Rw0G013520

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00609
OG0013479
Physical Location & Seq
Forward (+)
3310 .. 7773
4464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013520.1

Sequence Viewer

Length: 966 bp
ATGAGACCGGTATGTCCGTTCGTGAAAGCCGCTCGACCGGCGGAGCCAATCAAGAAAGAGAAAGAGCCGTCGTCGGCGGCGGCGACAGTCTCCCCAAAATGCCCCTTGGGTTACGATTCGCAGACCTTCAAGCTGGGCCCTTTGAGCTGCATGATATGCCAAGCCCTTCTCTTCGACTCTGCCAAATGCGTCCCTTGTTCTCATTCCTTCTGCAAAGTCTGTGTGTCGAGATTTAAGGACTGCCCGTTGTGTGGAGCTGACATTGAGAAGACGGAACCCAATTCCGAGCTCCAGGGTTTGGTGGATCGCTTCATTGAGGGGCATGCCAGAATCAAGAGGTCTCATAATGCAGAGGAGGAGACTAATACTAATACTAATACTAATAGTGAGAGCCATAATAAGAGAGTGATTTATGAAGACGTGTCTTTGGAGAGAGGTGCTTTCTTGGTGCAACAAGCTATGAGGGCATTCCGAGCCCAGAATATAGAAAGTGCCAAATCAAGGCTCAGTCTCTGTGCAGAAGATATCAGGGGTCAGTTGGAAACCATGGGTAACACTTCAGAGTTGTGTTCTCAGCTAGGGGCCGTTCTCGGAATGCTTGGCGACTGCTGTCGAGCAACAGGAGATGCTAGTTTCTGCAGTCAATTATTTGAAGAGAGCGTTGAATTTCTTTCAAAACTGCCAGGAAATGATCAGGGAGACCTTAACTACTATGATGGAGACCTGCAAGCTGCAAAATCTTACTACTTCAAGTCGCTGAATGTTCGACGTGATGCTGTCAAGCATGATCCAAATGTTCCATCCCAGGATCGTGCTATTTCTTTCATCCACTGTCCCCAAAAAAGAGCATCATTGCACCTCCCAGAAGTTACCAAACAGAGATGGCATCAAGTTGGAGCCTTTCAACTCAAATCAACCCATCCTAAACAGCCATCACCATTAAGACAGTGGAAACTGGACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000209 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006355 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010468 GO:0010556 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030163 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051341 GO:0051353 GO:0051603 GO:0051726 GO:0060255 GO:0060968 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1902551 GO:1902553 GO:1903047 GO:1903506 GO:2000112 GO:2000468 GO:2000470 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_12 TPR_7 TPR_8 zf-C3HC4_3

Protein Analysis

321

Amino Acids

35.72

Weight (kDa)

8.1

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 49 - 90 1e-05 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54360 AT3G54360
fragaria_vesca FvH4_7g04620 FvH4_7g04620
malus_domestica MD07G1085200.v1.1
prunus_persica Prupe.2G051700_v2.0.a1
pyrus_communis pycom07g03790
rosa_chinensis RchiOBHm_Chr1g0330051
rosa_laevigata RLG00000029838
rosa_multiflora Rmu_sc0009365.1_g000027
rosa_roxburghii Rroxscaffold_4G00320410
rosa_rugosa Rorug01G0085400
rosa_samantha Rh1AG104000 Rh1BG082400 Rh1CG098900 Rh1DG106100
rosa_wichuraiana Rw0G013520 Rw1G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 732
AccB7I CCANNNNNTGG 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 4 cut(s) 30, 41, 77, 80
AclWI GGATC 3 cut(s) 312, 782, 816
AcsI RAATTY 1 cut(s) 665
AcuI CTGAAG 1 cut(s) 543
AfiI CCNNNNNNNGG 3 cut(s) 251, 298, 501
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 7
AgsI TTSAA 6 cut(s) 130, 653, 665, 675, 751, 905
AjiI CACGTC 2 cut(s) 421, 770
AjnI CCWGG 3 cut(s) 291, 682, 804
AluBI AGCT 7 cut(s) 133, 147, 257, 289, 458, 577, 731
AluI AGCT 7 cut(s) 133, 147, 257, 289, 458, 577, 731
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 6 cut(s) 94, 345, 353, 515, 693, 714
AlwI GGATC 3 cut(s) 312, 782, 816
AlwNI CAGNNNCTG 1 cut(s) 513
AoxI GGCC 2 cut(s) 136, 582
ApaI GGGCCC 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 147, 731
ApoI RAATTY 1 cut(s) 665
AsiGI ACCGGT 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 136, 137, 582
AsuHPI GGTGA 1 cut(s) 927
BaeGI GKGCMC 1 cut(s) 140
BanII GRGCYC 3 cut(s) 140, 291, 478
BbsI GAAGAC 2 cut(s) 275, 423
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 134, 718
BccI CCATC 5 cut(s) 710, 808, 876, 927, 940
BceAI ACGGC 2 cut(s) 52, 569
BciT130I CCWGG 3 cut(s) 293, 684, 806
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 6 cut(s) 94, 345, 353, 515, 693, 714
BfaI CTAG 2 cut(s) 578, 630
BfmI CTRYAG 1 cut(s) 637
BfuAI ACCTGC 1 cut(s) 732
BisI GCNGC 5 cut(s) 30, 78, 81, 148, 732
BlsI GCNGC 5 cut(s) 31, 79, 82, 149, 733
Bme1390I CCNGG 3 cut(s) 293, 684, 806
BmgBI CACGTC 2 cut(s) 421, 770
BmgT120I GGNCC 3 cut(s) 136, 137, 582
BmiI GGNNCC 5 cut(s) 45, 138, 276, 583, 898
BmrFI CCNGG 3 cut(s) 293, 684, 806
BmsI GCATC 4 cut(s) 616, 763, 857, 895
BoxI GACNNNNGTC 1 cut(s) 609
BpiI GAAGAC 2 cut(s) 275, 423
BpmI CTGGAG 1 cut(s) 275
BsaI GGTCTC 3 cut(s) 345, 693, 714
BsaJI CCNNGG 4 cut(s) 105, 292, 546, 804
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 298, 501
Bse118I RCCGGY 2 cut(s) 7, 37
Bse1I ACTGG 1 cut(s) 960
Bse3DI GCAATG 1 cut(s) 851
BseBI CCWGG 3 cut(s) 293, 684, 806
BseDI CCNNGG 4 cut(s) 105, 292, 546, 804
BseGI GGATG 3 cut(s) 800, 825, 919
BseLI CCNNNNNNNGG 3 cut(s) 251, 298, 501
BseMI GCAATG 1 cut(s) 851
BseMII CTCAG 2 cut(s) 520, 587
BseNI ACTGG 1 cut(s) 960
BseRI GAGGAG 2 cut(s) 368, 371
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 2 cut(s) 134, 718
BseYI CCCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 537
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 138, 584
BshTI ACCGGT 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 8, 38
BslFI GGGAC 2 cut(s) 176, 819
BslI CCNNNNNNNGG 3 cut(s) 251, 298, 501
BsmAI GTCTC 6 cut(s) 94, 345, 353, 515, 693, 714
BsmFI GGGAC 2 cut(s) 176, 819
BsmI GAATGC 2 cut(s) 467, 600
BsnI GGCC 2 cut(s) 138, 584
Bso31I GGTCTC 3 cut(s) 345, 693, 714
Bsp120I GGGCCC 1 cut(s) 136
Bsp1286I GDGCHC 3 cut(s) 140, 291, 478
Bsp143I GATC 4 cut(s) 304, 691, 787, 808
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 4 cut(s) 30, 41, 77, 80
BspANI GGCC 2 cut(s) 138, 584
BspCNI CTCAG 2 cut(s) 519, 586
BspLI GGNNCC 5 cut(s) 45, 138, 276, 583, 898
BspMAI CTGCAG 1 cut(s) 641
BspMI ACCTGC 1 cut(s) 732
BspPI GGATC 3 cut(s) 312, 782, 816
BspTNI GGTCTC 3 cut(s) 345, 693, 714
BsrBI CCGCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 851
BsrFI RCCGGY 2 cut(s) 7, 37
BsrI ACTGG 1 cut(s) 960
BssAI RCCGGY 2 cut(s) 7, 37
BssECI CCNNGG 4 cut(s) 105, 292, 546, 804
BssMI GATC 4 cut(s) 304, 691, 787, 808
BssT1I CCWWGG 2 cut(s) 105, 546
Bst2UI CCWGG 3 cut(s) 293, 684, 806
Bst4CI ACNGT 4 cut(s) 88, 833, 948, 962
Bst6I CTCTTC 2 cut(s) 176, 648
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 324, 729
BstDEI CTNAG 2 cut(s) 506, 573
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 3 cut(s) 800, 825, 919
BstKTI GATC 4 cut(s) 307, 694, 790, 811
BstMAI GTCTC 6 cut(s) 94, 345, 353, 515, 693, 714
BstMBI GATC 4 cut(s) 304, 691, 787, 808
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 5 cut(s) 38, 144, 156, 464, 473
BstNI CCWGG 3 cut(s) 293, 684, 806
BstNSI RCATGY 1 cut(s) 326
BstPAI GACNNNNGTC 1 cut(s) 609
BstSCI CCNGG 3 cut(s) 291, 682, 804
BstSFI CTRYAG 1 cut(s) 637
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 134, 718
BstV2I GAAGAC 2 cut(s) 275, 423
BsuRI GGCC 2 cut(s) 138, 584
BtgI CCRYGG 1 cut(s) 546
BtrI CACGTC 2 cut(s) 421, 770
BtsCI GGATG 3 cut(s) 800, 825, 919
BtsIMutI CAGTG 2 cut(s) 829, 953
BveI ACCTGC 1 cut(s) 732
Cac8I GCNNGC 2 cut(s) 324, 729
CaiI CAGNNNCTG 1 cut(s) 513
Cfr10I RCCGGY 2 cut(s) 7, 37
Cfr13I GGNCC 3 cut(s) 136, 137, 582
CseI GACGC 1 cut(s) 178
CspAI ACCGGT 1 cut(s) 7
CviAII CATG 4 cut(s) 151, 323, 547, 785
DdeI CTNAG 2 cut(s) 506, 573
DpnI GATC 4 cut(s) 306, 693, 789, 810
DpnII GATC 4 cut(s) 304, 691, 787, 808
DrdI GACNNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 176, 648
EarI CTCTTC 2 cut(s) 176, 648
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 105, 546
Eco24I GRGCYC 3 cut(s) 140, 291, 478
Eco31I GGTCTC 3 cut(s) 345, 693, 714
Eco32I GATATC 1 cut(s) 526
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 3 cut(s) 291, 682, 804
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 105, 546
EcoT38I GRGCYC 3 cut(s) 140, 291, 478
ErhI CCWWGG 2 cut(s) 105, 546
FaeI CATG 4 cut(s) 154, 326, 550, 788
FaqI GGGAC 2 cut(s) 176, 819
FatI CATG 4 cut(s) 150, 322, 546, 784
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 5 cut(s) 30, 78, 81, 148, 732
FokI GGATG 3 cut(s) 787, 812, 906
FriOI GRGCYC 3 cut(s) 140, 291, 478
Fsp4HI GCNGC 5 cut(s) 30, 78, 81, 148, 732
FspBI CTAG 2 cut(s) 578, 630
GluI GCNGC 5 cut(s) 30, 78, 81, 148, 732
GsaI CCCAGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 2 cut(s) 138, 584
HapII CCGG 2 cut(s) 8, 38
HgaI GACGC 1 cut(s) 178
Hin1II CATG 4 cut(s) 154, 326, 550, 788
HinfI GANTC 3 cut(s) 116, 176, 330
HpaII CCGG 2 cut(s) 8, 38
HphI GGTGA 1 cut(s) 927
Hpy188I TCNGA 4 cut(s) 286, 473, 562, 593
Hpy188III TCNNGA 4 cut(s) 22, 52, 228, 334
Hpy99I CGWCG 3 cut(s) 73, 76, 771
HpyAV CCTTC 3 cut(s) 136, 176, 217
HpyCH4III ACNGT 4 cut(s) 88, 833, 948, 962
HpyCH4IV ACGT 2 cut(s) 420, 769
HpyCH4V TGCA 9 cut(s) 150, 213, 350, 451, 518, 639, 727, 734, 856
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 144, 156, 464, 473
HpyF3I CTNAG 2 cut(s) 506, 573
HpySE526I ACGT 2 cut(s) 420, 769
Hsp92II CATG 4 cut(s) 154, 326, 550, 788
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 4 cut(s) 304, 691, 787, 808
LmnI GCTCC 4 cut(s) 43, 254, 294, 896
Lsp1109I GCAGC 2 cut(s) 134, 718
LweI GCATC 4 cut(s) 616, 763, 857, 895
MaeI CTAG 2 cut(s) 578, 630
MaeII ACGT 2 cut(s) 420, 769
MaeIII GTNAC 3 cut(s) 110, 551, 868
MalI GATC 4 cut(s) 306, 693, 789, 810
MbiI CCGCTC 1 cut(s) 32
MboI GATC 4 cut(s) 304, 691, 787, 808
MboII GAAGA 5 cut(s) 163, 280, 428, 533, 665
MhlI GDGCHC 3 cut(s) 140, 291, 478
MluCI AATT 3 cut(s) 280, 644, 665
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 519, 874
MnlI CCTC 7 cut(s) 310, 330, 346, 349, 428, 456, 869
MseI TTAA 4 cut(s) 234, 705, 941, 964
MspI CCGG 2 cut(s) 8, 38
MspR9I CCNGG 3 cut(s) 293, 684, 806
Mva1269I GAATGC 2 cut(s) 467, 600
MvaI CCWGG 3 cut(s) 293, 684, 806
MwoI GCNNNNNNNGC 5 cut(s) 38, 144, 156, 464, 473
NcoI CCATGG 1 cut(s) 546
NdeII GATC 4 cut(s) 304, 691, 787, 808
NlaIII CATG 4 cut(s) 154, 326, 550, 788
NlaIV GGNNCC 5 cut(s) 45, 138, 276, 583, 898
NspI RCATGY 1 cut(s) 326
PaeI GCATGC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PctI GAATGC 2 cut(s) 467, 600
PfeI GAWTC 2 cut(s) 116, 330
PflMI CCANNNNNTGG 1 cut(s) 298
PinAI ACCGGT 1 cut(s) 7
PkrI GCNGC 5 cut(s) 31, 79, 82, 149, 733
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PshAI GACNNNNGTC 1 cut(s) 609
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 291, 682, 804
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 3 cut(s) 291, 682, 804
PspN4I GGNNCC 5 cut(s) 45, 138, 276, 583, 898
PspOMI GGGCCC 1 cut(s) 136
PspPI GGNCC 3 cut(s) 136, 137, 582
PstI CTGCAG 1 cut(s) 641
PstNI CAGNNNCTG 1 cut(s) 513
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 4 cut(s) 234, 705, 941, 964
SatI GCNGC 5 cut(s) 30, 78, 81, 148, 732
Sau3AI GATC 4 cut(s) 304, 691, 787, 808
Sau96I GGNCC 3 cut(s) 136, 137, 582
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 293, 684, 806
SduI GDGCHC 3 cut(s) 140, 291, 478
SfaNI GCATC 4 cut(s) 616, 763, 857, 895
SfcI CTRYAG 1 cut(s) 637
SphI GCATGC 1 cut(s) 326
Sse9I AATT 3 cut(s) 280, 644, 665
SsiI CCGC 4 cut(s) 30, 41, 77, 80
SspMI CTAG 2 cut(s) 578, 630
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 291, 682, 804
StyI CCWWGG 2 cut(s) 105, 546
TaaI ACNGT 4 cut(s) 88, 833, 948, 962
TaiI ACGT 2 cut(s) 423, 772
TaqI TCGA 5 cut(s) 34, 174, 227, 613, 766
TasI AATT 3 cut(s) 280, 644, 665
TauI GCSGC 3 cut(s) 32, 80, 83
TfiI GAWTC 2 cut(s) 116, 330
Tru1I TTAA 4 cut(s) 234, 705, 941, 964
Tru9I TTAA 4 cut(s) 234, 705, 941, 964
TscAI CASTG 2 cut(s) 836, 953
TseI GCWGC 2 cut(s) 147, 731
TspDTI ATGAA 3 cut(s) 301, 429, 814
TspGWI ACGGA 2 cut(s) 6, 287
TspRI CASTG 2 cut(s) 836, 953
Van91I CCANNNNNTGG 1 cut(s) 298
XapI RAATTY 1 cut(s) 665
XceI RCATGY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 945
XspI CTAG 2 cut(s) 578, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.