MD07G1085200.v1.1

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013479
Physical Location & Seq
Forward (+)
8790661 .. 8796670
6010 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1085200.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGATGACGCCAGTGTGCCCATTCGCGAAAGCCGGTCGGCCATCAGAGCCAAGCAAGAAAGAGACCTCAGCTGACACCGCTACAATTCCCCCAAAATGCCCCTTGGGTTACGATTCTCAGACCTTCAAGCTTGGCCCTCTCAGCTGTATGATTTGCCACGCCCTTATGTTCGACTCTGCCAAATGCGTCCCTTGTTCTCACTCCTTCTGCCAAGCTTGTATATCAAGGTTCAAGGATTGTCCTTTGTGTGGAGCTGACATTGAGAAGATTGAAGCCGACTCGAATCTTCAGGGTTTGGTGGATCGCTTCATTGAAGGCCATGCCCGAATCAAGAGGTCTCATAATGCAGAGGATAATCAGGATTCAACAAATGACAGTAACAAGAATGAGGATAAGAATAACAAGAGAGTTATATACGAAGACGTGTCTTTGGAGAGAGGGGCTTTCTTGGTGCAACAGGCCATGAGGGCATTCCGAGCCCAGAATATAGAAAGTGCCAAATCTAGACTTAGTCTTTGTGCAGAAGACATCAGAGGTCAGTTAGAAACGATGGGTAACACATCAGAGTTGTGTTCTCAGCTTGGAGCGGTTCTCGGGATGCTTGGCGACTGCTGTCGGGCTACAGGAGATGCTGGTTCTGCAGTCAGTTACTTTGAAGAGAGTGTTGAGTTTCTTTCAAAACTGCCAAGAAATGATCGGGAGATAATGCATACACTCTCTATTTCACTTAATAAAATTGGAGATCTCAAATATTATGACGGAGACCTCAAATCTGCACGATCTTACTACTTCCAGTCGTTGAATGTTCGACGTGATGCTGTCAAGCATGATCCAAATGTTCCATCCCAGATTCTGGATCTAGCCGTTTCATTTGCAAAAGTTGCAGACGTTGACAGGAATCTAGGGGACGAGGATGTGGCAGTTGATGAATTTGAAGAAGGCATAAAATTGTTGGAATCTTTGACATTAAAATCCGAAGAGAGTGCCCTTGAGCAACGGCGGCTTTCAGTGATGGAGTTCCTTAAAAGTCAAATTGCGGAGAAGCAAACATCTGACGTCGGTTCTGCCCCTGAAGAAAGAACCGCAGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000209 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006355 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010468 GO:0010556 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030163 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051341 GO:0051353 GO:0051603 GO:0051726 GO:0060255 GO:0060968 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1902551 GO:1902553 GO:1903047 GO:1903506 GO:2000112 GO:2000468 GO:2000470 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_12 TPR_7 TPR_8 zf-C3HC4_3

Protein Analysis

365

Amino Acids

40.22

Weight (kDa)

5.05

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54360 AT3G54360
fragaria_vesca FvH4_7g04620 FvH4_7g04620
malus_domestica MD07G1085200.v1.1
prunus_persica Prupe.2G051700_v2.0.a1
pyrus_communis pycom07g03790
rosa_chinensis RchiOBHm_Chr1g0330051
rosa_laevigata RLG00000029838
rosa_multiflora Rmu_sc0009365.1_g000027
rosa_roxburghii Rroxscaffold_4G00320410
rosa_rugosa Rorug01G0085400
rosa_samantha Rh1AG104000 Rh1BG082400 Rh1CG098900 Rh1DG106100
rosa_wichuraiana Rw0G013520 Rw1G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1059
AccB7I CCANNNNNTGG 1 cut(s) 853
AccBSI CCGCTC 1 cut(s) 587
AccII CGCG 1 cut(s) 26
AciI CCGC 5 cut(s) 78, 587, 1000, 1037, 1083
AclWI GGATC 3 cut(s) 309, 824, 864
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 929
AcuI CTGAAG 2 cut(s) 272, 1092
AcyI GRCGYC 2 cut(s) 8, 1056
AfiI CCNNNNNNNGG 2 cut(s) 248, 853
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 9 cut(s) 127, 232, 272, 314, 366, 656, 678, 802, 935
AjiI CACGTC 2 cut(s) 424, 812
AluBI AGCT 6 cut(s) 71, 130, 144, 215, 254, 580
AluI AGCT 6 cut(s) 71, 130, 144, 215, 254, 580
Alw26I GTCTC 3 cut(s) 56, 342, 756
AlwI GGATC 3 cut(s) 309, 824, 864
AlwNI CAGNNNCTG 1 cut(s) 853
Ama87I CYCGRG 1 cut(s) 593
AoxI GGCC 4 cut(s) 38, 133, 316, 459
ApoI RAATTY 1 cut(s) 929
ArsI GACNNNNNNTTYG 2 cut(s) 498, 530
AspS9I GGNCC 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 593
BaeGI GKGCMC 2 cut(s) 20, 988
BanII GRGCYC 1 cut(s) 481
BbsI GAAGAC 2 cut(s) 426, 531
BbvCI CCTCAGC 1 cut(s) 67
BccI CCATC 4 cut(s) 49, 544, 850, 1006
BceAI ACGGC 2 cut(s) 848, 1013
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BcoDI GTCTC 3 cut(s) 56, 342, 756
BfaI CTAG 4 cut(s) 504, 860, 902, 1093
BfmI CTRYAG 2 cut(s) 621, 639
BglI GCCNNNNNGGC 1 cut(s) 467
BglII AGATCT 2 cut(s) 742, 1089
BisI GCNGC 1 cut(s) 1001
BlsI GCNGC 1 cut(s) 1002
BmeT110I CYCGRG 1 cut(s) 593
BmgBI CACGTC 2 cut(s) 424, 812
BmgT120I GGNCC 1 cut(s) 134
BmsI GCATC 3 cut(s) 588, 619, 805
BoxI GACNNNNGTC 1 cut(s) 612
BpiI GAAGAC 2 cut(s) 426, 531
BplI GAGNNNNNCTC 2 cut(s) 576, 608
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 1010
BsaHI GRCGYC 2 cut(s) 8, 1056
BsaI GGTCTC 3 cut(s) 56, 342, 756
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 853
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 11, 793
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 3 cut(s) 603, 842, 919
BseLI CCNNNNNNNGG 2 cut(s) 248, 853
BseMII CTCAG 4 cut(s) 81, 131, 154, 590
BseNI ACTGG 2 cut(s) 11, 793
BseSI GKGCMC 2 cut(s) 20, 988
BsgI GTGCAG 2 cut(s) 540, 759
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 4 cut(s) 40, 135, 318, 461
BsiEI CGRYCG 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 2 cut(s) 173, 920
BslI CCNNNNNNNGG 2 cut(s) 248, 853
BsmAI GTCTC 3 cut(s) 56, 342, 756
BsmFI GGGAC 2 cut(s) 173, 920
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 4 cut(s) 40, 135, 318, 461
Bso31I GGTCTC 3 cut(s) 56, 342, 756
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 3 cut(s) 20, 481, 988
Bsp143I GATC 7 cut(s) 301, 694, 742, 779, 829, 856, 1089
Bsp68I TCGCGA 1 cut(s) 26
BspACI CCGC 5 cut(s) 78, 587, 1000, 1037, 1083
BspANI GGCC 4 cut(s) 40, 135, 318, 461
BspCNI CTCAG 4 cut(s) 80, 130, 153, 589
BspFNI CGCG 1 cut(s) 26
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 3 cut(s) 309, 824, 864
BspTNI GGTCTC 3 cut(s) 56, 342, 756
BsrBI CCGCTC 1 cut(s) 587
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 2 cut(s) 11, 793
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 7 cut(s) 301, 694, 742, 779, 829, 856, 1089
BssNI GRCGYC 2 cut(s) 8, 1056
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 651, 972
BstACI GRCGYC 2 cut(s) 8, 1056
BstAPI GCANNNNNTGC 1 cut(s) 881
BstDEI CTNAG 5 cut(s) 67, 117, 140, 509, 576
BstF5I GGATG 3 cut(s) 603, 842, 919
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 7 cut(s) 304, 697, 745, 782, 832, 859, 1092
BstMAI GTCTC 3 cut(s) 56, 342, 756
BstMBI GATC 7 cut(s) 301, 694, 742, 779, 829, 856, 1089
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 8 cut(s) 46, 77, 141, 467, 476, 638, 881, 1000
BstPAI GACNNNNGTC 1 cut(s) 612
BstSFI CTRYAG 2 cut(s) 621, 639
BstSLI GKGCMC 2 cut(s) 20, 988
BstUI CGCG 1 cut(s) 26
BstV2I GAAGAC 2 cut(s) 426, 531
BstX2I RGATCY 3 cut(s) 742, 856, 1089
BstYI RGATCY 3 cut(s) 742, 856, 1089
BsuRI GGCC 4 cut(s) 40, 135, 318, 461
BtrI CACGTC 2 cut(s) 424, 812
BtsCI GGATG 3 cut(s) 603, 842, 919
BtsIMutI CAGTG 2 cut(s) 18, 1014
BtuMI TCGCGA 1 cut(s) 26
CaiI CAGNNNCTG 1 cut(s) 853
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 134
CseI GACGC 2 cut(s) 16, 175
CviAII CATG 3 cut(s) 320, 463, 827
DdeI CTNAG 5 cut(s) 67, 117, 140, 509, 576
DpnI GATC 7 cut(s) 303, 696, 744, 781, 831, 858, 1091
DpnII GATC 7 cut(s) 301, 694, 742, 779, 829, 856, 1089
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 2 cut(s) 651, 972
EarI CTCTTC 2 cut(s) 651, 972
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 481
Eco31I GGTCTC 3 cut(s) 56, 342, 756
Eco57I CTGAAG 2 cut(s) 272, 1092
Eco88I CYCGRG 1 cut(s) 593
EcoT14I CCWWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 3 cut(s) 323, 466, 830
FaqI GGGAC 2 cut(s) 173, 920
FatI CATG 3 cut(s) 319, 462, 826
Fnu4HI GCNGC 1 cut(s) 1001
FokI GGATG 3 cut(s) 610, 829, 926
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 1 cut(s) 1001
FspBI CTAG 4 cut(s) 504, 860, 902, 1093
GluI GCNGC 1 cut(s) 1001
HaeIII GGCC 4 cut(s) 40, 135, 318, 461
HapII CCGG 1 cut(s) 33
HgaI GACGC 2 cut(s) 16, 175
Hin1I GRCGYC 2 cut(s) 8, 1056
Hin1II CATG 3 cut(s) 323, 466, 830
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 2 cut(s) 128, 213
HinfI GANTC 9 cut(s) 113, 173, 278, 283, 327, 362, 850, 898, 956
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 892
Hpy188I TCNGA 7 cut(s) 46, 120, 476, 533, 565, 976, 1054
Hpy188III TCNNGA 7 cut(s) 25, 331, 359, 504, 595, 698, 854
Hpy8I GTNNAC 1 cut(s) 892
Hpy99I CGWCG 2 cut(s) 813, 1061
HpyAV CCTTC 4 cut(s) 133, 214, 308, 932
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 4 cut(s) 423, 811, 888, 1056
HpyCH4V TGCA 8 cut(s) 347, 454, 521, 641, 709, 776, 875, 884
HpyF10VI GCNNNNNNNGC 8 cut(s) 46, 77, 141, 467, 476, 638, 881, 1000
HpyF3I CTNAG 5 cut(s) 67, 117, 140, 509, 576
HpySE526I ACGT 4 cut(s) 423, 811, 888, 1056
Hsp92I GRCGYC 2 cut(s) 8, 1056
Hsp92II CATG 3 cut(s) 323, 466, 830
Kzo9I GATC 7 cut(s) 301, 694, 742, 779, 829, 856, 1089
LmnI GCTCC 2 cut(s) 251, 584
LweI GCATC 3 cut(s) 588, 619, 805
MaeI CTAG 4 cut(s) 504, 860, 902, 1093
MaeII ACGT 4 cut(s) 423, 811, 888, 1056
MaeIII GTNAC 4 cut(s) 107, 377, 554, 647
MalI GATC 7 cut(s) 303, 696, 744, 781, 831, 858, 1091
MbiI CCGCTC 1 cut(s) 587
MboI GATC 7 cut(s) 301, 694, 742, 779, 829, 856, 1089
MboII GAAGA 8 cut(s) 277, 278, 431, 536, 668, 947, 989, 1085
MflI RGATCY 3 cut(s) 742, 856, 1089
MhlI GDGCHC 3 cut(s) 20, 481, 988
MluCI AATT 5 cut(s) 84, 735, 929, 947, 1032
MlyI GAGTC 2 cut(s) 167, 272
MmeI TCCRAC 1 cut(s) 933
Mph1103I ATGCAT 1 cut(s) 711
MseI TTAA 3 cut(s) 729, 968, 1023
MspA1I CMGCKG 2 cut(s) 71, 144
MspI CCGG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 470
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 8 cut(s) 46, 77, 141, 467, 476, 638, 881, 1000
NdeII GATC 7 cut(s) 301, 694, 742, 779, 829, 856, 1089
NlaIII CATG 3 cut(s) 323, 466, 830
NruI TCGCGA 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 711
PctI GAATGC 1 cut(s) 470
PfeI GAWTC 7 cut(s) 113, 283, 327, 362, 850, 898, 956
PflFI GACNNNGTC 1 cut(s) 510
PflMI CCANNNNNTGG 1 cut(s) 853
PkrI GCNGC 1 cut(s) 1002
PleI GAGTC 2 cut(s) 167, 272
PpsI GAGTC 2 cut(s) 167, 272
PshAI GACNNNNGTC 1 cut(s) 612
PspPI GGNCC 1 cut(s) 134
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 853
PsuI RGATCY 3 cut(s) 742, 856, 1089
PsyI GACNNNGTC 1 cut(s) 510
PvuII CAGCTG 2 cut(s) 71, 144
RruI TCGCGA 1 cut(s) 26
SaqAI TTAA 3 cut(s) 729, 968, 1023
SatI GCNGC 1 cut(s) 1001
Sau3AI GATC 7 cut(s) 301, 694, 742, 779, 829, 856, 1089
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 2 cut(s) 167, 272
SduI GDGCHC 3 cut(s) 20, 481, 988
SfaNI GCATC 3 cut(s) 588, 619, 805
SfcI CTRYAG 2 cut(s) 621, 639
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
Sse9I AATT 5 cut(s) 84, 735, 929, 947, 1032
SsiI CCGC 5 cut(s) 78, 587, 1000, 1037, 1083
SspI AATATT 1 cut(s) 752
SspMI CTAG 4 cut(s) 504, 860, 902, 1093
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 4 cut(s) 426, 814, 891, 1059
TaqI TCGA 3 cut(s) 171, 281, 808
TasI AATT 5 cut(s) 84, 735, 929, 947, 1032
TauI GCSGC 1 cut(s) 1003
TfiI GAWTC 7 cut(s) 113, 283, 327, 362, 850, 898, 956
Tru1I TTAA 3 cut(s) 729, 968, 1023
Tru9I TTAA 3 cut(s) 729, 968, 1023
TscAI CASTG 2 cut(s) 18, 1014
TspDTI ATGAA 3 cut(s) 298, 858, 942
TspGWI ACGGA 1 cut(s) 774
TspRI CASTG 2 cut(s) 18, 1014
Tth111I GACNNNGTC 1 cut(s) 510
Van91I CCANNNNNTGG 1 cut(s) 853
XapI RAATTY 1 cut(s) 929
XbaI TCTAGA 1 cut(s) 503
XspI CTAG 4 cut(s) 504, 860, 902, 1093
ZraI GACGTC 1 cut(s) 1057
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.