Rh1CG098900

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013479
Physical Location & Seq
Forward (+)
20899106 .. 20906659
7554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG098900.1

Sequence Viewer

Length: 900 bp
ATGAGACCGGTGTGTCCGTTCGTGAAAGCCGCTCGACCGGCGGAGCCAATCAAGAAAGAGAAAGAGTCGTCGACGGCGGCGACAGTCTCCCCAAAATGCCCCTTGGGCTACGATTCGCAGACCTTCAAGCTGGGCCCTCTGAGCTGCATGATATGCCAAGCCCTTCTCTTCGACTCTGCCAAATGCGTCCCTTGTTCTCATTCCTTCTGCAAAGTCTGTGTGTCGAGATTTAAGGACTGCCCGTTGTGTGGAGCTGACATTGAGAAGACGGAACCCAATTCCGAGCTCCAGGGTTTGGTGGATCGCTTCATTGAGGGGCATGCCAGAATCAAGAGGTCTCATAATGCAGAGGAGGAAACTAATACTAATACTAATACTAATAGTGAGAGCCATAATAAGAGAGTGATTTATGAAGACGTGTCTTTGGAGAGAGGTGCTTTCTTGGTGCAACAAGCAATGAGGGCATTCCGAGCCCAGAATATAGAAAGTGCCAAATCAAGGCTCAGTCTCTGTGCAGAAGATATCAGGGGTCAGTTGGAAACCATGGGTAACACTTCAGAGTTGTGTTCTCAGCTAGGAGCCGTTCTCGGAATGCTTGGCGACTGCTGTCGAGCAACAGGAGATTCTAGTTCTGCAGTCAATTATTTTGAAGAGAGCGTTGAATTTCTTTCAAAACTGCCAGGAAATGATCAGGAGATAACACATACACTCTCTATCTCACTCAATAAAATTGGAGACCTTAAATACTATGATGGAGACCTGCAAGCTGCAAGATCTTACTACTTCAAGTCGCTGAATGTTCGACGTGATGCTGTCAAGCATGATCCAAATGTTCCATCCCAGGTAGCAACTACTTTTTGTTTCTTCCCACTTATTTTTTTATATTTTCCATTAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000209 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006355 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010468 GO:0010556 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030163 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051341 GO:0051353 GO:0051603 GO:0051726 GO:0060255 GO:0060968 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1902551 GO:1902553 GO:1903047 GO:1903506 GO:2000112 GO:2000468 GO:2000470 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_12 TPR_7 TPR_8 zf-C3HC4_3

Protein Analysis

299

Amino Acids

33.1

Weight (kDa)

6.33

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 48 - 89 9.2e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54360 AT3G54360
fragaria_vesca FvH4_7g04620 FvH4_7g04620
malus_domestica MD07G1085200.v1.1
prunus_persica Prupe.2G051700_v2.0.a1
pyrus_communis pycom07g03790
rosa_chinensis RchiOBHm_Chr1g0330051
rosa_laevigata RLG00000029838
rosa_multiflora Rmu_sc0009365.1_g000027
rosa_roxburghii Rroxscaffold_4G00320410
rosa_rugosa Rorug01G0085400
rosa_samantha Rh1AG104000 Rh1BG082400 Rh1CG098900 Rh1DG106100
rosa_wichuraiana Rw0G013520 Rw1G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 768
AccB7I CCANNNNNTGG 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 71
AciI CCGC 3 cut(s) 30, 41, 77
AclWI GGATC 2 cut(s) 309, 818
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 1 cut(s) 540
AfiI CCNNNNNNNGG 3 cut(s) 248, 295, 498
AflIII ACRYGT 1 cut(s) 417
AgeI ACCGGT 1 cut(s) 7
AgsI TTSAA 5 cut(s) 127, 650, 662, 672, 787
AjiI CACGTC 2 cut(s) 418, 806
AjnI CCWGG 3 cut(s) 288, 679, 840
AluBI AGCT 6 cut(s) 130, 144, 254, 286, 574, 767
AluI AGCT 6 cut(s) 130, 144, 254, 286, 574, 767
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 5 cut(s) 91, 342, 512, 729, 750
AlwI GGATC 2 cut(s) 309, 818
AlwNI CAGNNNCTG 1 cut(s) 510
AoxI GGCC 1 cut(s) 133
ApaI GGGCCC 1 cut(s) 137
ApeKI GCWGC 2 cut(s) 144, 767
ApoI RAATTY 1 cut(s) 662
AsiGI ACCGGT 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 133, 134
BaeGI GKGCMC 1 cut(s) 137
BanII GRGCYC 3 cut(s) 137, 288, 475
BbsI GAAGAC 2 cut(s) 272, 420
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 131, 754
BccI CCATC 2 cut(s) 746, 844
BceAI ACGGC 2 cut(s) 90, 566
BciT130I CCWGG 3 cut(s) 290, 681, 842
BclI TGATCA 1 cut(s) 688
BcoDI GTCTC 5 cut(s) 91, 342, 512, 729, 750
BfaI CTAG 2 cut(s) 575, 627
BfmI CTRYAG 1 cut(s) 633
BfuAI ACCTGC 1 cut(s) 768
BglI GCCNNNNNGGC 1 cut(s) 105
BglII AGATCT 1 cut(s) 773
BisI GCNGC 4 cut(s) 30, 78, 145, 768
BlsI GCNGC 4 cut(s) 31, 79, 146, 769
Bme1390I CCNGG 3 cut(s) 290, 681, 842
BmgBI CACGTC 2 cut(s) 418, 806
BmgT120I GGNCC 2 cut(s) 133, 134
BmiI GGNNCC 4 cut(s) 45, 135, 273, 580
BmrFI CCNGG 3 cut(s) 290, 681, 842
BmsI GCATC 1 cut(s) 799
BoxI GACNNNNGTC 1 cut(s) 606
BpiI GAAGAC 2 cut(s) 272, 420
BplI GAGNNNNNCTC 2 cut(s) 570, 602
BpmI CTGGAG 1 cut(s) 272
BsaI GGTCTC 3 cut(s) 342, 729, 750
BsaJI CCNNGG 4 cut(s) 102, 289, 543, 840
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 295, 498
Bse118I RCCGGY 2 cut(s) 7, 37
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 3 cut(s) 290, 681, 842
BseDI CCNNGG 4 cut(s) 102, 289, 543, 840
BseGI GGATG 1 cut(s) 836
BseLI CCNNNNNNNGG 3 cut(s) 248, 295, 498
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 3 cut(s) 131, 517, 584
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 137
BseXI GCAGC 2 cut(s) 131, 754
BseYI CCCAGC 1 cut(s) 130
BsgI GTGCAG 1 cut(s) 534
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 135
BshTI ACCGGT 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 2 cut(s) 8, 38
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 248, 295, 498
BsmAI GTCTC 5 cut(s) 91, 342, 512, 729, 750
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 2 cut(s) 464, 597
BsnI GGCC 1 cut(s) 135
Bso31I GGTCTC 3 cut(s) 342, 729, 750
Bsp120I GGGCCC 1 cut(s) 133
Bsp1286I GDGCHC 3 cut(s) 137, 288, 475
Bsp143I GATC 4 cut(s) 301, 688, 773, 823
Bsp19I CCATGG 1 cut(s) 543
BspACI CCGC 3 cut(s) 30, 41, 77
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 3 cut(s) 132, 516, 583
BspLI GGNNCC 4 cut(s) 45, 135, 273, 580
BspMAI CTGCAG 1 cut(s) 637
BspMI ACCTGC 1 cut(s) 768
BspPI GGATC 2 cut(s) 309, 818
BspTNI GGTCTC 3 cut(s) 342, 729, 750
BsrBI CCGCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 2 cut(s) 7, 37
BssAI RCCGGY 2 cut(s) 7, 37
BssECI CCNNGG 4 cut(s) 102, 289, 543, 840
BssMI GATC 4 cut(s) 301, 688, 773, 823
BssT1I CCWWGG 2 cut(s) 102, 543
Bst2UI CCWGG 3 cut(s) 290, 681, 842
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 173, 645
BstAPI GCANNNNNTGC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 321, 765
BstDEI CTNAG 3 cut(s) 140, 503, 570
BstDSI CCRYGG 1 cut(s) 543
BstF5I GGATG 1 cut(s) 836
BstKTI GATC 4 cut(s) 304, 691, 776, 826
BstMAI GTCTC 5 cut(s) 91, 342, 512, 729, 750
BstMBI GATC 4 cut(s) 301, 688, 773, 823
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 6 cut(s) 38, 105, 141, 153, 461, 470
BstNI CCWGG 3 cut(s) 290, 681, 842
BstNSI RCATGY 1 cut(s) 323
BstPAI GACNNNNGTC 1 cut(s) 606
BstSCI CCNGG 3 cut(s) 288, 679, 840
BstSFI CTRYAG 1 cut(s) 633
BstSLI GKGCMC 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 131, 754
BstV2I GAAGAC 2 cut(s) 272, 420
BstX2I RGATCY 1 cut(s) 773
BstYI RGATCY 1 cut(s) 773
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 543
BtrI CACGTC 2 cut(s) 418, 806
BtsCI GGATG 1 cut(s) 836
BveI ACCTGC 1 cut(s) 768
Cac8I GCNNGC 2 cut(s) 321, 765
CaiI CAGNNNCTG 1 cut(s) 510
Cfr10I RCCGGY 2 cut(s) 7, 37
Cfr13I GGNCC 2 cut(s) 133, 134
CseI GACGC 1 cut(s) 175
CspAI ACCGGT 1 cut(s) 7
CviAII CATG 4 cut(s) 148, 320, 544, 821
DdeI CTNAG 3 cut(s) 140, 503, 570
DpnI GATC 4 cut(s) 303, 690, 775, 825
DpnII GATC 4 cut(s) 301, 688, 773, 823
DrdI GACNNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 173, 645
EarI CTCTTC 2 cut(s) 173, 645
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 102, 543
Eco24I GRGCYC 3 cut(s) 137, 288, 475
Eco31I GGTCTC 3 cut(s) 342, 729, 750
Eco32I GATATC 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 3 cut(s) 288, 679, 840
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 102, 543
EcoT38I GRGCYC 3 cut(s) 137, 288, 475
ErhI CCWWGG 2 cut(s) 102, 543
FaeI CATG 4 cut(s) 151, 323, 547, 824
FaqI GGGAC 1 cut(s) 173
FatI CATG 4 cut(s) 147, 319, 543, 820
FbaI TGATCA 1 cut(s) 688
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 4 cut(s) 30, 78, 145, 768
FokI GGATG 1 cut(s) 823
FriOI GRGCYC 3 cut(s) 137, 288, 475
Fsp4HI GCNGC 4 cut(s) 30, 78, 145, 768
FspBI CTAG 2 cut(s) 575, 627
GluI GCNGC 4 cut(s) 30, 78, 145, 768
GsaI CCCAGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 135
HapII CCGG 2 cut(s) 8, 38
HgaI GACGC 1 cut(s) 175
Hin1II CATG 4 cut(s) 151, 323, 547, 824
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 5 cut(s) 65, 113, 173, 327, 623
HpaII CCGG 2 cut(s) 8, 38
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 5 cut(s) 141, 283, 470, 559, 590
Hpy188III TCNNGA 5 cut(s) 22, 52, 225, 331, 692
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 3 cut(s) 73, 76, 807
HpyAV CCTTC 3 cut(s) 133, 173, 214
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 417, 805
HpyCH4V TGCA 8 cut(s) 147, 210, 347, 448, 515, 635, 763, 770
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 105, 141, 153, 461, 470
HpyF3I CTNAG 3 cut(s) 140, 503, 570
HpySE526I ACGT 2 cut(s) 417, 805
Hsp92II CATG 4 cut(s) 151, 323, 547, 824
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 4 cut(s) 301, 688, 773, 823
LmnI GCTCC 4 cut(s) 43, 251, 291, 578
Lsp1109I GCAGC 2 cut(s) 131, 754
LweI GCATC 1 cut(s) 799
MaeI CTAG 2 cut(s) 575, 627
MaeII ACGT 2 cut(s) 417, 805
MaeIII GTNAC 1 cut(s) 548
MalI GATC 4 cut(s) 303, 690, 775, 825
MbiI CCGCTC 1 cut(s) 32
MboI GATC 4 cut(s) 301, 688, 773, 823
MboII GAAGA 6 cut(s) 160, 277, 425, 530, 662, 856
MflI RGATCY 1 cut(s) 773
MhlI GDGCHC 3 cut(s) 137, 288, 475
MluCI AATT 4 cut(s) 277, 640, 662, 729
MlyI GAGTC 2 cut(s) 74, 167
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 7 cut(s) 147, 307, 327, 343, 346, 425, 453
MseI TTAA 2 cut(s) 231, 741
MspI CCGG 2 cut(s) 8, 38
MspR9I CCNGG 3 cut(s) 290, 681, 842
Mva1269I GAATGC 2 cut(s) 464, 597
MvaI CCWGG 3 cut(s) 290, 681, 842
MwoI GCNNNNNNNGC 6 cut(s) 38, 105, 141, 153, 461, 470
NcoI CCATGG 1 cut(s) 543
NdeII GATC 4 cut(s) 301, 688, 773, 823
NlaIII CATG 4 cut(s) 151, 323, 547, 824
NlaIV GGNNCC 4 cut(s) 45, 135, 273, 580
NspI RCATGY 1 cut(s) 323
PaeI GCATGC 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 2 cut(s) 464, 597
PfeI GAWTC 3 cut(s) 113, 327, 623
PflMI CCANNNNNTGG 1 cut(s) 295
PinAI ACCGGT 1 cut(s) 7
PkrI GCNGC 4 cut(s) 31, 79, 146, 769
PleI GAGTC 2 cut(s) 73, 167
PpsI GAGTC 2 cut(s) 73, 167
PshAI GACNNNNGTC 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 288, 679, 840
PspFI CCCAGC 1 cut(s) 130
PspGI CCWGG 3 cut(s) 288, 679, 840
PspN4I GGNNCC 4 cut(s) 45, 135, 273, 580
PspOMI GGGCCC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 133, 134
PstI CTGCAG 1 cut(s) 637
PstNI CAGNNNCTG 1 cut(s) 510
PsuI RGATCY 1 cut(s) 773
SacI GAGCTC 1 cut(s) 288
SalI GTCGAC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 231, 741
SatI GCNGC 4 cut(s) 30, 78, 145, 768
Sau3AI GATC 4 cut(s) 301, 688, 773, 823
Sau96I GGNCC 2 cut(s) 133, 134
SchI GAGTC 2 cut(s) 74, 167
ScrFI CCNGG 3 cut(s) 290, 681, 842
SduI GDGCHC 3 cut(s) 137, 288, 475
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 1 cut(s) 633
SgrDI CGTCGACG 1 cut(s) 70
SphI GCATGC 1 cut(s) 323
Sse9I AATT 4 cut(s) 277, 640, 662, 729
SsiI CCGC 3 cut(s) 30, 41, 77
SspMI CTAG 2 cut(s) 575, 627
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 288, 679, 840
StyI CCWWGG 2 cut(s) 102, 543
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 420, 808
TaqI TCGA 6 cut(s) 34, 71, 171, 224, 610, 802
TasI AATT 4 cut(s) 277, 640, 662, 729
TauI GCSGC 2 cut(s) 32, 80
TfiI GAWTC 3 cut(s) 113, 327, 623
Tru1I TTAA 2 cut(s) 231, 741
Tru9I TTAA 2 cut(s) 231, 741
TseI GCWGC 2 cut(s) 144, 767
TspDTI ATGAA 2 cut(s) 298, 426
TspGWI ACGGA 2 cut(s) 6, 284
Van91I CCANNNNNTGG 1 cut(s) 295
XapI RAATTY 1 cut(s) 662
XceI RCATGY 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 71
XspI CTAG 2 cut(s) 575, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.