Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007181

Physical Location & Seq

Genomic Coordinates Reverse (-)

10292302 .. 10296896

Gene Structure 4595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG131000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2229 bp

ATGTTACTGATTGTGTTGAAGGTCAAATATGGGGATACACTGAGGCGTTTCAATGCTCGTGTTGATGAGAATGATCAACTGGATCTTGACATGGGTGGACTGCGGTTCAAAATATATAGTCTTTTCAATTTTCAGCTTGATGCTGACATCACTATGACCTATGTGGACGAAGATGGTGATATAGTGACTCTGGTTGATGATGAGGACCTGCGTGATGCTATGAGGCAGAATATGAAGTTCTTGAGGATTGATGTACATGATAAAACTGACAAATCTGAGAAATCTTATGCCAAATCAAGTGGAAGTTCTACCCCTGTAAGATATCCCTTGCCAGATATCACGCCTGAGCCTATCCGTGAACTAATCTCCAGGGTTCCTCGTGACTTGACTCCAAACGCCCTTGGTCCAGGGTTTGCGGATCTTGTTGACTGCTTTTCGAAGATGGGAATGTCCTATTTACTTCAGGCTGGTGGAGTTTCAGGCGTCAAGAATGATTCCTCTGAGAAACCCTTAGCTCCATCTGCCAATGATATGAAGGACGATGGTAAGTCAGAAACCATCTTAAAGTCTACCACTGAGGAATCTAGCTCTAAAAACAGTCAGGCAAAGGATGCTGTAAATGTGACCAAGGATGTGGGAATGTCGAATCCACCTCAGAATGCTCCAGTTGATCTCAATGTTCTTCCTGCTGATTCTAATCCATCTGGACCCACACCCATCAATGTTACACCAGTTGGAGCAAGTCTTCATACTGCTGAGGAGAGGAAGGAGTCAGAGAAGGGTACCAGTGGTCAGGTCAAGGGCAAGTCTCTTGGTTGTGGTGGATCTACAAGTTCTGCTATCCCTGCGTTGAATGTTAATGACATGAGCAATAATCATTTCAATCAATGTCCATTTTCAGAGACTCCTATTGTGAATGACTCGGCTCCTGTTGCATATCGTCGTCTTCATCCTTTTAAAAGGAATCATTCTGAAGCAATGGGTGGTATGTTCCACACTGGTATTCGCTGTGATGGATGTGGTTGTCATCCAATAATTGGACCCCGGTTCAAGTCCGTAGTGAAAGCAGATTATGACCTCTGCCGTATCTGTTTCTCGAGTATTGGTAATGTGGCTGAGTACATTAGAATTGACCACCCTTTGTCTTATCGCCATCCACGTCCTTTCAAGGGGATGCATGAACAACCTCCATGGCTGGGTCCTTCAGCATTGCCAAAGATACTGAGAAATTGTAGTGCGAAGCCTGGGCGACCTAAGCTTGACAGCCGCTTCGTTTTGGATGTCAACGTAATGGATGGTACCTTAATGGCCCCATCTACTCCATTTACCAAGATTTGGCGGATGCGCAACAATGGGGGTTTGATCTGGCCTAAAGGAACACAACTCATGTGGATTGGTGGAGACAGGTTTAGCAAATCAGATTCAGTTGAGATAGAGATTCCTGCGCATGGTTTATTGGCTGAAAATGAACTTGATATTGCTGTTGATTTTACTGCGCCTGAGTCACCTGGACGGTACATCTCATATTGGAGGATGGCTTCTCCATCTGGTCAGAAGTTTGGGCAACGTGTTTGGGTTCTGATTCAGGTGGATACTTCCCTCAAGGATTCATTCTTTGAGAGTTTTCAAGGTTTGAACCTGAACCTGCCCCCTGAAAACGTGGTTAACTTTCCTGAGCAAATGAACTTTCCTCAGCAACATGTGGGCAGTGACTTTGTCCAGCCTTCTAGCTCTAACTCAGTGAAGGAACCAGCAATTCCCATTCCTGTCAAGCAGCCTGAAAATGAGCAGGATCTCAACTTCCCTATAAATGATAGCTTGCTGGTTGGCCACAGTATTCCTGCCCCTACTGCCCCGGTGGCTTCTTCAACTGTGTCATACCCCACTGTCGACCAGAGTGCTCCAGTCCCTACTGCACAAGTTGCCTCTTCAACTGTGACATACCCCACTGTTGATATATTTGAACCAGCCCCGCCCTCCCCCAGATCTTCCCCTGTTGTCACTCTACCAACATCATCTGAAGGGACCAGCTCAGAAAATCCTGTGGAGGACACCCTCCTTAAGGAGCTTGAGGACATGGGATTTAGGCAGGTGAATTTGAACAAGGAAATTCTGCGCAGGAATGAGTACAACCTGGAGCAATCTGTGGATGATCTCTGTGAGGTTGCTGAATGGGATCCTATTCTTGAAGAGCTGCAGGAAATGGTAAGCTCTATAAGCCGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005829 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016043 GO:0016236 GO:0022607 GO:0031410 GO:0031982 GO:0032182 GO:0034622 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0051258 GO:0051259 GO:0061919 GO:0065003 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

N_BRCA1_IG PB1 ZZ

Protein Analysis

742

Amino Acids

81.57

Weight (kDa)

5.06

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	5 - 87	7.2e-09	PB1 domain
ZZ	PF00569	332 - 367	8.9e-09	Zinc finger, ZZ type
N_BRCA1_IG	PF16158	429 - 530	1.6e-32	Ig-like domain from next to BRCA1 gene
UBA_NBR1_C	PF24932	683 - 722	1.2e-22	Next to BRCA1 gene 1 protein-like, C-terminal UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24690
fragaria_vesca	FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270
malus_domestica	MD06G1165900.v1.1 MD14G1171800.v1.1
prunus_persica	Prupe.5G165800_v2.0.a1 Prupe.5G165800_v2.0.a1 Prupe.5G165800_v2.0.a1
pyrus_communis	pycom06g14840 pycom14g14340
rosa_chinensis	RchiOBHm_Chr7g0192591
rosa_laevigata	RLG00000004349
rosa_multiflora	Rmu_sc0003108.1_g000043
rosa_roxburghii	Rroxscaffold_3G00262920
rosa_rugosa	Rorug07G0002500
rosa_samantha	Rh7AG126900 Rh7BG129200 Rh7CG131000 Rh7DG130300
rosa_wichuraiana	Rw7G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2080
Acc16I	TGCGCA	3 cut(s)	1346, 1446, 2117
Acc36I	ACCTGC	3 cut(s)	216, 1653, 2080
Acc65I	GGTACC	2 cut(s)	782, 1298
AccB1I	GGYRCC	2 cut(s)	782, 1298
AccB7I	CCANNNNNTGG	2 cut(s)	1037, 1335
AccI	GTMKAC	2 cut(s)	569, 1890
AciI	CCGC	5 cut(s)	103, 416, 1267, 1339, 1973
AclWI	GGATC	6 cut(s)	90, 426, 832, 1800, 2171, 2184
AcoI	YGGCCR	1 cut(s)	1828
AcsI	RAATTY	2 cut(s)	2095, 2109
AcuI	CTGAAG	4 cut(s)	446, 993, 1188, 2040
AcyI	GRCGYC	1 cut(s)	483
AfaI	GTAC	6 cut(s)	255, 784, 1121, 1300, 1517, 2129
AfiI	CCNNNNNNNGG	6 cut(s)	1037, 1169, 1196, 1335, 1448, 2062
AflII	CTTAAG	1 cut(s)	2060
AflIII	ACRYGT	2 cut(s)	1567, 1699
AjiI	CACGTC	1 cut(s)	1160
AjnI	CCWGG	5 cut(s)	368, 406, 1243, 1507, 2133
Alw21I	GWGCWC	1 cut(s)	1903
Alw26I	GTCTC	3 cut(s)	813, 896, 1395
AlwI	GGATC	6 cut(s)	90, 426, 832, 1800, 2171, 2184
Ama87I	CYCGRG	1 cut(s)	1096
AoxI	GGCC	3 cut(s)	1308, 1367, 1828
ApeKI	GCWGC	2 cut(s)	1774, 2194
ApoI	RAATTY	2 cut(s)	2095, 2109
ArsI	GACNNNNNNTTYG	2 cut(s)	1253, 1285
Asp718I	GGTACC	2 cut(s)	782, 1298
AspLEI	GCGC	4 cut(s)	1347, 1447, 1498, 2118
AspS9I	GGNCC	7 cut(s)	205, 404, 707, 1040, 1199, 1309, 2025
AsuC2I	CCSGG	2 cut(s)	1045, 1856
AsuHPI	GGTGA	3 cut(s)	188, 1497, 2104
AsuII	TTCGAA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	1096
AvaII	GGWCC	6 cut(s)	205, 404, 707, 1040, 1199, 2025
BalI	TGGCCA	1 cut(s)	1830
BamHI	GGATCC	1 cut(s)	2176
BanI	GGYRCC	2 cut(s)	782, 1298
BauI	CACGAG	2 cut(s)	57, 378
BbsI	GAAGAC	2 cut(s)	737, 938
Bbv12I	GWGCWC	1 cut(s)	1903
BbvCI	CCTCAGC	2 cut(s)	756, 1692
BbvI	GCAGC	2 cut(s)	1786, 2181
BceAI	ACGGC	1 cut(s)	1068
BcgI	CGANNNNNNTGC	2 cut(s)	1880, 1914
BciT130I	CCWGG	5 cut(s)	370, 408, 1245, 1509, 2135
BciVI	GTATCC	2 cut(s)	28, 1585
BclI	TGATCA	1 cut(s)	73
BcnI	CCSGG	2 cut(s)	1045, 1856
BcoDI	GTCTC	3 cut(s)	813, 896, 1395
BfaI	CTAG	2 cut(s)	585, 1728
BfmI	CTRYAG	1 cut(s)	2195
BfrI	CTTAAG	1 cut(s)	2060
BfuAI	ACCTGC	3 cut(s)	216, 1653, 2080
BfuI	GTATCC	2 cut(s)	28, 1585
BglI	GCCNNNNNGGC	1 cut(s)	1859
BglII	AGATCT	1 cut(s)	1985
BisI	GCNGC	3 cut(s)	1267, 1775, 2195
BlsI	GCNGC	3 cut(s)	1268, 1776, 2196
Bme1390I	CCNGG	7 cut(s)	370, 408, 1045, 1245, 1509, 1856, 2135
Bme18I	GGWCC	6 cut(s)	205, 404, 707, 1040, 1199, 2025
BmeT110I	CYCGRG	1 cut(s)	1096
BmgBI	CACGTC	1 cut(s)	1160
BmgT120I	GGNCC	7 cut(s)	205, 404, 707, 1040, 1199, 1309, 2025
BmrFI	CCNGG	7 cut(s)	370, 408, 1045, 1245, 1509, 1856, 2135
BmsI	GCATC	5 cut(s)	130, 205, 601, 1164, 1332
BpiI	GAAGAC	2 cut(s)	737, 938
BpmI	CTGGAG	4 cut(s)	352, 648, 1887, 2156
Bpu10I	CCTNAGC	6 cut(s)	345, 511, 756, 1254, 1674, 1692
Bpu14I	TTCGAA	1 cut(s)	437
BpuEI	CTTGAG	3 cut(s)	262, 1586, 2090
BpuMI	CCSGG	2 cut(s)	1045, 1856
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	483
BsaJI	CCNNGG	8 cut(s)	369, 400, 407, 627, 1043, 1190, 1244, 1854
Bsc4I	CCNNNNNNNGG	6 cut(s)	1037, 1169, 1196, 1335, 1448, 2062
Bse1I	ACTGG	6 cut(s)	84, 665, 731, 786, 1003, 1904
Bse3DI	GCAATG	2 cut(s)	984, 1208
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	5 cut(s)	370, 408, 1245, 1509, 2135
BseDI	CCNNGG	8 cut(s)	369, 400, 407, 627, 1043, 1190, 1244, 1854
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	6 cut(s)	1037, 1169, 1196, 1335, 1448, 2062
BseMI	GCAATG	2 cut(s)	984, 1208
BseNI	ACTGG	6 cut(s)	84, 665, 731, 786, 1003, 1904
BseRI	GAGGAG	1 cut(s)	773
BseXI	GCAGC	2 cut(s)	1786, 2181
BseYI	CCCAGC	1 cut(s)	1195
BsgI	GTGCAG	1 cut(s)	1899
BshFI	GGCC	3 cut(s)	1310, 1369, 1830
BshNI	GGYRCC	2 cut(s)	782, 1298
BsiHKAI	GWGCWC	1 cut(s)	1903
BsiHKCI	CYCGRG	1 cut(s)	1096
BsiSI	CCGG	2 cut(s)	1045, 1856
BslFI	GGGAC	2 cut(s)	1892, 2038
BslI	CCNNNNNNNGG	6 cut(s)	1037, 1169, 1196, 1335, 1448, 2062
BsmAI	GTCTC	3 cut(s)	813, 896, 1395
BsmFI	GGGAC	2 cut(s)	1892, 2038
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	3 cut(s)	1310, 1369, 1830
BsoBI	CYCGRG	1 cut(s)	1096
Bsp119I	TTCGAA	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	1903
Bsp1407I	TGTACA	1 cut(s)	253
Bsp19I	CCATGG	1 cut(s)	1190
BspACI	CCGC	5 cut(s)	103, 416, 1267, 1339, 1973
BspANI	GGCC	3 cut(s)	1310, 1369, 1830
BspMAI	CTGCAG	1 cut(s)	2199
BspMI	ACCTGC	3 cut(s)	216, 1653, 2080
BspPI	GGATC	6 cut(s)	90, 426, 832, 1800, 2171, 2184
BspQI	GCTCTTC	1 cut(s)	2184
BspT104I	TTCGAA	1 cut(s)	437
BspT107I	GGYRCC	2 cut(s)	782, 1298
BspTI	CTTAAG	1 cut(s)	2060
BsrDI	GCAATG	2 cut(s)	984, 1208
BsrGI	TGTACA	1 cut(s)	253
BsrI	ACTGG	6 cut(s)	84, 665, 731, 786, 1003, 1904
BssECI	CCNNGG	8 cut(s)	369, 400, 407, 627, 1043, 1190, 1244, 1854
BssNI	GRCGYC	1 cut(s)	483
BssSI	CACGAG	2 cut(s)	57, 378
BssT1I	CCWWGG	3 cut(s)	400, 627, 1190
Bst2BI	CACGAG	2 cut(s)	57, 378
Bst2UI	CCWGG	5 cut(s)	370, 408, 1245, 1509, 2135
Bst4CI	ACNGT	7 cut(s)	599, 1515, 1835, 1873, 1888, 1936, 1951
Bst6I	CTCTTC	2 cut(s)	1933, 2184
BstACI	GRCGYC	1 cut(s)	483
BstAFI	CTTAAG	1 cut(s)	2060
BstAPI	GCANNNNNTGC	2 cut(s)	611, 1922
BstAUI	TGTACA	1 cut(s)	253
BstBI	TTCGAA	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	1820
BstDSI	CCRYGG	1 cut(s)	1190
BstENI	CCTNNNNNAGG	1 cut(s)	2060
BstHHI	GCGC	4 cut(s)	1347, 1447, 1498, 2118
BstMAI	GTCTC	3 cut(s)	813, 896, 1395
BstMWI	GCNNNNNNNGC	9 cut(s)	521, 611, 845, 932, 1255, 1850, 1859, 1922, 2217
BstNI	CCWGG	5 cut(s)	370, 408, 1245, 1509, 2135
BstNSI	RCATGY	1 cut(s)	1703
BstSCI	CCNGG	7 cut(s)	368, 406, 1043, 1243, 1507, 1854, 2133
BstSFI	CTRYAG	1 cut(s)	2195
BstV1I	GCAGC	2 cut(s)	1786, 2181
BstV2I	GAAGAC	2 cut(s)	737, 938
BstX2I	RGATCY	6 cut(s)	82, 418, 824, 1792, 1985, 2176
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstYI	RGATCY	6 cut(s)	82, 418, 824, 1792, 1985, 2176
BsuI	GTATCC	2 cut(s)	28, 1585
BsuRI	GGCC	3 cut(s)	1310, 1369, 1830
BtgI	CCRYGG	1 cut(s)	1190
BtrI	CACGTC	1 cut(s)	1160
BtsI	GCAGTG	1 cut(s)	1714
BtsIMutI	CAGTG	8 cut(s)	38, 573, 793, 996, 1714, 1746, 1884, 1947
BveI	ACCTGC	3 cut(s)	216, 1653, 2080
Cac8I	GCNNGC	1 cut(s)	1820
CfoI	GCGC	4 cut(s)	1347, 1447, 1498, 2118
Cfr13I	GGNCC	7 cut(s)	205, 404, 707, 1040, 1199, 1309, 2025
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	6 cut(s)	254, 783, 1120, 1299, 1516, 2128
CspCI	CAANNNNNGTGG	4 cut(s)	280, 315, 1370, 1405
CviAII	CATG	9 cut(s)	91, 257, 865, 1178, 1191, 1387, 1448, 1700, 2077
CviQI	GTAC	6 cut(s)	254, 783, 1120, 1299, 1516, 2128
DraI	TTTAAA	1 cut(s)	958
EaeI	YGGCCR	1 cut(s)	1828
Eam1104I	CTCTTC	2 cut(s)	1933, 2184
EarI	CTCTTC	2 cut(s)	1933, 2184
EciI	GGCGGA	1 cut(s)	1354
Eco130I	CCWWGG	3 cut(s)	400, 627, 1190
Eco32I	GATATC	2 cut(s)	323, 337
Eco47I	GGWCC	6 cut(s)	205, 404, 707, 1040, 1199, 2025
Eco57I	CTGAAG	4 cut(s)	446, 993, 1188, 2040
Eco88I	CYCGRG	1 cut(s)	1096
EcoNI	CCTNNNNNAGG	1 cut(s)	2060
EcoO109I	RGGNCCY	2 cut(s)	205, 1199
EcoRII	CCWGG	5 cut(s)	368, 406, 1243, 1507, 2133
EcoRV	GATATC	2 cut(s)	323, 337
EcoT14I	CCWWGG	3 cut(s)	400, 627, 1190
EcoT22I	ATGCAT	1 cut(s)	1179
ErhI	CCWWGG	3 cut(s)	400, 627, 1190
FaeI	CATG	9 cut(s)	94, 260, 868, 1181, 1194, 1390, 1451, 1703, 2080
FaqI	GGGAC	2 cut(s)	1892, 2038
FatI	CATG	9 cut(s)	90, 256, 864, 1177, 1190, 1386, 1447, 1699, 2076
FauI	CCCGC	1 cut(s)	1980
FbaI	TGATCA	1 cut(s)	73
FblI	GTMKAC	2 cut(s)	569, 1890
Fnu4HI	GCNGC	3 cut(s)	1267, 1775, 2195
Fsp4HI	GCNGC	3 cut(s)	1267, 1775, 2195
FspBI	CTAG	2 cut(s)	585, 1728
FspI	TGCGCA	3 cut(s)	1346, 1446, 2117
GlaI	GCGC	4 cut(s)	1346, 1446, 1497, 2117
GluI	GCNGC	3 cut(s)	1267, 1775, 2195
GsaI	CCCAGC	1 cut(s)	1199
GsuI	CTGGAG	4 cut(s)	352, 648, 1887, 2156
HaeIII	GGCC	3 cut(s)	1310, 1369, 1830
HapII	CCGG	2 cut(s)	1045, 1856
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	4 cut(s)	1347, 1447, 1498, 2118
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	9 cut(s)	94, 260, 868, 1181, 1194, 1390, 1451, 1703, 2080
Hin6I	GCGC	4 cut(s)	1345, 1445, 1496, 2116
HinP1I	GCGC	4 cut(s)	1345, 1445, 1496, 2116
HincII	GTYRAC	4 cut(s)	427, 1285, 1666, 1891
HindII	GTYRAC	4 cut(s)	427, 1285, 1666, 1891
HindIII	AAGCTT	1 cut(s)	1256
HpaI	GTTAAC	1 cut(s)	1666
HpaII	CCGG	2 cut(s)	1045, 1856
HphI	GGTGA	3 cut(s)	188, 1497, 2104
Hpy166II	GTNNAC	8 cut(s)	98, 166, 359, 427, 570, 1285, 1666, 1891
Hpy188III	TCNNGA	8 cut(s)	86, 241, 380, 487, 705, 1096, 1673, 2186
Hpy8I	GTNNAC	8 cut(s)	98, 166, 359, 427, 570, 1285, 1666, 1891
Hpy99I	CGWCG	1 cut(s)	945
HpyAV	CCTTC	8 cut(s)	13, 529, 760, 772, 1212, 1734, 1738, 2015
HpyCH4III	ACNGT	7 cut(s)	599, 1515, 1835, 1873, 1888, 1936, 1951
HpyCH4IV	ACGT	4 cut(s)	1159, 1287, 1567, 1659
HpyCH4V	TGCA	4 cut(s)	935, 1177, 1916, 2197
HpyF10VI	GCNNNNNNNGC	9 cut(s)	521, 611, 845, 932, 1255, 1850, 1859, 1922, 2217
HpySE526I	ACGT	4 cut(s)	1159, 1287, 1567, 1659
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	9 cut(s)	94, 260, 868, 1181, 1194, 1390, 1451, 1703, 2080
HspAI	GCGC	4 cut(s)	1345, 1445, 1496, 2116
KpnI	GGTACC	2 cut(s)	786, 1302
Ksp22I	TGATCA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	1666
LguI	GCTCTTC	1 cut(s)	2184
LmnI	GCTCC	7 cut(s)	520, 667, 737, 931, 1906, 2065, 2137
Lsp1109I	GCAGC	2 cut(s)	1786, 2181
LweI	GCATC	5 cut(s)	130, 205, 601, 1164, 1332
MaeI	CTAG	2 cut(s)	585, 1728
MaeII	ACGT	4 cut(s)	1159, 1287, 1567, 1659
MaeIII	GTNAC	9 cut(s)	3, 184, 380, 622, 724, 1503, 1709, 1936, 1999
MboII	GAAGA	9 cut(s)	182, 451, 674, 737, 938, 1857, 1920, 1980, 2201
MflI	RGATCY	6 cut(s)	82, 418, 824, 1792, 1985, 2176
MhlI	GDGCHC	1 cut(s)	1903
MlsI	TGGCCA	1 cut(s)	1830
MluCI	AATT	7 cut(s)	127, 1035, 1128, 1228, 1755, 2095, 2109
MluNI	TGGCCA	1 cut(s)	1830
MlyI	GAGTC	6 cut(s)	181, 382, 779, 898, 914, 1511
MmeI	TCCRAC	1 cut(s)	715
Mox20I	TGGCCA	1 cut(s)	1830
Mph1103I	ATGCAT	1 cut(s)	1179
MscI	TGGCCA	1 cut(s)	1830
MseI	TTAA	6 cut(s)	563, 858, 957, 1304, 1665, 2061
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	1830
MspCI	CTTAAG	1 cut(s)	2060
MspI	CCGG	2 cut(s)	1045, 1856
MspR9I	CCNGG	7 cut(s)	370, 408, 1045, 1245, 1509, 1856, 2135
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	5 cut(s)	370, 408, 1245, 1509, 2135
MwoI	GCNNNNNNNGC	9 cut(s)	521, 611, 845, 932, 1255, 1850, 1859, 1922, 2217
NciI	CCSGG	2 cut(s)	1045, 1856
NcoI	CCATGG	1 cut(s)	1190
NlaIII	CATG	9 cut(s)	94, 260, 868, 1181, 1194, 1390, 1451, 1703, 2080
NmeAIII	GCCGAG	1 cut(s)	902
NmuCI	GTSAC	7 cut(s)	184, 380, 622, 1503, 1709, 1936, 1999
NsbI	TGCGCA	3 cut(s)	1346, 1446, 2117
NsiI	ATGCAT	1 cut(s)	1179
NspI	RCATGY	1 cut(s)	1703
NspV	TTCGAA	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	1096
PaqCI	CACCTGC	1 cut(s)	2080
PciI	ACATGT	1 cut(s)	1699
PciSI	GCTCTTC	1 cut(s)	2184
PcsI	WCGNNNNNNNCGW	1 cut(s)	1156
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	9 cut(s)	494, 581, 646, 692, 964, 1421, 1438, 1582, 1607
PflFI	GACNNNGTC	1 cut(s)	1715
PflMI	CCANNNNNTGG	2 cut(s)	1037, 1335
PkrI	GCNGC	3 cut(s)	1268, 1776, 2196
PleI	GAGTC	6 cut(s)	181, 382, 778, 898, 914, 1510
PpsI	GAGTC	6 cut(s)	181, 382, 778, 898, 914, 1510
PpuMI	RGGWCCY	2 cut(s)	205, 1199
PscI	ACATGT	1 cut(s)	1699
Psp5II	RGGWCCY	2 cut(s)	205, 1199
Psp6I	CCWGG	5 cut(s)	368, 406, 1243, 1507, 2133
PspFI	CCCAGC	1 cut(s)	1195
PspGI	CCWGG	5 cut(s)	368, 406, 1243, 1507, 2133
PspPI	GGNCC	7 cut(s)	205, 404, 707, 1040, 1199, 1309, 2025
PspPPI	RGGWCCY	2 cut(s)	205, 1199
PstI	CTGCAG	1 cut(s)	2199
PsuI	RGATCY	6 cut(s)	82, 418, 824, 1792, 1985, 2176
PsyI	GACNNNGTC	1 cut(s)	1715
RsaI	GTAC	6 cut(s)	255, 784, 1121, 1300, 1517, 2129
RsaNI	GTAC	6 cut(s)	254, 783, 1120, 1299, 1516, 2128
RseI	CAYNNNNRTG	1 cut(s)	152
SalI	GTCGAC	1 cut(s)	1889
SapI	GCTCTTC	1 cut(s)	2184
SaqAI	TTAA	6 cut(s)	563, 858, 957, 1304, 1665, 2061
SatI	GCNGC	3 cut(s)	1267, 1775, 2195
Sau96I	GGNCC	7 cut(s)	205, 404, 707, 1040, 1199, 1309, 2025
SchI	GAGTC	6 cut(s)	181, 382, 779, 898, 914, 1511
ScrFI	CCNGG	7 cut(s)	370, 408, 1045, 1245, 1509, 1856, 2135
SduI	GDGCHC	1 cut(s)	1903
SfaNI	GCATC	5 cut(s)	130, 205, 601, 1164, 1332
SfcI	CTRYAG	1 cut(s)	2195
Sfr274I	CTCGAG	1 cut(s)	1096
SfuI	TTCGAA	1 cut(s)	437
SinI	GGWCC	6 cut(s)	205, 404, 707, 1040, 1199, 2025
SlaI	CTCGAG	1 cut(s)	1096
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	5 cut(s)	241, 1096, 1601, 2060, 2069
SmoI	CTYRAG	5 cut(s)	241, 1096, 1601, 2060, 2069
Sse9I	AATT	7 cut(s)	127, 1035, 1128, 1228, 1755, 2095, 2109
SsiI	CCGC	5 cut(s)	103, 416, 1267, 1339, 1973
SspMI	CTAG	2 cut(s)	585, 1728
StyD4I	CCNGG	7 cut(s)	368, 406, 1043, 1243, 1507, 1854, 2133
StyI	CCWWGG	3 cut(s)	400, 627, 1190
TaaI	ACNGT	7 cut(s)	599, 1515, 1835, 1873, 1888, 1936, 1951
TaiI	ACGT	4 cut(s)	1162, 1290, 1570, 1662
TaqI	TCGA	4 cut(s)	437, 644, 1097, 1890
TasI	AATT	7 cut(s)	127, 1035, 1128, 1228, 1755, 2095, 2109
TatI	WGTACW	3 cut(s)	253, 1119, 2127
TauI	GCSGC	1 cut(s)	1269
TfiI	GAWTC	9 cut(s)	494, 581, 646, 692, 964, 1421, 1438, 1582, 1607
Tru1I	TTAA	6 cut(s)	563, 858, 957, 1304, 1665, 2061
Tru9I	TTAA	6 cut(s)	563, 858, 957, 1304, 1665, 2061
TscAI	CASTG	8 cut(s)	45, 580, 793, 1003, 1714, 1746, 1891, 1954
TseFI	GTSAC	7 cut(s)	184, 380, 622, 1503, 1709, 1936, 1999
TseI	GCWGC	2 cut(s)	1774, 2194
Tsp45I	GTSAC	7 cut(s)	184, 380, 622, 1503, 1709, 1936, 1999
TspDTI	ATGAA	8 cut(s)	248, 548, 737, 938, 1194, 1482, 1599, 1697
TspGWI	ACGGA	2 cut(s)	344, 1045
TspRI	CASTG	8 cut(s)	45, 580, 793, 1003, 1714, 1746, 1891, 1954
Tth111I	GACNNNGTC	1 cut(s)	1715
Van91I	CCANNNNNTGG	2 cut(s)	1037, 1335
Vha464I	CTTAAG	1 cut(s)	2060
VpaK11BI	GGWCC	6 cut(s)	205, 404, 707, 1040, 1199, 2025
XagI	CCTNNNNNAGG	1 cut(s)	2060
XapI	RAATTY	2 cut(s)	2095, 2109
XceI	RCATGY	1 cut(s)	1703
XhoI	CTCGAG	1 cut(s)	1096
XmiI	GTMKAC	2 cut(s)	569, 1890
XspI	CTAG	2 cut(s)	585, 1728
Zsp2I	ATGCAT	1 cut(s)	1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.