Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007181

Physical Location & Seq

Genomic Coordinates Reverse (-)

9531053 .. 9535264

Gene Structure 4212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG129200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGGCTTCGTCTACTATGGTGATCAAGGTCAAATATGGGGATACACTGAGGCGTTTCAATGCTCGTGTTGATGAGAATGATCAACTGGATCTTGACATGGGTGGACTGCGGTTCAAAATATATAGTCTCTTCAATTTTCAGCTTGATGCTGACATCACTATGACCTATATTGACGAAGATGGTGATATAGTGACTCTGGTTGATGACGAGGATTTGCGTGATGCTATGAGGCAGAATATGAAGTTCTTGAGGATTGATGTACATGAGAAAACTGACAAATCTGAGAAATCTTATGCCAAATCAAGTGGAAGTTCTACCCCTGTAAGATATCCCTTGCCAGATATCACCCCTGAGCCTATCCGTGAACTAATCTCCAGGGTTCCTCGTGACTTGACTCCAAATGCCCTTGGTCCAGGGTTTGCGGATCTTGTTGACTGCTTTTCGAAGATGGGAATGTCCTATTTACTTCAGGCTGGTGGAGTTTCAGGCGTCAAGAATGATTCCTCTGAGAAACCCTTAGCTCCATCTGCCAATGATATGAAGGGCGATGGTAAGTCAGAAACCATCTTAAAGTCTACCACTGAGGAATCTAGCTCTAAAAACAGTCAGGCAAAGGATGCTGTAAATGTGACCAAGGATGTGGGAATGTCGAATCCACCTCAGAATGCTCCAGTTGATCTCAATGTTCTTCCTGCTGATTCTAATCCATCCGGACCCACACCCATCAATGTTACACCAGTTGGAGCAAGTCTTCATACTGCTGAGGAGAGGAAGGAGTCAGAGAAGGTTACCGGTGGTCAGGTCAAGGGCAAGCCTCTTGGTTGTGGTGGATCTACAAGTTCTGCTATCCCTGCATTGAATGTTAATGACATGAGCAATAATCATTTCAATCAATGTCCATTTTCAGAGACTCCTATTGTGAATGACTCGGCTCCTGTTGCATATCGTCGTCTTCATCCTTTTAAAAGGAATCATTCTGAAGCAATGGGTGGTATGTTCCACACTGGTGTTCGCTGTGATGGATGTGGTTGTCATCCAATAATTGGACCCCGGTTCAAGTCCTTAGTGAAAGCAGATTATGACCTCTGCCGTATCTGTTTCTCGAGTATTGGTAATGTGGCTGAGTACATTAGAATTGACCACCCTTTGTCTTATCGCCATCCACGTCCTTTCAAGGGGATGCATGAACAACCTCCATGGATGGGTCCTTCAGCATTGCCAAAGATACTGAGAAATTGTAGCGCGAAGCCTGGGCGACCTAAGCTTGACAGCCGCTTCGTTTTGGATGTCAATGTAATGGATGGTACCTTAATGGCCCCATCTACTCCATTTACCAAGATTTGGCGGATGCGCAACAATGGGGGTTTGATCTGGCCTAAAGGAACACAACTCATGTGGATTGGTGGAGACAGGTTTAGCAAATCAGATTCAGTTGAGATAGAGATTCCTGCGCATGGTGTGTTGGCTGAAAATGAACTTGATATTGCTGTTGATTTTACTGCGCCTGAGTCACCTGGACGGTACATCTCATATTGGAGGATGGCTTCTCCATCTGGTCAGAAGTTTGGGCAACGTGTTTGGGTTCTGATTCAGGTGGATACTTCCCTCAAGGATTCATTCTTGGAGAGCTTTCAAGGTTTGAACCTGAACCTGCCCCCTGAAAACGTGGTTAACTTTCCTGAGCAAATGAACTTTCCTCAGCAACATGTGGGCAGTGACTTTGTCCAGCCTTCTAGCTCTAACTCAGTGAAGGAACCAGCAATTCCCATTCCTGAGAAGCAGCCTGAAAATGAGCAGGATCTCAACTTCCCTATAAATGATAGCTTGCTGGTTGGCCACAGTATTCCTGCCCCTACCGCCCCAGTGGCTTCTTCAACTGTGTCATACCCCACTGTCGACCAGAGTGCTCCAGCCCCTACTGCGCAAGTGGCCTCTTCAACTGTGACATACCCCACTGTTGATATATTTGAACCAGCCCCGCCCTCCCCCAGATCTTCCCCTGTTGTCACTCTACCAACATCATCTGAAGGGACCAGCTTAAAAAATCCTGTGGAGGACATCCTCCTTAAGGAGCTTGAGGAGATGGGATTTAAGCAGGTGAATTTGAACAAGGAAATTCTGCGCAGGAATGAGTACAACCTGGAGCAGTCTGTGGATGATCTCTGTGAGGTTGCTGAATGGGATCCTATTCTTGAAGAGCTGCAGGAAATGGGCTTCAGTGATACAGAGATGAACAAGAAGCTGCTTGCGAAGAACAATGGAAGCATCAAGCGTGTGGTCATGGATCTTATCAATAGGGACAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005829 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016043 GO:0016236 GO:0022607 GO:0031410 GO:0031982 GO:0032182 GO:0034622 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0051258 GO:0051259 GO:0061919 GO:0065003 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

N_BRCA1_IG PB1 ZZ

Protein Analysis

769

Amino Acids

84.6

Weight (kDa)

5.23

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	6 - 89	1.6e-09	PB1 domain
ZZ	PF00569	334 - 369	2e-09	Zinc finger, ZZ type
N_BRCA1_IG	PF16158	431 - 532	8.5e-33	Ig-like domain from next to BRCA1 gene
UBA_NBR1_C	PF24932	685 - 724	6.5e-23	Next to BRCA1 gene 1 protein-like, C-terminal UBA domain
UBA_NBR1_C	PF24932	727 - 764	4.2e-11	Next to BRCA1 gene 1 protein-like, C-terminal UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24690
fragaria_vesca	FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270 FvH4_5g06270
malus_domestica	MD06G1165900.v1.1 MD14G1171800.v1.1
prunus_persica	Prupe.5G165800_v2.0.a1 Prupe.5G165800_v2.0.a1 Prupe.5G165800_v2.0.a1
pyrus_communis	pycom06g14840 pycom14g14340
rosa_chinensis	RchiOBHm_Chr7g0192591
rosa_laevigata	RLG00000004349
rosa_multiflora	Rmu_sc0003108.1_g000043
rosa_roxburghii	Rroxscaffold_3G00262920
rosa_rugosa	Rorug07G0002500
rosa_samantha	Rh7AG126900 Rh7BG129200 Rh7CG131000 Rh7DG130300
rosa_wichuraiana	Rw7G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2086
Acc16I	TGCGCA	4 cut(s)	1352, 1452, 1923, 2123
Acc36I	ACCTGC	2 cut(s)	1659, 2086
Acc65I	GGTACC	1 cut(s)	1304
AccB1I	GGYRCC	1 cut(s)	1304
AccB7I	CCANNNNNTGG	2 cut(s)	1043, 1341
AccI	GTMKAC	3 cut(s)	11, 575, 1896
AccII	CGCG	1 cut(s)	1244
AccIII	TCCGGA	1 cut(s)	710
AciI	CCGC	6 cut(s)	109, 422, 1273, 1345, 1857, 1979
AclWI	GGATC	7 cut(s)	96, 432, 838, 1806, 2177, 2190, 2292
AcoI	YGGCCR	1 cut(s)	1834
AcsI	RAATTY	2 cut(s)	2101, 2115
AcuI	CTGAAG	5 cut(s)	452, 999, 1194, 2046, 2200
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	5 cut(s)	261, 1127, 1306, 1523, 2135
AfiI	CCNNNNNNNGG	6 cut(s)	1043, 1175, 1202, 1341, 1454, 2068
AflII	CTTAAG	1 cut(s)	2066
AflIII	ACRYGT	2 cut(s)	1573, 1705
AgeI	ACCGGT	1 cut(s)	791
AjiI	CACGTC	1 cut(s)	1166
AjnI	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2139
AleI	CACNNNNGTG	1 cut(s)	1005
Alw21I	GWGCWC	1 cut(s)	1909
Alw26I	GTCTC	3 cut(s)	131, 902, 1401
AlwI	GGATC	7 cut(s)	96, 432, 838, 1806, 2177, 2190, 2292
Ama87I	CYCGRG	1 cut(s)	1102
Aor13HI	TCCGGA	1 cut(s)	710
AoxI	GGCC	4 cut(s)	1314, 1373, 1834, 1929
ApeKI	GCWGC	3 cut(s)	1780, 2200, 2242
ApoI	RAATTY	2 cut(s)	2101, 2115
ArsI	GACNNNNNNTTYG	2 cut(s)	1259, 1291
AsiGI	ACCGGT	1 cut(s)	791
Asp718I	GGTACC	1 cut(s)	1304
AspLEI	GCGC	6 cut(s)	1244, 1353, 1453, 1504, 1924, 2124
AspS9I	GGNCC	6 cut(s)	410, 713, 1046, 1205, 1315, 2031
AsuC2I	CCSGG	1 cut(s)	1051
AsuHPI	GGTGA	5 cut(s)	31, 194, 337, 1503, 2110
AsuII	TTCGAA	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	1102
AvaII	GGWCC	5 cut(s)	410, 713, 1046, 1205, 2031
BalI	TGGCCA	1 cut(s)	1836
BamHI	GGATCC	1 cut(s)	2182
BanI	GGYRCC	1 cut(s)	1304
BauI	CACGAG	2 cut(s)	63, 384
BbsI	GAAGAC	2 cut(s)	743, 944
Bbv12I	GWGCWC	1 cut(s)	1909
BbvCI	CCTCAGC	2 cut(s)	762, 1698
BbvI	GCAGC	3 cut(s)	1792, 2187, 2229
BceAI	ACGGC	1 cut(s)	1074
BcgI	CGANNNNNNTGC	2 cut(s)	1886, 1920
BciT130I	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2141
BciVI	GTATCC	2 cut(s)	34, 1591
BclI	TGATCA	2 cut(s)	21, 79
BcnI	CCSGG	1 cut(s)	1051
BcoDI	GTCTC	3 cut(s)	131, 902, 1401
BfaI	CTAG	2 cut(s)	591, 1734
BfmI	CTRYAG	2 cut(s)	2201, 2306
BfrI	CTTAAG	1 cut(s)	2066
BfuAI	ACCTGC	2 cut(s)	1659, 2086
BfuI	GTATCC	2 cut(s)	34, 1591
BglI	GCCNNNNNGGC	1 cut(s)	1865
BglII	AGATCT	1 cut(s)	1991
BisI	GCNGC	4 cut(s)	1273, 1781, 2201, 2243
BlsI	GCNGC	4 cut(s)	1274, 1782, 2202, 2244
Bme1390I	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2141
Bme18I	GGWCC	5 cut(s)	410, 713, 1046, 1205, 2031
BmeT110I	CYCGRG	1 cut(s)	1102
BmgBI	CACGTC	1 cut(s)	1166
BmgT120I	GGNCC	6 cut(s)	410, 713, 1046, 1205, 1315, 2031
BmrFI	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2141
BmrI	ACTGGG	1 cut(s)	1856
BmsI	GCATC	6 cut(s)	136, 211, 607, 1170, 1338, 2274
BmuI	ACTGGG	1 cut(s)	1856
BpiI	GAAGAC	2 cut(s)	743, 944
BpmI	CTGGAG	4 cut(s)	358, 654, 1893, 2162
Bpu10I	CCTNAGC	6 cut(s)	351, 517, 762, 1260, 1680, 1698
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	3 cut(s)	268, 1592, 2096
BpuMI	CCSGG	1 cut(s)	1051
BsaBI	GATNNNNATC	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	489
BsaJI	CCNNGG	7 cut(s)	375, 406, 413, 633, 1049, 1196, 1250
BsaWI	WCCGGW	2 cut(s)	710, 791
Bsc4I	CCNNNNNNNGG	6 cut(s)	1043, 1175, 1202, 1341, 1454, 2068
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	5 cut(s)	90, 671, 737, 1009, 1862
Bse3DI	GCAATG	2 cut(s)	990, 1214
Bse8I	GATNNNNATC	1 cut(s)	702
BseAI	TCCGGA	1 cut(s)	710
BseBI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2141
BseDI	CCNNGG	7 cut(s)	375, 406, 413, 633, 1049, 1196, 1250
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	6 cut(s)	1043, 1175, 1202, 1341, 1454, 2068
BseMI	GCAATG	2 cut(s)	990, 1214
BseNI	ACTGG	5 cut(s)	90, 671, 737, 1009, 1862
BseRI	GAGGAG	2 cut(s)	779, 2093
BseXI	GCAGC	3 cut(s)	1792, 2187, 2229
Bsh1236I	CGCG	1 cut(s)	1244
BshFI	GGCC	4 cut(s)	1316, 1375, 1836, 1931
BshNI	GGYRCC	1 cut(s)	1304
BshTI	ACCGGT	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	1909
BsiHKCI	CYCGRG	1 cut(s)	1102
BsiSI	CCGG	3 cut(s)	711, 792, 1051
BslFI	GGGAC	1 cut(s)	2044
BslI	CCNNNNNNNGG	6 cut(s)	1043, 1175, 1202, 1341, 1454, 2068
BsmAI	GTCTC	3 cut(s)	131, 902, 1401
BsmFI	GGGAC	1 cut(s)	2044
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	4 cut(s)	1316, 1375, 1836, 1931
BsoBI	CYCGRG	1 cut(s)	1102
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	1909
Bsp13I	TCCGGA	1 cut(s)	710
Bsp1407I	TGTACA	1 cut(s)	259
Bsp19I	CCATGG	1 cut(s)	1196
BspACI	CCGC	6 cut(s)	109, 422, 1273, 1345, 1857, 1979
BspANI	GGCC	4 cut(s)	1316, 1375, 1836, 1931
BspEI	TCCGGA	1 cut(s)	710
BspFNI	CGCG	1 cut(s)	1244
BspMAI	CTGCAG	1 cut(s)	2205
BspMI	ACCTGC	2 cut(s)	1659, 2086
BspPI	GGATC	7 cut(s)	96, 432, 838, 1806, 2177, 2190, 2292
BspQI	GCTCTTC	1 cut(s)	2190
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	1304
BspTI	CTTAAG	1 cut(s)	2066
BsrDI	GCAATG	2 cut(s)	990, 1214
BsrFI	RCCGGY	1 cut(s)	791
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	5 cut(s)	90, 671, 737, 1009, 1862
BssAI	RCCGGY	1 cut(s)	791
BssECI	CCNNGG	7 cut(s)	375, 406, 413, 633, 1049, 1196, 1250
BssNI	GRCGYC	1 cut(s)	489
BssSI	CACGAG	2 cut(s)	63, 384
BssT1I	CCWWGG	3 cut(s)	406, 633, 1196
Bst2BI	CACGAG	2 cut(s)	63, 384
Bst2UI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2141
Bst4CI	ACNGT	7 cut(s)	605, 1521, 1841, 1879, 1894, 1942, 1957
Bst6I	CTCTTC	3 cut(s)	134, 1939, 2190
BstACI	GRCGYC	1 cut(s)	489
BstAFI	CTTAAG	1 cut(s)	2066
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstAUI	TGTACA	1 cut(s)	259
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	812, 1826, 2247
BstDSI	CCRYGG	1 cut(s)	1196
BstEII	GGTNACC	1 cut(s)	787
BstENI	CCTNNNNNAGG	1 cut(s)	2066
BstFNI	CGCG	1 cut(s)	1244
BstHHI	GCGC	6 cut(s)	1244, 1353, 1453, 1504, 1924, 2124
BstMAI	GTCTC	3 cut(s)	131, 902, 1401
BstMWI	GCNNNNNNNGC	9 cut(s)	527, 617, 851, 938, 1261, 1856, 1865, 1919, 1928
BstNI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2141
BstNSI	RCATGY	1 cut(s)	1709
BstPI	GGTNACC	1 cut(s)	787
BstSCI	CCNGG	6 cut(s)	374, 412, 1049, 1249, 1513, 2139
BstSFI	CTRYAG	2 cut(s)	2201, 2306
BstUI	CGCG	1 cut(s)	1244
BstV1I	GCAGC	3 cut(s)	1792, 2187, 2229
BstV2I	GAAGAC	2 cut(s)	743, 944
BstX2I	RGATCY	7 cut(s)	88, 424, 830, 1798, 1991, 2182, 2284
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	7 cut(s)	88, 424, 830, 1798, 1991, 2182, 2284
BsuI	GTATCC	2 cut(s)	34, 1591
BsuRI	GGCC	4 cut(s)	1316, 1375, 1836, 1931
BtgI	CCRYGG	1 cut(s)	1196
BtgZI	GCGATG	1 cut(s)	561
BtrI	CACGTC	1 cut(s)	1166
BtsI	GCAGTG	1 cut(s)	1720
BtsIMutI	CAGTG	9 cut(s)	44, 579, 1002, 1720, 1752, 1869, 1890, 1953, 2224
BveI	ACCTGC	2 cut(s)	1659, 2086
Cac8I	GCNNGC	3 cut(s)	812, 1826, 2247
CfoI	GCGC	6 cut(s)	1244, 1353, 1453, 1504, 1924, 2124
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	6 cut(s)	410, 713, 1046, 1205, 1315, 2031
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	5 cut(s)	260, 1126, 1305, 1522, 2134
CspAI	ACCGGT	1 cut(s)	791
CspCI	CAANNNNNGTGG	4 cut(s)	286, 321, 1376, 1411
CviAII	CATG	9 cut(s)	97, 263, 871, 1184, 1197, 1393, 1454, 1706, 2281
CviQI	GTAC	5 cut(s)	260, 1126, 1305, 1522, 2134
DraI	TTTAAA	1 cut(s)	964
EaeI	YGGCCR	1 cut(s)	1834
Eam1104I	CTCTTC	3 cut(s)	134, 1939, 2190
EarI	CTCTTC	3 cut(s)	134, 1939, 2190
EciI	GGCGGA	1 cut(s)	1360
Eco130I	CCWWGG	3 cut(s)	406, 633, 1196
Eco32I	GATATC	2 cut(s)	329, 343
Eco47I	GGWCC	5 cut(s)	410, 713, 1046, 1205, 2031
Eco57I	CTGAAG	5 cut(s)	452, 999, 1194, 2046, 2200
Eco88I	CYCGRG	1 cut(s)	1102
Eco91I	GGTNACC	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	2066
EcoO109I	RGGNCCY	1 cut(s)	1205
EcoO65I	GGTNACC	1 cut(s)	787
EcoRII	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2139
EcoRV	GATATC	2 cut(s)	329, 343
EcoT14I	CCWWGG	3 cut(s)	406, 633, 1196
EcoT22I	ATGCAT	1 cut(s)	1185
ErhI	CCWWGG	3 cut(s)	406, 633, 1196
FaeI	CATG	9 cut(s)	100, 266, 874, 1187, 1200, 1396, 1457, 1709, 2284
FaqI	GGGAC	1 cut(s)	2044
FatI	CATG	9 cut(s)	96, 262, 870, 1183, 1196, 1392, 1453, 1705, 2280
FauI	CCCGC	1 cut(s)	1986
FbaI	TGATCA	2 cut(s)	21, 79
FblI	GTMKAC	3 cut(s)	11, 575, 1896
Fnu4HI	GCNGC	4 cut(s)	1273, 1781, 2201, 2243
Fsp4HI	GCNGC	4 cut(s)	1273, 1781, 2201, 2243
FspBI	CTAG	2 cut(s)	591, 1734
FspI	TGCGCA	4 cut(s)	1352, 1452, 1923, 2123
GlaI	GCGC	6 cut(s)	1243, 1352, 1452, 1503, 1923, 2123
GluI	GCNGC	4 cut(s)	1273, 1781, 2201, 2243
GsuI	CTGGAG	4 cut(s)	358, 654, 1893, 2162
HaeIII	GGCC	4 cut(s)	1316, 1375, 1836, 1931
HapII	CCGG	3 cut(s)	711, 792, 1051
HgaI	GACGC	1 cut(s)	478
HhaI	GCGC	6 cut(s)	1244, 1353, 1453, 1504, 1924, 2124
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	9 cut(s)	100, 266, 874, 1187, 1200, 1396, 1457, 1709, 2284
Hin6I	GCGC	6 cut(s)	1242, 1351, 1451, 1502, 1922, 2122
HinP1I	GCGC	6 cut(s)	1242, 1351, 1451, 1502, 1922, 2122
HincII	GTYRAC	3 cut(s)	433, 1672, 1897
HindII	GTYRAC	3 cut(s)	433, 1672, 1897
HindIII	AAGCTT	1 cut(s)	1262
HpaI	GTTAAC	1 cut(s)	1672
HpaII	CCGG	3 cut(s)	711, 792, 1051
HphI	GGTGA	5 cut(s)	31, 194, 337, 1503, 2110
Hpy166II	GTNNAC	7 cut(s)	12, 104, 365, 433, 576, 1672, 1897
Hpy188III	TCNNGA	9 cut(s)	92, 247, 386, 493, 711, 1102, 1679, 1772, 2192
Hpy8I	GTNNAC	7 cut(s)	12, 104, 365, 433, 576, 1672, 1897
Hpy99I	CGWCG	1 cut(s)	951
HpyAV	CCTTC	7 cut(s)	535, 766, 778, 1218, 1740, 1744, 2021
HpyCH4III	ACNGT	7 cut(s)	605, 1521, 1841, 1879, 1894, 1942, 1957
HpyCH4IV	ACGT	3 cut(s)	1165, 1573, 1665
HpyCH4V	TGCA	4 cut(s)	854, 941, 1183, 2203
HpyF10VI	GCNNNNNNNGC	9 cut(s)	527, 617, 851, 938, 1261, 1856, 1865, 1919, 1928
HpySE526I	ACGT	3 cut(s)	1165, 1573, 1665
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	9 cut(s)	100, 266, 874, 1187, 1200, 1396, 1457, 1709, 2284
HspAI	GCGC	6 cut(s)	1242, 1351, 1451, 1502, 1922, 2122
Kpn2I	TCCGGA	1 cut(s)	710
KpnI	GGTACC	1 cut(s)	1308
Ksp22I	TGATCA	2 cut(s)	21, 79
KspAI	GTTAAC	1 cut(s)	1672
LguI	GCTCTTC	1 cut(s)	2190
LmnI	GCTCC	7 cut(s)	526, 673, 743, 937, 1912, 2071, 2143
Lsp1109I	GCAGC	3 cut(s)	1792, 2187, 2229
LweI	GCATC	6 cut(s)	136, 211, 607, 1170, 1338, 2274
MaeI	CTAG	2 cut(s)	591, 1734
MaeII	ACGT	3 cut(s)	1165, 1573, 1665
MaeIII	GTNAC	9 cut(s)	190, 386, 628, 730, 787, 1509, 1715, 1942, 2005
MflI	RGATCY	7 cut(s)	88, 424, 830, 1798, 1991, 2182, 2284
MhlI	GDGCHC	1 cut(s)	1909
MlsI	TGGCCA	1 cut(s)	1836
MluCI	AATT	7 cut(s)	133, 1041, 1134, 1234, 1761, 2101, 2115
MluNI	TGGCCA	1 cut(s)	1836
MlyI	GAGTC	6 cut(s)	187, 388, 785, 904, 920, 1517
MmeI	TCCRAC	1 cut(s)	721
Mox20I	TGGCCA	1 cut(s)	1836
Mph1103I	ATGCAT	1 cut(s)	1185
MroI	TCCGGA	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	1836
MseI	TTAA	8 cut(s)	569, 864, 963, 1310, 1671, 2039, 2067, 2091
MslI	CAYNNNNRTG	2 cut(s)	158, 1005
Msp20I	TGGCCA	1 cut(s)	1836
MspCI	CTTAAG	1 cut(s)	2066
MspI	CCGG	3 cut(s)	711, 792, 1051
MspR9I	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2141
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	5 cut(s)	376, 414, 1251, 1515, 2141
MvnI	CGCG	1 cut(s)	1244
MwoI	GCNNNNNNNGC	9 cut(s)	527, 617, 851, 938, 1261, 1856, 1865, 1919, 1928
NciI	CCSGG	1 cut(s)	1051
NcoI	CCATGG	1 cut(s)	1196
NlaIII	CATG	9 cut(s)	100, 266, 874, 1187, 1200, 1396, 1457, 1709, 2284
NmeAIII	GCCGAG	1 cut(s)	908
NmuCI	GTSAC	7 cut(s)	190, 386, 628, 1509, 1715, 1942, 2005
NsbI	TGCGCA	4 cut(s)	1352, 1452, 1923, 2123
NsiI	ATGCAT	1 cut(s)	1185
NspI	RCATGY	1 cut(s)	1709
NspV	TTCGAA	1 cut(s)	443
OliI	CACNNNNGTG	1 cut(s)	1005
PaeR7I	CTCGAG	1 cut(s)	1102
PaqCI	CACCTGC	1 cut(s)	2086
PciI	ACATGT	1 cut(s)	1705
PciSI	GCTCTTC	1 cut(s)	2190
PcsI	WCGNNNNNNNCGW	1 cut(s)	1162
PctI	GAATGC	1 cut(s)	670
PfeI	GAWTC	9 cut(s)	500, 587, 652, 698, 970, 1427, 1444, 1588, 1613
PflFI	GACNNNGTC	1 cut(s)	1721
PflMI	CCANNNNNTGG	2 cut(s)	1043, 1341
PinAI	ACCGGT	1 cut(s)	791
PkrI	GCNGC	4 cut(s)	1274, 1782, 2202, 2244
PleI	GAGTC	6 cut(s)	187, 388, 784, 904, 920, 1516
PpsI	GAGTC	6 cut(s)	187, 388, 784, 904, 920, 1516
PpuMI	RGGWCCY	1 cut(s)	1205
PscI	ACATGT	1 cut(s)	1705
Psp5II	RGGWCCY	1 cut(s)	1205
Psp6I	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2139
PspEI	GGTNACC	1 cut(s)	787
PspGI	CCWGG	5 cut(s)	374, 412, 1249, 1513, 2139
PspPI	GGNCC	6 cut(s)	410, 713, 1046, 1205, 1315, 2031
PspPPI	RGGWCCY	1 cut(s)	1205
PstI	CTGCAG	1 cut(s)	2205
PsuI	RGATCY	7 cut(s)	88, 424, 830, 1798, 1991, 2182, 2284
PsyI	GACNNNGTC	1 cut(s)	1721
RsaI	GTAC	5 cut(s)	261, 1127, 1306, 1523, 2135
RsaNI	GTAC	5 cut(s)	260, 1126, 1305, 1522, 2134
RseI	CAYNNNNRTG	2 cut(s)	158, 1005
SalI	GTCGAC	1 cut(s)	1895
SapI	GCTCTTC	1 cut(s)	2190
SaqAI	TTAA	8 cut(s)	569, 864, 963, 1310, 1671, 2039, 2067, 2091
SatI	GCNGC	4 cut(s)	1273, 1781, 2201, 2243
Sau96I	GGNCC	6 cut(s)	410, 713, 1046, 1205, 1315, 2031
SchI	GAGTC	6 cut(s)	187, 388, 785, 904, 920, 1517
ScrFI	CCNGG	6 cut(s)	376, 414, 1051, 1251, 1515, 2141
SduI	GDGCHC	1 cut(s)	1909
SfaNI	GCATC	6 cut(s)	136, 211, 607, 1170, 1338, 2274
SfcI	CTRYAG	2 cut(s)	2201, 2306
Sfr274I	CTCGAG	1 cut(s)	1102
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	5 cut(s)	410, 713, 1046, 1205, 2031
SlaI	CTCGAG	1 cut(s)	1102
SmiMI	CAYNNNNRTG	2 cut(s)	158, 1005
SmlI	CTYRAG	5 cut(s)	247, 1102, 1607, 2066, 2075
SmoI	CTYRAG	5 cut(s)	247, 1102, 1607, 2066, 2075
Sse9I	AATT	7 cut(s)	133, 1041, 1134, 1234, 1761, 2101, 2115
SsiI	CCGC	6 cut(s)	109, 422, 1273, 1345, 1857, 1979
SspMI	CTAG	2 cut(s)	591, 1734
StyD4I	CCNGG	6 cut(s)	374, 412, 1049, 1249, 1513, 2139
StyI	CCWWGG	3 cut(s)	406, 633, 1196
TaaI	ACNGT	7 cut(s)	605, 1521, 1841, 1879, 1894, 1942, 1957
TaiI	ACGT	3 cut(s)	1168, 1576, 1668
TaqI	TCGA	4 cut(s)	443, 650, 1103, 1896
TasI	AATT	7 cut(s)	133, 1041, 1134, 1234, 1761, 2101, 2115
TatI	WGTACW	3 cut(s)	259, 1125, 2133
TauI	GCSGC	1 cut(s)	1275
TfiI	GAWTC	9 cut(s)	500, 587, 652, 698, 970, 1427, 1444, 1588, 1613
Tru1I	TTAA	8 cut(s)	569, 864, 963, 1310, 1671, 2039, 2067, 2091
Tru9I	TTAA	8 cut(s)	569, 864, 963, 1310, 1671, 2039, 2067, 2091
TscAI	CASTG	9 cut(s)	51, 586, 1009, 1720, 1752, 1869, 1897, 1960, 2224
TseFI	GTSAC	7 cut(s)	190, 386, 628, 1509, 1715, 1942, 2005
TseI	GCWGC	3 cut(s)	1780, 2200, 2242
Tsp45I	GTSAC	7 cut(s)	190, 386, 628, 1509, 1715, 1942, 2005
TspDTI	ATGAA	9 cut(s)	254, 554, 743, 944, 1200, 1488, 1605, 1703, 2246
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	9 cut(s)	51, 586, 1009, 1720, 1752, 1869, 1897, 1960, 2224
Tth111I	GACNNNGTC	1 cut(s)	1721
Van91I	CCANNNNNTGG	2 cut(s)	1043, 1341
Vha464I	CTTAAG	1 cut(s)	2066
VpaK11BI	GGWCC	5 cut(s)	410, 713, 1046, 1205, 2031
XagI	CCTNNNNNAGG	1 cut(s)	2066
XapI	RAATTY	2 cut(s)	2101, 2115
XceI	RCATGY	1 cut(s)	1709
XhoI	CTCGAG	1 cut(s)	1102
XmiI	GTMKAC	3 cut(s)	11, 575, 1896
XspI	CTAG	2 cut(s)	591, 1734
Zsp2I	ATGCAT	1 cut(s)	1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.