Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007181

Physical Location & Seq

Genomic Coordinates Forward (+)

268716 .. 269158

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0002500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGACGAGAGCCACATGACTGCTAATCGCCGGCCCTTGCCTCGTCGTCTTTTCGATTCGAGAAGACGGAGCATTGCCCTCCGGATCTCCAATACGGCGTGCCGTTTCAGGTTAGGGTTTCGTGTAATGGTCTTACCGGAGCTAGATGCCCATAACCGGGGAGTTGTCACAAGAAAACATCGAAGATCGGTGATTTGGGTAGGATCGGTGCTTCCTTCATACCTTCATGTGTTCAACTTACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005829 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016043 GO:0016236 GO:0022607 GO:0031410 GO:0031982 GO:0032182 GO:0034622 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0051258 GO:0051259 GO:0061919 GO:0065003 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

N_BRCA1_IG PB1 ZZ

Protein Analysis

81

Amino Acids

9.57

Weight (kDa)

11.94

Isoelectric Point (pI)

85.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24690
fragaria_vesca	FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270
malus_domestica	MD06G1165900.v1.1 MD14G1171800.v1.1
prunus_persica	Prupe.5G165800_v2.0.a1 Prupe.5G165800_v2.0.a1 Prupe.5G165800_v2.0.a1
pyrus_communis	pycom06g14840 pycom14g14340
rosa_chinensis	RchiOBHm_Chr7g0192591
rosa_laevigata	RLG00000004349
rosa_multiflora	Rmu_sc0003108.1_g000043
rosa_roxburghii	Rroxscaffold_3G00262920
rosa_rugosa	Rorug07G0002500
rosa_samantha	Rh7AG126900 Rh7BG129200 Rh7CG131000 Rh7DG130300
rosa_wichuraiana	Rw7G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	81
AclWI	GGATC	2 cut(s)	92, 211
AfiI	CCNNNNNNNGG	2 cut(s)	156, 157
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
AlwI	GGATC	2 cut(s)	92, 211
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	87, 111
BcnI	CCSGG	1 cut(s)	158
BfaI	CTAG	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	2 cut(s)	81, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 157
Bse118I	RCCGGY	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	72
BseAI	TCCGGA	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	156, 157
BseMI	GCAATG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	34
BsiSI	CCGG	4 cut(s)	31, 82, 137, 157
BslI	CCNNNNNNNGG	2 cut(s)	156, 157
BsnI	GGCC	1 cut(s)	34
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	84, 185, 203
BspANI	GGCC	1 cut(s)	34
BspEI	TCCGGA	1 cut(s)	81
BspPI	GGATC	2 cut(s)	92, 211
BsrDI	GCAATG	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	84, 185, 203
BstC8I	GCNNGC	2 cut(s)	32, 100
BstKTI	GATC	3 cut(s)	87, 188, 206
BstMBI	GATC	3 cut(s)	84, 185, 203
BstSCI	CCNGG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	32, 100
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	2 cut(s)	16, 227
CviJI	RGCY	3 cut(s)	12, 34, 142
CviKI_1	RGCY	3 cut(s)	12, 34, 142
DpnI	GATC	3 cut(s)	86, 187, 205
DpnII	GATC	3 cut(s)	84, 185, 203
FaeI	CATG	2 cut(s)	19, 230
FaiI	YATR	4 cut(s)	17, 153, 220, 228
FatI	CATG	2 cut(s)	15, 226
FspBI	CTAG	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	4 cut(s)	31, 82, 137, 157
Hin1II	CATG	2 cut(s)	19, 230
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	4 cut(s)	31, 82, 137, 157
HphI	GGTGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	60, 82
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	225, 233
Hsp92II	CATG	2 cut(s)	19, 230
Kpn2I	TCCGGA	1 cut(s)	81
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	84, 185, 203
LmnI	GCTCC	2 cut(s)	69, 139
LpnPI	CCDG	5 cut(s)	44, 94, 95, 150, 170
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	3 cut(s)	86, 187, 205
MboI	GATC	3 cut(s)	84, 185, 203
MboII	GAAGA	2 cut(s)	75, 195
MflI	RGATCY	1 cut(s)	84
MnlI	CCTC	2 cut(s)	51, 89
MroI	TCCGGA	1 cut(s)	81
MroNI	GCCGGC	1 cut(s)	30
MspI	CCGG	4 cut(s)	31, 82, 137, 157
MspR9I	CCNGG	1 cut(s)	158
NaeI	GCCGGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	3 cut(s)	84, 185, 203
NgoMIV	GCCGGC	1 cut(s)	30
NlaIII	CATG	2 cut(s)	19, 230
NmuCI	GTSAC	1 cut(s)	166
PdiI	GCCGGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	84
Sau3AI	GATC	3 cut(s)	84, 185, 203
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	3 cut(s)	113, 144, 225
SfaNI	GCATC	1 cut(s)	136
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	156
TaqI	TCGA	3 cut(s)	54, 59, 181
TfiI	GAWTC	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	207, 215
TspGWI	ACGGA	1 cut(s)	82
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.