Rroxscaffold_4G00320410

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013479
Physical Location & Seq
Reverse (-)
49038159 .. 49045447
7289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320410.1

Sequence Viewer

Length: 1044 bp
ATGAGACCTGTGTGTCCGTTCGTGAAAGCCGCTCGACCGGCGGAGCCAATCAAGAAAGAGAAAGAGCCATCGTCGGCGGCGGCGACAGTCTCCCCAAAATGCCCCTTGGGTTACGATTCGCAGACGTTCAAGCTGGGCCCTCTGAGCTGCATGATATGCCAAGCCCTTCTCTTCGACTCTGCCAAATGCGTCCCTTGTTCTCATTCCTTCTGCAAAGTCTGTGTGTCGAGATTTAAGGACTGCCCGTTGTGTGGAGCTGACATTGAGAAGACGGAACCCAATTCCGAACTCCAGGGTTTGGTGGATCGCTTCATTGAGGGGCATGCCAGAATCAAGAGGTCTCATAATGCAGAGGAGGAGACTAATACTAATACTAATACTAATAGTGAGAGCCATAATAAGAGAGTGATTTATGAAGACGTGTCTTTGGAGAGAGGTGCTTTCTTGGTGCAACAAGCTATGAGGGCATTCCGAGCCCAGAATATAGAAAGTGCCAAATCAAGGCTCAGTCTCTGTGCAGAAGATATCAGGGGTCAGTTGGAAACCATGGGTAACACTTCAGAGTTGTGTTCTCAGCTAGGAGCCGTTCTCGGAATGCTTGGCGACTGCTGTCGAGCAACAGGAGATGCTAGTTCTGCAGTCAATTATTTTGAAGAGAGCGTTGAATTTCTTTCAAAACTGCCAGGAAATGATCAGGAGATAACACATACACTCTCTATCTCACTCAATAAAATTGGAGACCTTAAATACTATGATGGAGACCTGCAAGCTGCAAGATCTTACTACTTCAAGTCGCTGAATGTTCGACGTGATGCTGTCAAGCATGATCCAAATGTTCCATCCCAGATTCTGGATTTAGCTGTTTCATTTGCAAAAGTCGCTGATGTTGACAGAAGTCTAGGGAACGAGGATGTGGCAATTAATGAATTTCAAGAAGGAATAAAATTGTTGGAATCTTTGACATTAAAATCTGAAGACACTGGTCTTGAGCAACGGCGGCTTTCGGTGTTGGAGTTCCTTAAGAATCAAATTGTGGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000209 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006355 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010468 GO:0010556 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030163 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051341 GO:0051353 GO:0051603 GO:0051726 GO:0060255 GO:0060968 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1902551 GO:1902553 GO:1903047 GO:1903506 GO:2000112 GO:2000468 GO:2000470 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_12 TPR_7 TPR_8 zf-C3HC4_3

Protein Analysis

347

Amino Acids

38.34

Weight (kDa)

5.56

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54360 AT3G54360
fragaria_vesca FvH4_7g04620 FvH4_7g04620
malus_domestica MD07G1085200.v1.1
prunus_persica Prupe.2G051700_v2.0.a1
pyrus_communis pycom07g03790
rosa_chinensis RchiOBHm_Chr1g0330051
rosa_laevigata RLG00000029838
rosa_multiflora Rmu_sc0009365.1_g000027
rosa_roxburghii Rroxscaffold_4G00320410
rosa_rugosa Rorug01G0085400
rosa_samantha Rh1AG104000 Rh1BG082400 Rh1CG098900 Rh1DG106100
rosa_wichuraiana Rw0G013520 Rw1G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 771
AccB7I CCANNNNNTGG 2 cut(s) 298, 850
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 5 cut(s) 30, 41, 77, 80, 997
AclWI GGATC 2 cut(s) 312, 821
AcsI RAATTY 2 cut(s) 665, 926
AcuI CTGAAG 2 cut(s) 543, 993
AfiI CCNNNNNNNGG 4 cut(s) 251, 298, 501, 850
AflII CTTAAG 1 cut(s) 1019
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 6 cut(s) 130, 653, 665, 675, 790, 932
AjiI CACGTC 2 cut(s) 421, 809
AjnI CCWGG 2 cut(s) 291, 682
AluBI AGCT 7 cut(s) 133, 147, 257, 458, 577, 770, 860
AluI AGCT 7 cut(s) 133, 147, 257, 458, 577, 770, 860
Alw26I GTCTC 6 cut(s) 94, 345, 353, 515, 732, 753
AlwI GGATC 2 cut(s) 312, 821
AlwNI CAGNNNCTG 2 cut(s) 513, 850
AoxI GGCC 1 cut(s) 136
ApaI GGGCCC 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 147, 770
ApoI RAATTY 2 cut(s) 665, 926
AseI ATTAAT 1 cut(s) 921
AspS9I GGNCC 2 cut(s) 136, 137
BaeGI GKGCMC 1 cut(s) 140
BanII GRGCYC 2 cut(s) 140, 478
BbsI GAAGAC 3 cut(s) 275, 423, 981
BbvI GCAGC 2 cut(s) 134, 757
BccI CCATC 3 cut(s) 76, 749, 847
BceAI ACGGC 2 cut(s) 569, 1010
BciT130I CCWGG 2 cut(s) 293, 684
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 6 cut(s) 94, 345, 353, 515, 732, 753
BfaI CTAG 3 cut(s) 578, 630, 899
BfmI CTRYAG 1 cut(s) 636
BfrI CTTAAG 1 cut(s) 1019
BfuAI ACCTGC 1 cut(s) 771
BglII AGATCT 1 cut(s) 776
BisI GCNGC 6 cut(s) 30, 78, 81, 148, 771, 998
BlsI GCNGC 6 cut(s) 31, 79, 82, 149, 772, 999
Bme1390I CCNGG 2 cut(s) 293, 684
BmgBI CACGTC 2 cut(s) 421, 809
BmgT120I GGNCC 2 cut(s) 136, 137
BmiI GGNNCC 4 cut(s) 45, 138, 276, 583
BmrFI CCNGG 2 cut(s) 293, 684
BmsI GCATC 2 cut(s) 616, 802
BoxI GACNNNNGTC 3 cut(s) 609, 894, 981
BpiI GAAGAC 3 cut(s) 275, 423, 981
BplI GAGNNNNNCTC 2 cut(s) 573, 605
BpmI CTGGAG 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 1007
BsaI GGTCTC 3 cut(s) 345, 732, 753
BsaJI CCNNGG 3 cut(s) 105, 292, 546
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 298, 501, 850
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 985
BseBI CCWGG 2 cut(s) 293, 684
BseDI CCNNGG 3 cut(s) 105, 292, 546
BseGI GGATG 2 cut(s) 839, 916
BseLI CCNNNNNNNGG 4 cut(s) 251, 298, 501, 850
BseMII CTCAG 3 cut(s) 134, 520, 587
BseNI ACTGG 1 cut(s) 985
BseRI GAGGAG 2 cut(s) 368, 371
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 2 cut(s) 134, 757
BseYI CCCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 537
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 38
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 4 cut(s) 251, 298, 501, 850
BsmAI GTCTC 6 cut(s) 94, 345, 353, 515, 732, 753
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 2 cut(s) 467, 600
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 3 cut(s) 345, 732, 753
Bsp120I GGGCCC 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 140, 478
Bsp143I GATC 4 cut(s) 304, 691, 776, 826
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 5 cut(s) 30, 41, 77, 80, 997
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 3 cut(s) 135, 519, 586
BspLI GGNNCC 4 cut(s) 45, 138, 276, 583
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 771
BspPI GGATC 2 cut(s) 312, 821
BspTI CTTAAG 1 cut(s) 1019
BspTNI GGTCTC 3 cut(s) 345, 732, 753
BsrBI CCGCTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 985
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 3 cut(s) 105, 292, 546
BssMI GATC 4 cut(s) 304, 691, 776, 826
BssT1I CCWWGG 2 cut(s) 105, 546
Bst2UI CCWGG 2 cut(s) 293, 684
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 2 cut(s) 176, 648
BstAFI CTTAAG 1 cut(s) 1019
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 324, 768
BstDEI CTNAG 3 cut(s) 143, 506, 573
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 2 cut(s) 839, 916
BstKTI GATC 4 cut(s) 307, 694, 779, 829
BstMAI GTCTC 6 cut(s) 94, 345, 353, 515, 732, 753
BstMBI GATC 4 cut(s) 304, 691, 776, 826
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 8 cut(s) 38, 144, 156, 464, 473, 635, 878, 997
BstNI CCWGG 2 cut(s) 293, 684
BstNSI RCATGY 1 cut(s) 326
BstPAI GACNNNNGTC 3 cut(s) 609, 894, 981
BstSCI CCNGG 2 cut(s) 291, 682
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 134, 757
BstV2I GAAGAC 3 cut(s) 275, 423, 981
BstX2I RGATCY 1 cut(s) 776
BstYI RGATCY 1 cut(s) 776
BsuRI GGCC 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 546
BtrI CACGTC 2 cut(s) 421, 809
BtsCI GGATG 2 cut(s) 839, 916
BtsIMutI CAGTG 1 cut(s) 978
BveI ACCTGC 1 cut(s) 771
Cac8I GCNNGC 2 cut(s) 324, 768
CaiI CAGNNNCTG 2 cut(s) 513, 850
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 136, 137
CseI GACGC 1 cut(s) 178
CviAII CATG 4 cut(s) 151, 323, 547, 824
DdeI CTNAG 3 cut(s) 143, 506, 573
DpnI GATC 4 cut(s) 306, 693, 778, 828
DpnII GATC 4 cut(s) 304, 691, 776, 826
DrdI GACNNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 176, 648
EarI CTCTTC 2 cut(s) 176, 648
EciI GGCGGA 1 cut(s) 56
Eco130I CCWWGG 2 cut(s) 105, 546
Eco24I GRGCYC 2 cut(s) 140, 478
Eco31I GGTCTC 3 cut(s) 345, 732, 753
Eco32I GATATC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 543, 993
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 291, 682
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 105, 546
EcoT38I GRGCYC 2 cut(s) 140, 478
ErhI CCWWGG 2 cut(s) 105, 546
FaeI CATG 4 cut(s) 154, 326, 550, 827
FaqI GGGAC 1 cut(s) 176
FatI CATG 4 cut(s) 150, 322, 546, 823
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 6 cut(s) 30, 78, 81, 148, 771, 998
FokI GGATG 2 cut(s) 826, 923
FriOI GRGCYC 2 cut(s) 140, 478
Fsp4HI GCNGC 6 cut(s) 30, 78, 81, 148, 771, 998
FspBI CTAG 3 cut(s) 578, 630, 899
GluI GCNGC 6 cut(s) 30, 78, 81, 148, 771, 998
GsaI CCCAGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 178
Hin1II CATG 4 cut(s) 154, 326, 550, 827
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HinfI GANTC 6 cut(s) 116, 176, 330, 847, 953, 1024
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 889
Hpy188I TCNGA 6 cut(s) 144, 286, 473, 562, 593, 973
Hpy188III TCNNGA 8 cut(s) 22, 52, 228, 334, 695, 851, 932, 986
Hpy8I GTNNAC 1 cut(s) 889
Hpy99I CGWCG 2 cut(s) 76, 810
HpyAV CCTTC 3 cut(s) 176, 217, 929
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 3 cut(s) 125, 420, 808
HpyCH4V TGCA 9 cut(s) 150, 213, 350, 451, 518, 638, 766, 773, 872
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 144, 156, 464, 473, 635, 878, 997
HpyF3I CTNAG 3 cut(s) 143, 506, 573
HpySE526I ACGT 3 cut(s) 125, 420, 808
Hsp92II CATG 4 cut(s) 154, 326, 550, 827
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 4 cut(s) 304, 691, 776, 826
LmnI GCTCC 3 cut(s) 43, 254, 581
Lsp1109I GCAGC 2 cut(s) 134, 757
LweI GCATC 2 cut(s) 616, 802
MaeI CTAG 3 cut(s) 578, 630, 899
MaeII ACGT 3 cut(s) 125, 420, 808
MaeIII GTNAC 2 cut(s) 110, 551
MalI GATC 4 cut(s) 306, 693, 778, 828
MbiI CCGCTC 1 cut(s) 32
MboI GATC 4 cut(s) 304, 691, 776, 826
MboII GAAGA 6 cut(s) 163, 280, 428, 533, 665, 986
MflI RGATCY 1 cut(s) 776
MhlI GDGCHC 2 cut(s) 140, 478
MluCI AATT 8 cut(s) 280, 643, 665, 732, 918, 926, 944, 1029
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 3 cut(s) 519, 930, 990
MnlI CCTC 8 cut(s) 150, 310, 330, 346, 349, 428, 456, 901
MseI TTAA 5 cut(s) 234, 744, 921, 965, 1020
MspCI CTTAAG 1 cut(s) 1019
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 293, 684
Mva1269I GAATGC 2 cut(s) 467, 600
MvaI CCWGG 2 cut(s) 293, 684
MwoI GCNNNNNNNGC 8 cut(s) 38, 144, 156, 464, 473, 635, 878, 997
NcoI CCATGG 1 cut(s) 546
NdeII GATC 4 cut(s) 304, 691, 776, 826
NlaIII CATG 4 cut(s) 154, 326, 550, 827
NlaIV GGNNCC 4 cut(s) 45, 138, 276, 583
NspI RCATGY 1 cut(s) 326
PaeI GCATGC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PctI GAATGC 2 cut(s) 467, 600
PfeI GAWTC 5 cut(s) 116, 330, 847, 953, 1024
PflMI CCANNNNNTGG 2 cut(s) 298, 850
PkrI GCNGC 6 cut(s) 31, 79, 82, 149, 772, 999
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PshAI GACNNNNGTC 3 cut(s) 609, 894, 981
PshBI ATTAAT 1 cut(s) 921
Psp6I CCWGG 2 cut(s) 291, 682
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 2 cut(s) 291, 682
PspN4I GGNNCC 4 cut(s) 45, 138, 276, 583
PspOMI GGGCCC 1 cut(s) 136
PspPI GGNCC 2 cut(s) 136, 137
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 2 cut(s) 513, 850
PsuI RGATCY 1 cut(s) 776
SaqAI TTAA 5 cut(s) 234, 744, 921, 965, 1020
SatI GCNGC 6 cut(s) 30, 78, 81, 148, 771, 998
Sau3AI GATC 4 cut(s) 304, 691, 776, 826
Sau96I GGNCC 2 cut(s) 136, 137
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 293, 684
SduI GDGCHC 2 cut(s) 140, 478
SfaNI GCATC 2 cut(s) 616, 802
SfcI CTRYAG 1 cut(s) 636
SmlI CTYRAG 2 cut(s) 986, 1019
SmoI CTYRAG 2 cut(s) 986, 1019
SphI GCATGC 1 cut(s) 326
Sse9I AATT 8 cut(s) 280, 643, 665, 732, 918, 926, 944, 1029
SsiI CCGC 5 cut(s) 30, 41, 77, 80, 997
SspMI CTAG 3 cut(s) 578, 630, 899
StyD4I CCNGG 2 cut(s) 291, 682
StyI CCWWGG 2 cut(s) 105, 546
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 3 cut(s) 128, 423, 811
TaqI TCGA 5 cut(s) 34, 174, 227, 613, 805
TasI AATT 8 cut(s) 280, 643, 665, 732, 918, 926, 944, 1029
TauI GCSGC 4 cut(s) 32, 80, 83, 1000
TfiI GAWTC 5 cut(s) 116, 330, 847, 953, 1024
Tru1I TTAA 5 cut(s) 234, 744, 921, 965, 1020
Tru9I TTAA 5 cut(s) 234, 744, 921, 965, 1020
TscAI CASTG 1 cut(s) 985
TseI GCWGC 2 cut(s) 147, 770
TspDTI ATGAA 4 cut(s) 301, 429, 855, 939
TspGWI ACGGA 2 cut(s) 6, 287
TspRI CASTG 1 cut(s) 985
Van91I CCANNNNNTGG 2 cut(s) 298, 850
Vha464I CTTAAG 1 cut(s) 1019
VspI ATTAAT 1 cut(s) 921
XapI RAATTY 2 cut(s) 665, 926
XceI RCATGY 1 cut(s) 326
XspI CTAG 3 cut(s) 578, 630, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.