Rh1AG104000

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0013479
Physical Location & Seq
Forward (+)
18143658 .. 18151371
7714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG104000.1

Sequence Viewer

Length: 897 bp
ATGAGACCGGTGTGTCCGTTCGTGAAAGCCGCTCGACCGGCGGAGCCAATCAAGAAAGAGAAAGAGTCGTCGGCGCCGTCGTCGACAGTCTCCCCAAAATGCCCCTTGGGTTACGATTCGCAGACCTTCAAGCTGGGCCCTCTGAGCTGCATGATATGCCAAGCCCTTCTCTTCGACTCTGCCAAATGCGTCCCTTGTTCTCATTCCTTCTGCAAAGTCTGTGTGTCGAGATTCAAGGACTGCCCGTTGTGTGGAGCTGACATTGAGAAGACGGAACCCAATTCCGAGCTCCAGGGTTTGGTGGATCGCTTCATTGAGGGGCATGCCAGAATCAAGAGGTCTCATAATGCAGAGGAGGAGACTAATACTAACACTAATAGTGAGAGCCATAATAAGAGGGTGATTTATGAAGACGTGTCTTTGGAGAGAGGTGCTTTCTTGGTGCAACAAGCTATGAGGGCATTCCGAGCCCAGAATATAGAAAGTGCCAAATCAAGGCTCAGTCTCTGTGCAGAAGATATCAGGGGTCAGTTGGAAACCATGGGTAACACTTCAGAGTTGTGTTCTCAGCTAGGGGCCGTTCTTGGAATGCTTGGCGACTGCTGTCGAGCAACAGGAGATGCTAGTTCTGCAGTCAATTATTTTGAAGAGAGCGTTGAATTTCTTTCAAAACTGCCAGGAAATGATCAGGAGATAACACATACACTCTCTATCTCACTCAATAAAATTGGAGACCTTAAATACTATGATGGAGACCTGCAAGCTGCAAGATCTTACTACTTCAAGTCGCTGAATGTTCGACGTGATGCTGTCAAGCATGATCCAAATGTTCCATCCCAGGTAGCAACTACTTTTTGTTTCTTCCCACTTAATTTTTTATATTTTCCATTAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000209 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006355 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010468 GO:0010556 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030163 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051341 GO:0051353 GO:0051603 GO:0051726 GO:0060255 GO:0060968 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1902551 GO:1902553 GO:1903047 GO:1903506 GO:2000112 GO:2000468 GO:2000470 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_12 TPR_7 TPR_8 zf-C3HC4_3

Protein Analysis

298

Amino Acids

32.97

Weight (kDa)

6.33

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 49 - 90 9.1e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54360 AT3G54360
fragaria_vesca FvH4_7g04620 FvH4_7g04620
malus_domestica MD07G1085200.v1.1
prunus_persica Prupe.2G051700_v2.0.a1
pyrus_communis pycom07g03790
rosa_chinensis RchiOBHm_Chr1g0330051
rosa_laevigata RLG00000029838
rosa_multiflora Rmu_sc0009365.1_g000027
rosa_roxburghii Rroxscaffold_4G00320410
rosa_rugosa Rorug01G0085400
rosa_samantha Rh1AG104000 Rh1BG082400 Rh1CG098900 Rh1DG106100
rosa_wichuraiana Rw0G013520 Rw1G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 765
AccB1I GGYRCC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 83
AciI CCGC 2 cut(s) 30, 41
AclWI GGATC 2 cut(s) 312, 815
AcsI RAATTY 1 cut(s) 659
AcuI CTGAAG 1 cut(s) 537
AcyI GRCGYC 1 cut(s) 74
AfiI CCNNNNNNNGG 3 cut(s) 251, 298, 495
AflIII ACRYGT 1 cut(s) 414
AgeI ACCGGT 1 cut(s) 7
AgsI TTSAA 6 cut(s) 130, 235, 647, 659, 669, 784
AjiI CACGTC 2 cut(s) 415, 803
AjnI CCWGG 3 cut(s) 291, 676, 837
AluBI AGCT 7 cut(s) 133, 147, 257, 289, 452, 571, 764
AluI AGCT 7 cut(s) 133, 147, 257, 289, 452, 571, 764
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 6 cut(s) 94, 345, 353, 509, 726, 747
AlwI GGATC 2 cut(s) 312, 815
AlwNI CAGNNNCTG 1 cut(s) 507
AoxI GGCC 2 cut(s) 136, 576
ApaI GGGCCC 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 147, 764
ApoI RAATTY 1 cut(s) 659
AsiGI ACCGGT 1 cut(s) 7
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 3 cut(s) 136, 137, 576
AsuHPI GGTGA 1 cut(s) 412
BaeGI GKGCMC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 3 cut(s) 140, 291, 472
BbsI GAAGAC 2 cut(s) 275, 417
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 134, 751
BccI CCATC 2 cut(s) 743, 841
BceAI ACGGC 2 cut(s) 61, 563
BciT130I CCWGG 3 cut(s) 293, 678, 839
BclI TGATCA 1 cut(s) 685
BcoDI GTCTC 6 cut(s) 94, 345, 353, 509, 726, 747
BfaI CTAG 2 cut(s) 572, 624
BfmI CTRYAG 1 cut(s) 630
BfoI RGCGCY 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 765
BglII AGATCT 1 cut(s) 770
BisI GCNGC 3 cut(s) 30, 148, 765
BlsI GCNGC 3 cut(s) 31, 149, 766
Bme1390I CCNGG 3 cut(s) 293, 678, 839
BmgBI CACGTC 2 cut(s) 415, 803
BmgT120I GGNCC 3 cut(s) 136, 137, 576
BmiI GGNNCC 5 cut(s) 45, 75, 138, 276, 577
BmrFI CCNGG 3 cut(s) 293, 678, 839
BmsI GCATC 2 cut(s) 610, 796
BoxI GACNNNNGTC 1 cut(s) 603
BpiI GAAGAC 2 cut(s) 275, 417
BpmI CTGGAG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 3 cut(s) 345, 726, 747
BsaJI CCNNGG 4 cut(s) 105, 292, 540, 837
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 298, 495
Bse118I RCCGGY 2 cut(s) 7, 37
BseBI CCWGG 3 cut(s) 293, 678, 839
BseDI CCNNGG 4 cut(s) 105, 292, 540, 837
BseGI GGATG 1 cut(s) 833
BseLI CCNNNNNNNGG 3 cut(s) 251, 298, 495
BseMII CTCAG 3 cut(s) 134, 514, 581
BseRI GAGGAG 2 cut(s) 368, 371
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 2 cut(s) 134, 751
BseYI CCCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 531
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 138, 578
BshNI GGYRCC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 8, 38
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 3 cut(s) 251, 298, 495
BsmAI GTCTC 6 cut(s) 94, 345, 353, 509, 726, 747
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 2 cut(s) 461, 594
BsnI GGCC 2 cut(s) 138, 578
Bso31I GGTCTC 3 cut(s) 345, 726, 747
Bsp120I GGGCCC 1 cut(s) 136
Bsp1286I GDGCHC 3 cut(s) 140, 291, 472
Bsp143I GATC 4 cut(s) 304, 685, 770, 820
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 2 cut(s) 30, 41
BspANI GGCC 2 cut(s) 138, 578
BspCNI CTCAG 3 cut(s) 135, 513, 580
BspLI GGNNCC 5 cut(s) 45, 75, 138, 276, 577
BspMAI CTGCAG 1 cut(s) 634
BspMI ACCTGC 1 cut(s) 765
BspPI GGATC 2 cut(s) 312, 815
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 3 cut(s) 345, 726, 747
BsrBI CCGCTC 1 cut(s) 32
BsrFI RCCGGY 2 cut(s) 7, 37
BssAI RCCGGY 2 cut(s) 7, 37
BssECI CCNNGG 4 cut(s) 105, 292, 540, 837
BssMI GATC 4 cut(s) 304, 685, 770, 820
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 2 cut(s) 105, 540
Bst2UI CCWGG 3 cut(s) 293, 678, 839
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 2 cut(s) 176, 642
BstACI GRCGYC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 324, 762
BstDEI CTNAG 3 cut(s) 143, 500, 567
BstDSI CCRYGG 1 cut(s) 540
BstF5I GGATG 1 cut(s) 833
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 4 cut(s) 307, 688, 773, 823
BstMAI GTCTC 6 cut(s) 94, 345, 353, 509, 726, 747
BstMBI GATC 4 cut(s) 304, 685, 770, 820
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 6 cut(s) 38, 144, 156, 458, 467, 629
BstNI CCWGG 3 cut(s) 293, 678, 839
BstNSI RCATGY 1 cut(s) 326
BstPAI GACNNNNGTC 1 cut(s) 603
BstSCI CCNGG 3 cut(s) 291, 676, 837
BstSFI CTRYAG 1 cut(s) 630
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 134, 751
BstV2I GAAGAC 2 cut(s) 275, 417
BstX2I RGATCY 1 cut(s) 770
BstYI RGATCY 1 cut(s) 770
BsuRI GGCC 2 cut(s) 138, 578
BtgI CCRYGG 1 cut(s) 540
BtrI CACGTC 2 cut(s) 415, 803
BtsCI GGATG 1 cut(s) 833
BveI ACCTGC 1 cut(s) 765
Cac8I GCNNGC 2 cut(s) 324, 762
CaiI CAGNNNCTG 1 cut(s) 507
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 2 cut(s) 7, 37
Cfr13I GGNCC 3 cut(s) 136, 137, 576
CseI GACGC 1 cut(s) 178
CspAI ACCGGT 1 cut(s) 7
CviAII CATG 4 cut(s) 151, 323, 541, 818
DdeI CTNAG 3 cut(s) 143, 500, 567
DinI GGCGCC 1 cut(s) 75
DpnI GATC 4 cut(s) 306, 687, 772, 822
DpnII GATC 4 cut(s) 304, 685, 770, 820
DrdI GACNNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 176, 642
EarI CTCTTC 2 cut(s) 176, 642
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 105, 540
Eco24I GRGCYC 3 cut(s) 140, 291, 472
Eco31I GGTCTC 3 cut(s) 345, 726, 747
Eco32I GATATC 1 cut(s) 520
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 3 cut(s) 291, 676, 837
EcoRV GATATC 1 cut(s) 520
EcoT14I CCWWGG 2 cut(s) 105, 540
EcoT38I GRGCYC 3 cut(s) 140, 291, 472
EgeI GGCGCC 1 cut(s) 75
EheI GGCGCC 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 105, 540
FaeI CATG 4 cut(s) 154, 326, 544, 821
FaqI GGGAC 1 cut(s) 176
FatI CATG 4 cut(s) 150, 322, 540, 817
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 30, 148, 765
FokI GGATG 1 cut(s) 820
FriOI GRGCYC 3 cut(s) 140, 291, 472
Fsp4HI GCNGC 3 cut(s) 30, 148, 765
FspBI CTAG 2 cut(s) 572, 624
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 30, 148, 765
GsaI CCCAGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 2 cut(s) 138, 578
HapII CCGG 2 cut(s) 8, 38
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 4 cut(s) 154, 326, 544, 821
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 5 cut(s) 65, 116, 176, 231, 330
HpaII CCGG 2 cut(s) 8, 38
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 4 cut(s) 144, 286, 467, 556
Hpy188III TCNNGA 5 cut(s) 22, 52, 228, 334, 689
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 4 cut(s) 73, 82, 85, 804
HpyAV CCTTC 3 cut(s) 136, 176, 217
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 2 cut(s) 414, 802
HpyCH4V TGCA 8 cut(s) 150, 213, 350, 445, 512, 632, 760, 767
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 144, 156, 458, 467, 629
HpyF3I CTNAG 3 cut(s) 143, 500, 567
HpySE526I ACGT 2 cut(s) 414, 802
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 4 cut(s) 154, 326, 544, 821
HspAI GCGC 1 cut(s) 74
KasI GGCGCC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 4 cut(s) 304, 685, 770, 820
LmnI GCTCC 3 cut(s) 43, 254, 294
Lsp1109I GCAGC 2 cut(s) 134, 751
LweI GCATC 2 cut(s) 610, 796
MaeI CTAG 2 cut(s) 572, 624
MaeII ACGT 2 cut(s) 414, 802
MaeIII GTNAC 2 cut(s) 110, 545
MalI GATC 4 cut(s) 306, 687, 772, 822
MbiI CCGCTC 1 cut(s) 32
MboI GATC 4 cut(s) 304, 685, 770, 820
MboII GAAGA 6 cut(s) 163, 280, 422, 527, 659, 853
MflI RGATCY 1 cut(s) 770
MhlI GDGCHC 3 cut(s) 140, 291, 472
MluCI AATT 5 cut(s) 280, 637, 659, 726, 871
Mly113I GGCGCC 1 cut(s) 74
MlyI GAGTC 2 cut(s) 74, 170
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 8 cut(s) 150, 310, 330, 346, 349, 390, 422, 450
MseI TTAA 2 cut(s) 738, 870
MspI CCGG 2 cut(s) 8, 38
MspR9I CCNGG 3 cut(s) 293, 678, 839
Mva1269I GAATGC 2 cut(s) 461, 594
MvaI CCWGG 3 cut(s) 293, 678, 839
MwoI GCNNNNNNNGC 6 cut(s) 38, 144, 156, 458, 467, 629
NarI GGCGCC 1 cut(s) 74
NcoI CCATGG 1 cut(s) 540
NdeII GATC 4 cut(s) 304, 685, 770, 820
NlaIII CATG 4 cut(s) 154, 326, 544, 821
NlaIV GGNNCC 5 cut(s) 45, 75, 138, 276, 577
NspI RCATGY 1 cut(s) 326
PaeI GCATGC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 77
PctI GAATGC 2 cut(s) 461, 594
PfeI GAWTC 3 cut(s) 116, 231, 330
PflMI CCANNNNNTGG 1 cut(s) 298
PinAI ACCGGT 1 cut(s) 7
PkrI GCNGC 3 cut(s) 31, 149, 766
PleI GAGTC 2 cut(s) 73, 170
PluTI GGCGCC 1 cut(s) 77
PpsI GAGTC 2 cut(s) 73, 170
PshAI GACNNNNGTC 1 cut(s) 603
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 291, 676, 837
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 3 cut(s) 291, 676, 837
PspN4I GGNNCC 5 cut(s) 45, 75, 138, 276, 577
PspOMI GGGCCC 1 cut(s) 136
PspPI GGNCC 3 cut(s) 136, 137, 576
PstI CTGCAG 1 cut(s) 634
PstNI CAGNNNCTG 1 cut(s) 507
PsuI RGATCY 1 cut(s) 770
SacI GAGCTC 1 cut(s) 291
SalI GTCGAC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 738, 870
SatI GCNGC 3 cut(s) 30, 148, 765
Sau3AI GATC 4 cut(s) 304, 685, 770, 820
Sau96I GGNCC 3 cut(s) 136, 137, 576
SchI GAGTC 2 cut(s) 74, 170
ScrFI CCNGG 3 cut(s) 293, 678, 839
SduI GDGCHC 3 cut(s) 140, 291, 472
SfaNI GCATC 2 cut(s) 610, 796
SfcI CTRYAG 1 cut(s) 630
SfoI GGCGCC 1 cut(s) 75
SphI GCATGC 1 cut(s) 326
Sse9I AATT 5 cut(s) 280, 637, 659, 726, 871
SsiI CCGC 2 cut(s) 30, 41
SspDI GGCGCC 1 cut(s) 73
SspMI CTAG 2 cut(s) 572, 624
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 291, 676, 837
StyI CCWWGG 2 cut(s) 105, 540
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 2 cut(s) 417, 805
TaqI TCGA 6 cut(s) 34, 83, 174, 227, 607, 799
TasI AATT 5 cut(s) 280, 637, 659, 726, 871
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 3 cut(s) 116, 231, 330
Tru1I TTAA 2 cut(s) 738, 870
Tru9I TTAA 2 cut(s) 738, 870
TseI GCWGC 2 cut(s) 147, 764
TspDTI ATGAA 2 cut(s) 301, 423
TspGWI ACGGA 2 cut(s) 6, 287
Van91I CCANNNNNTGG 1 cut(s) 298
XapI RAATTY 1 cut(s) 659
XceI RCATGY 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 83
XspI CTAG 2 cut(s) 572, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.