG	1 cut(s)	1102
BsiSI	CCGG	1 cut(s)	1051
BslFI	GGGAC	2 cut(s)	1898, 2044
BslI	CCNNNNNNNGG	7 cut(s)	1043, 1175, 1202, 1341, 1454, 1894, 2068
BsmAI	GTCTC	4 cut(s)	131, 819, 902, 1401
BsmFI	GGGAC	2 cut(s)	1898, 2044
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	4 cut(s)	1316, 1375, 1836, 1931
BsoBI	CYCGRG	1 cut(s)	1102
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	1909
Bsp19I	CCATGG	1 cut(s)	1196
BspACI	CCGC	4 cut(s)	109, 422, 1273, 1345
BspANI	GGCC	4 cut(s)	1316, 1375, 1836, 1931
BspFNI	CGCG	2 cut(s)	1244, 1453
BspMAI	CTGCAG	1 cut(s)	2205
BspMI	ACCTGC	1 cut(s)	1659
BspPI	GGATC	7 cut(s)	96, 432, 838, 1806, 2177, 2190, 2292
BspQI	GCTCTTC	1 cut(s)	2190
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	1304
BspTI	CTTAAG	1 cut(s)	2066
BsrDI	GCAATG	1 cut(s)	990
BsrI	ACTGG	8 cut(s)	90, 671, 737, 792, 1009, 1507, 1862, 1910
BssECI	CCNNGG	7 cut(s)	375, 406, 413, 633, 1049, 1196, 1250
BssNI	GRCGYC	1 cut(s)	489
BssSI	CACGAG	2 cut(s)	63, 384
BssT1I	CCWWGG	3 cut(s)	406, 633, 1196
Bst2BI	CACGAG	2 cut(s)	63, 384
Bst2UI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2141
Bst4CI	ACNGT	7 cut(s)	605, 1521, 1841, 1879, 1894, 1942, 1957
Bst6I	CTCTTC	3 cut(s)	134, 1939, 2190
BstACI	GRCGYC	1 cut(s)	489
BstAFI	CTTAAG	1 cut(s)	2066
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	1826, 2097, 2247
BstDSI	CCRYGG	1 cut(s)	1196
BstEII	GGTNACC	1 cut(s)	787
BstENI	CCTNNNNNAGG	1 cut(s)	2066
BstFNI	CGCG	2 cut(s)	1244, 1453
BstHHI	GCGC	5 cut(s)	1244, 1353, 1453, 1504, 1924
BstMAI	GTCTC	4 cut(s)	131, 819, 902, 1401
BstMWI	GCNNNNNNNGC	7 cut(s)	527, 617, 938, 1261, 1856, 1865, 1928
BstNI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2141
BstNSI	RCATGY	1 cut(s)	1709
BstPI	GGTNACC	1 cut(s)	787
BstSCI	CCNGG	6 cut(s)	374, 412, 1049, 1249, 1513, 2139
BstSFI	CTRYAG	2 cut(s)	2201, 2306
BstUI	CGCG	2 cut(s)	1244, 1453
BstV1I	GCAGC	3 cut(s)	1792, 2187, 2229
BstV2I	GAAGAC	2 cut(s)	743, 944
BstX2I	RGATCY	7 cut(s)	88, 424, 830, 1798, 1991, 2182, 2284
BstXI	CCANNNNNNTGG	2 cut(s)	640, 1514
BstYI	RGATCY	7 cut(s)	88, 424, 830, 1798, 1991, 2182, 2284
BsuI	GTATCC	2 cut(s)	34, 1591
BsuRI	GGCC	4 cut(s)	1316, 1375, 1836, 1931
BtgI	CCRYGG	1 cut(s)	1196
BtrI	CACGTC	1 cut(s)	1166
BtsI	GCAGTG	1 cut(s)	1720
BtsIMutI	CAGTG	9 cut(s)	44, 579, 799, 1002, 1720, 1752, 1869, 1890, 1953
BveI	ACCTGC	1 cut(s)	1659
Cac8I	GCNNGC	3 cut(s)	1826, 2097, 2247
CfoI	GCGC	5 cut(s)	1244, 1353, 1453, 1504, 1924
Cfr13I	GGNCC	7 cut(s)	410, 713, 1046, 1205, 1315, 1897, 2031
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	4 cut(s)	1126, 1305, 1522, 2134
CspCI	CAANNNNNGTGG	6 cut(s)	286, 321, 1342, 1376, 1377, 1411
CviAII	CATG	8 cut(s)	97, 263, 871, 1184, 1197, 1393, 1706, 2281
CviQI	GTAC	4 cut(s)	1126, 1305, 1522, 2134
DraI	TTTAAA	2 cut(s)	624, 964
EaeI	YGGCCR	1 cut(s)	1834
Eam1104I	CTCTTC	3 cut(s)	134, 1939, 2190
EarI	CTCTTC	3 cut(s)	134, 1939, 2190
EciI	GGCGGA	1 cut(s)	1360
Eco130I	CCWWGG	3 cut(s)	406, 633, 1196
Eco32I	GATATC	2 cut(s)	329, 343
Eco47I	GGWCC	6 cut(s)	410, 713, 1046, 1205, 1897, 2031
Eco57I	CTGAAG	4 cut(s)	452, 999, 1194, 2046
Eco88I	CYCGRG	1 cut(s)	1102
Eco91I	GGTNACC	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	2066
EcoO109I	RGGNCCY	1 cut(s)	1205
EcoO65I	GGTNACC	1 cut(s)	787
EcoRII	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2139
EcoRV	GATATC	2 cut(s)	329, 343
EcoT14I	CCWWGG	3 cut(s)	406, 633, 1196
EcoT22I	ATGCAT	1 cut(s)	1185
ErhI	CCWWGG	3 cut(s)	406, 633, 1196
FaeI	CATG	8 cut(s)	100, 266, 874, 1187, 1200, 1396, 1709, 2284
FaqI	GGGAC	2 cut(s)	1898, 2044
FatI	CATG	8 cut(s)	96, 262, 870, 1183, 1196, 1392, 1705, 2280
FbaI	TGATCA	2 cut(s)	21, 79
FblI	GTMKAC	2 cut(s)	11, 575
Fnu4HI	GCNGC	4 cut(s)	1273, 1781, 2201, 2243
Fsp4HI	GCNGC	4 cut(s)	1273, 1781, 2201, 2243
FspBI	CTAG	2 cut(s)	591, 1734
FspI	TGCGCA	2 cut(s)	1352, 1923
GlaI	GCGC	5 cut(s)	1243, 1352, 1452, 1503, 1923
GluI	GCNGC	4 cut(s)	1273, 1781, 2201, 2243
GsuI	CTGGAG	5 cut(s)	358, 654, 1845, 1893, 2162
HaeIII	GGCC	4 cut(s)	1316, 1375, 1836, 1931
HapII	CCGG	1 cut(s)	1051
HgaI	GACGC	1 cut(s)	478
HhaI	GCGC	5 cut(s)	1244, 1353, 1453, 1504, 1924
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	8 cut(s)	100, 266, 874, 1187, 1200, 1396, 1709, 2284
Hin6I	GCGC	5 cut(s)	1242, 1351, 1451, 1502, 1922
HinP1I	GCGC	5 cut(s)	1242, 1351, 1451, 1502, 1922
HincII	GTYRAC	3 cut(s)	70, 433, 1672
HindII	GTYRAC	3 cut(s)	70, 433, 1672
HindIII	AAGCTT	1 cut(s)	1262
HpaI	GTTAAC	1 cut(s)	1672
HpaII	CCGG	1 cut(s)	1051
HphI	GGTGA	4 cut(s)	31, 194, 337, 1503
Hpy166II	GTNNAC	8 cut(s)	12, 70, 104, 365, 433, 576, 1672, 1897
Hpy188III	TCNNGA	9 cut(s)	92, 247, 386, 493, 711, 1102, 1679, 1772, 2192
Hpy8I	GTNNAC	8 cut(s)	12, 70, 104, 365, 433, 576, 1672, 1897
Hpy99I	CGWCG	1 cut(s)	951
HpyAV	CCTTC	7 cut(s)	535, 766, 778, 1218, 1740, 1744, 2021
HpyCH4III	ACNGT	7 cut(s)	605, 1521, 1841, 1879, 1894, 1942, 1957
HpyCH4IV	ACGT	3 cut(s)	1165, 1573, 1665
HpyCH4V	TGCA	6 cut(s)	262, 297, 734, 941, 1183, 2203
HpyF10VI	GCNNNNNNNGC	7 cut(s)	527, 617, 938, 1261, 1856, 1865, 1928
HpySE526I	ACGT	3 cut(s)	1165, 1573, 1665
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	8 cut(s)	100, 266, 874, 1187, 1200, 1396, 1709, 2284
HspAI	GCGC	5 cut(s)	1242, 1351, 1451, 1502, 1922
KpnI	GGTACC	1 cut(s)	1308
Ksp22I	TGATCA	2 cut(s)	21, 79
KspAI	GTTAAC	1 cut(s)	1672
LguI	GCTCTTC	1 cut(s)	2190
LmnI	GCTCC	8 cut(s)	526, 673, 743, 937, 1864, 1912, 2071, 2143
Lsp1109I	GCAGC	3 cut(s)	1792, 2187, 2229
LweI	GCATC	6 cut(s)	136, 211, 607, 1170, 1338, 2274
MaeI	CTAG	2 cut(s)	591, 1734
MaeII	ACGT	3 cut(s)	1165, 1573, 1665
MaeIII	GTNAC	8 cut(s)	190, 386, 628, 787, 1509, 1715, 1942, 2005
MflI	RGATCY	7 cut(s)	88, 424, 830, 1798, 1991, 2182, 2284
MhlI	GDGCHC	1 cut(s)	1909
MlsI	TGGCCA	1 cut(s)	1836
MluCI	AATT	7 cut(s)	133, 1041, 1134, 1234, 1761, 2101, 2115
MluNI	TGGCCA	1 cut(s)	1836
MlyI	GAGTC	4 cut(s)	187, 388, 904, 920
MmeI	TCCRAC	1 cut(s)	721
Mox20I	TGGCCA	1 cut(s)	1836
Mph1103I	ATGCAT	1 cut(s)	1185
MscI	TGGCCA	1 cut(s)	1836
MseI	TTAA	8 cut(s)	569, 623, 864, 963, 1310, 1671, 2067, 2091
MslI	CAYNNNNRTG	2 cut(s)	158, 1005
Msp20I	TGGCCA	1 cut(s)	1836
MspA1I	CMGCKG	1 cut(s)	2024
MspCI	CTTAAG	1 cut(s)	2066
MspI	CCGG	1 cut(s)	1051
MspR9I	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2141
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2141
MvnI	CGCG	2 cut(s)	1244, 1453
MwoI	GCNNNNNNNGC	7 cut(s)	527, 617, 938, 1261, 1856, 1865, 1928
NciI	CCSGG	1 cut(s)	1051
NcoI	CCATGG	1 cut(s)	1196
NlaIII	CATG	8 cut(s)	100, 266, 874, 1187, 1200, 1396, 1709, 2284
NmeAIII	GCCGAG	1 cut(s)	908
NmuCI	GTSAC	7 cut(s)	190, 386, 628, 1509, 1715, 1942, 2005
NsbI	TGCGCA	2 cut(s)	1352, 1923
NsiI	ATGCAT	1 cut(s)	1185
NspI	RCATGY	1 cut(s)	1709
NspV	TTCGAA	1 cut(s)	443
OliI	CACNNNNGTG	1 cut(s)	1005
PaeR7I	CTCGAG	1 cut(s)	1102
PciI	ACATGT	1 cut(s)	1705
PciSI	GCTCTTC	1 cut(s)	2190
PcsI	WCGNNNNNNNCGW	1 cut(s)	1162
PctI	GAATGC	1 cut(s)	670
PfeI	GAWTC	9 cut(s)	500, 587, 652, 698, 970, 1427, 1444, 1588, 1613
PflFI	GACNNNGTC	1 cut(s)	1721
PflMI	CCANNNNNTGG	2 cut(s)	1043, 1341
PkrI	GCNGC	4 cut(s)	1274, 1782, 2202, 2244
PleI	GAGTC	4 cut(s)	187, 388, 904, 920
PpsI	GAGTC	4 cut(s)	187, 388, 904, 920
PpuMI	RGGWCCY	1 cut(s)	1205
PscI	ACATGT	1 cut(s)	1705
Psp5II	RGGWCCY	1 cut(s)	1205
Psp6I	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2139
PspEI	GGTNACC	1 cut(s)	787
PspGI	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2139
PspPI	GGNCC	7 cut(s)	410, 713, 1046, 1205, 1315, 1897, 2031
PspPPI	RGGWCCY	1 cut(s)	1205
PstI	CTGCAG	1 cut(s)	2205
PsuI	RGATCY	7 cut(s)	88, 424, 830, 1798, 1991, 2182, 2284
PsyI	GACNNNGTC	1 cut(s)	1721
PvuII	CAGCTG	1 cut(s)	2024
RsaI	GTAC	4 cut(s)	1127, 1306, 1523, 2135
RsaNI	GTAC	4 cut(s)	1126, 1305, 1522, 2134
RseI	CAYNNNNRTG	2 cut(s)	158, 1005
SapI	GCTCTTC	1 cut(s)	2190
SaqAI	TTAA	8 cut(s)	569, 623, 864, 963, 1310, 1671, 2067, 2091
SatI	GCNGC	4 cut(s)	1273, 1781, 2201, 2243
Sau96I	GGNCC	7 cut(s)	410, 713, 1046, 1205, 1315, 1897, 2031
SchI	GAGTC	4 cut(s)	187, 388, 904, 920
ScrFI	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2141
SduI	GDGCHC	1 cut(s)	1909
SfaNI	GCATC	6 cut(s)	136, 211, 607, 1170, 1338, 2274
SfcI	CTRYAG	2 cut(s)	2201, 2306
Sfr274I	CTCGAG	1 cut(s)	1102
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	6 cut(s)	410, 713, 1046, 1205, 1897, 2031
SlaI	CTCGAG	1 cut(s)	1102
SmiMI	CAYNNNNRTG	2 cut(s)	158, 1005
SmlI	CTYRAG	5 cut(s)	247, 1102, 1607, 2066, 2075
SmoI	CTYRAG	5 cut(s)	247, 1102, 1607, 2066, 2075
Sse9I	AATT	7 cut(s)	133, 1041, 1134, 1234, 1761, 2101, 2115
SsiI	CCGC	4 cut(s)	109, 422, 1273, 1345
SspMI	CTAG	2 cut(s)	591, 1734
StyD4I	CCNGG	6 cut(s)	374, 412, 1049, 1249, 1513, 2139
StyI	CCWWGG	3 cut(s)	406, 633, 1196
TaaI	ACNGT	7 cut(s)	605, 1521, 1841, 1879, 1894, 1942, 1957
TaiI	ACGT	3 cut(s)	1168, 1576, 1668
TaqI	TCGA	3 cut(s)	443, 650, 1103
TasI	AATT	7 cut(s)	133, 1041, 1134, 1234, 1761, 2101, 2115
TatI	WGTACW	2 cut(s)	1125, 2133
TauI	GCSGC	1 cut(s)	1275
TfiI	GAWTC	9 cut(s)	500, 587, 652, 698, 970, 1427, 1444, 1588, 1613
Tru1I	TTAA	8 cut(s)	569, 623, 864, 963, 1310, 1671, 2067, 2091
Tru9I	TTAA	8 cut(s)	569, 623, 864, 963, 1310, 1671, 2067, 2091
TscAI	CASTG	9 cut(s)	51, 586, 799, 1009, 1720, 1752, 1869, 1897, 1960
TseFI	GTSAC	7 cut(s)	190, 386, 628, 1509, 1715, 1942, 2005
TseI	GCWGC	3 cut(s)	1780, 2200, 2242
Tsp45I	GTSAC	7 cut(s)	190, 386, 628, 1509, 1715, 1942, 2005
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	9 cut(s)	51, 586, 799, 1009, 1720, 1752, 1869, 1897, 1960
Tth111I	GACNNNGTC	1 cut(s)	1721
Van91I	CCANNNNNTGG	2 cut(s)	1043, 1341
Vha464I	CTTAAG	1 cut(s)	2066
VpaK11BI	GGWCC	6 cut(s)	410, 713, 1046, 1205, 1897, 2031
XagI	CCTNNNNNAGG	1 cut(s)	2066
XapI	RAATTY	2 cut(s)	2101, 2115
XceI	RCATGY	1 cut(s)	1709
XhoI	CTCGAG	1 cut(s)	1102
XmiI	GTMKAC	2 cut(s)	11, 575
XspI	CTAG	2 cut(s)	591, 1734
Zsp2I	ATGCAT	1 cut(s)	1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.