Rh1DG106100

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0013479
Physical Location & Seq
Forward (+)
19763857 .. 19771692
7836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG106100.1

Sequence Viewer

Length: 801 bp
ATGAGACCGGTGTGTCCGTTCGTGAAAGCCGCTCGACCGGCGGAGCCAATCAAGAAAGAGAAAGAGTCGTCGGCGCCGTCGTCGACGGCGGCGACAGTCTCCCCAAAATGCCCCTTGGGTTACGATTCGCAGACCTTCAAGCTGGGCCCTCTGAGCTGCATGATATGCCAAGCCCTTCTCTTCGACTCTGCCAAATGCGTCCCTTGTTCTCATTCCTTCTGCAAAGTCTGTGTGTCGAGATTTAAGGACTGCCCGTTGTGTGGAGCTGACATTGAGAAGACGGAACCCAATTCCGAGCTCCAGGGTTTGGTGGATCGCTTCATTGAGGGGCATGCCAGAATCAAGAGGTCTCATAATGCAGAGGAGGAAACTAATACTAATACTAATACTAATACTAATAGTGAGAGCCATAATAAGAGAGTGATTTATGAAGACGTGTCTTTGGAGAGAGGTGCTTTCTTGGTGCAACAAGCAATGAGGGCATTCCGAGCCCAGAATATAGAAAGTGCCAAATCAAGGCTCAGTCTCTGTGCAGAAGATATCAGGGGTCAGTTGGAAACCATGGGTAACACTTCAGAGTTGTGTTCTCAGCTAGGAGCTGTTCTCGGAATGCTTGGCGACTGCTGTCGAGCAACAGGAGATTCTATTTCTGCAGTCAATTATTTTGAAGAGAGCGTTGAATTTCTTTCAAAACTGCCAGGAAATGATCAGGAGGTTACTGCATTAAACCTTTATTGTGATATCAGCATTATGGCATTCTGCCCTCGATGTGCTTGCCCTGACATTGTGATTTATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000209 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006355 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010468 GO:0010556 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030163 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051341 GO:0051353 GO:0051603 GO:0051726 GO:0060255 GO:0060968 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1902551 GO:1902553 GO:1903047 GO:1903506 GO:2000112 GO:2000468 GO:2000470 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_12 TPR_7 TPR_8 zf-C3HC4_3

Protein Analysis

266

Amino Acids

29.1

Weight (kDa)

5.52

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 52 - 93 7.7e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54360 AT3G54360
fragaria_vesca FvH4_7g04620 FvH4_7g04620
malus_domestica MD07G1085200.v1.1
prunus_persica Prupe.2G051700_v2.0.a1
pyrus_communis pycom07g03790
rosa_chinensis RchiOBHm_Chr1g0330051
rosa_laevigata RLG00000029838
rosa_multiflora Rmu_sc0009365.1_g000027
rosa_roxburghii Rroxscaffold_4G00320410
rosa_rugosa Rorug01G0085400
rosa_samantha Rh1AG104000 Rh1BG082400 Rh1CG098900 Rh1DG106100
rosa_wichuraiana Rw0G013520 Rw1G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 307
AccBSI CCGCTC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 83
AciI CCGC 3 cut(s) 30, 41, 89
AclWI GGATC 1 cut(s) 321
AcsI RAATTY 1 cut(s) 680
AcuI CTGAAG 1 cut(s) 558
AcyI GRCGYC 1 cut(s) 74
AfiI CCNNNNNNNGG 3 cut(s) 260, 307, 516
AflIII ACRYGT 1 cut(s) 435
AgeI ACCGGT 1 cut(s) 7
AgsI TTSAA 4 cut(s) 139, 668, 680, 690
AjiI CACGTC 1 cut(s) 436
AjnI CCWGG 2 cut(s) 300, 697
AluBI AGCT 6 cut(s) 142, 156, 266, 298, 592, 599
AluI AGCT 6 cut(s) 142, 156, 266, 298, 592, 599
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 3 cut(s) 103, 354, 530
AlwI GGATC 1 cut(s) 321
AlwNI CAGNNNCTG 1 cut(s) 528
AoxI GGCC 1 cut(s) 145
ApaI GGGCCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 680
AsiGI ACCGGT 1 cut(s) 7
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 145, 146
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 3 cut(s) 149, 300, 493
BbsI GAAGAC 2 cut(s) 284, 438
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 143
BceAI ACGGC 2 cut(s) 61, 102
BcgI CGANNNNNNTGC 2 cut(s) 756, 790
BciT130I CCWGG 2 cut(s) 302, 699
BclI TGATCA 1 cut(s) 706
BcoDI GTCTC 3 cut(s) 103, 354, 530
BfaI CTAG 1 cut(s) 593
BfmI CTRYAG 1 cut(s) 651
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 3 cut(s) 30, 90, 157
BlsI GCNGC 3 cut(s) 31, 91, 158
Bme1390I CCNGG 2 cut(s) 302, 699
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 2 cut(s) 145, 146
BmiI GGNNCC 4 cut(s) 45, 75, 147, 285
BmrFI CCNGG 2 cut(s) 302, 699
BoxI GACNNNNGTC 1 cut(s) 624
BpiI GAAGAC 2 cut(s) 284, 438
BplI GAGNNNNNCTC 2 cut(s) 588, 620
BpmI CTGGAG 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 114, 301, 561
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 307, 516
Bse118I RCCGGY 2 cut(s) 7, 37
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 302, 699
BseDI CCNNGG 3 cut(s) 114, 301, 561
BseLI CCNNNNNNNGG 3 cut(s) 260, 307, 516
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 3 cut(s) 143, 535, 602
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 552
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 147
BshNI GGYRCC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 2 cut(s) 8, 38
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 3 cut(s) 260, 307, 516
BsmAI GTCTC 3 cut(s) 103, 354, 530
BsmFI GGGAC 1 cut(s) 185
BsmI GAATGC 3 cut(s) 482, 615, 755
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 354
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 3 cut(s) 149, 300, 493
Bsp143I GATC 2 cut(s) 313, 706
Bsp19I CCATGG 1 cut(s) 561
BspACI CCGC 3 cut(s) 30, 41, 89
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 3 cut(s) 144, 534, 601
BspLI GGNNCC 4 cut(s) 45, 75, 147, 285
BspMAI CTGCAG 1 cut(s) 655
BspPI GGATC 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 354
BsrBI CCGCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 2 cut(s) 7, 37
BssAI RCCGGY 2 cut(s) 7, 37
BssECI CCNNGG 3 cut(s) 114, 301, 561
BssMI GATC 2 cut(s) 313, 706
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 2 cut(s) 114, 561
Bst2UI CCWGG 2 cut(s) 302, 699
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 185, 663
BstACI GRCGYC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 333, 775
BstDEI CTNAG 3 cut(s) 152, 521, 588
BstDSI CCRYGG 1 cut(s) 561
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 316, 709
BstMAI GTCTC 3 cut(s) 103, 354, 530
BstMBI GATC 2 cut(s) 313, 706
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 5 cut(s) 38, 153, 165, 479, 488
BstNI CCWGG 2 cut(s) 302, 699
BstNSI RCATGY 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 624
BstSCI CCNGG 2 cut(s) 300, 697
BstSFI CTRYAG 1 cut(s) 651
BstSLI GKGCMC 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 2 cut(s) 284, 438
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 561
BtrI CACGTC 1 cut(s) 436
Cac8I GCNNGC 2 cut(s) 333, 775
CaiI CAGNNNCTG 1 cut(s) 528
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 2 cut(s) 7, 37
Cfr13I GGNCC 2 cut(s) 145, 146
CseI GACGC 1 cut(s) 187
CspAI ACCGGT 1 cut(s) 7
CviAII CATG 3 cut(s) 160, 332, 562
DdeI CTNAG 3 cut(s) 152, 521, 588
DinI GGCGCC 1 cut(s) 75
DpnI GATC 2 cut(s) 315, 708
DpnII GATC 2 cut(s) 313, 706
DrdI GACNNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 185, 663
EarI CTCTTC 2 cut(s) 185, 663
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 114, 561
Eco24I GRGCYC 3 cut(s) 149, 300, 493
Eco31I GGTCTC 1 cut(s) 354
Eco32I GATATC 2 cut(s) 541, 742
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 300, 697
EcoRV GATATC 2 cut(s) 541, 742
EcoT14I CCWWGG 2 cut(s) 114, 561
EcoT38I GRGCYC 3 cut(s) 149, 300, 493
EgeI GGCGCC 1 cut(s) 75
EheI GGCGCC 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 114, 561
FaeI CATG 3 cut(s) 163, 335, 565
FaiI YATR 9 cut(s) 161, 166, 333, 354, 411, 429, 500, 563, 752
FaqI GGGAC 1 cut(s) 185
FatI CATG 3 cut(s) 159, 331, 561
FbaI TGATCA 1 cut(s) 706
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 30, 90, 157
FriOI GRGCYC 3 cut(s) 149, 300, 493
Fsp4HI GCNGC 3 cut(s) 30, 90, 157
FspBI CTAG 1 cut(s) 593
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 30, 90, 157
GsaI CCCAGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 1 cut(s) 147
HapII CCGG 2 cut(s) 8, 38
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 3 cut(s) 163, 335, 565
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 5 cut(s) 65, 125, 185, 339, 641
HpaII CCGG 2 cut(s) 8, 38
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 5 cut(s) 153, 295, 488, 577, 608
Hpy188III TCNNGA 5 cut(s) 22, 52, 237, 343, 710
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 4 cut(s) 73, 82, 85, 88
HpyAV CCTTC 3 cut(s) 145, 185, 226
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 7 cut(s) 159, 222, 359, 466, 533, 653, 722
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 153, 165, 479, 488
HpyF3I CTNAG 3 cut(s) 152, 521, 588
HpySE526I ACGT 1 cut(s) 435
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 3 cut(s) 163, 335, 565
HspAI GCGC 1 cut(s) 74
KasI GGCGCC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 2 cut(s) 313, 706
LmnI GCTCC 4 cut(s) 43, 263, 303, 596
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 1 cut(s) 593
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 3 cut(s) 119, 566, 715
MalI GATC 2 cut(s) 315, 708
MbiI CCGCTC 1 cut(s) 32
MboI GATC 2 cut(s) 313, 706
MboII GAAGA 5 cut(s) 172, 289, 443, 548, 680
MhlI GDGCHC 3 cut(s) 149, 300, 493
MluCI AATT 3 cut(s) 289, 658, 680
Mly113I GGCGCC 1 cut(s) 74
MlyI GAGTC 2 cut(s) 74, 179
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 9 cut(s) 159, 319, 339, 355, 358, 443, 471, 706, 774
MseI TTAA 3 cut(s) 243, 725, 799
MspI CCGG 2 cut(s) 8, 38
MspR9I CCNGG 2 cut(s) 302, 699
Mva1269I GAATGC 3 cut(s) 482, 615, 755
MvaI CCWGG 2 cut(s) 302, 699
MwoI GCNNNNNNNGC 5 cut(s) 38, 153, 165, 479, 488
NarI GGCGCC 1 cut(s) 74
NcoI CCATGG 1 cut(s) 561
NdeII GATC 2 cut(s) 313, 706
NlaIII CATG 3 cut(s) 163, 335, 565
NlaIV GGNNCC 4 cut(s) 45, 75, 147, 285
NspI RCATGY 1 cut(s) 335
PaeI GCATGC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 3 cut(s) 74, 77, 89
PctI GAATGC 3 cut(s) 482, 615, 755
PfeI GAWTC 3 cut(s) 125, 339, 641
PflMI CCANNNNNTGG 1 cut(s) 307
PinAI ACCGGT 1 cut(s) 7
PkrI GCNGC 3 cut(s) 31, 91, 158
PleI GAGTC 2 cut(s) 73, 179
PluTI GGCGCC 1 cut(s) 77
PpsI GAGTC 2 cut(s) 73, 179
PshAI GACNNNNGTC 1 cut(s) 624
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 300, 697
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 2 cut(s) 300, 697
PspN4I GGNNCC 4 cut(s) 45, 75, 147, 285
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 145, 146
PstI CTGCAG 1 cut(s) 655
PstNI CAGNNNCTG 1 cut(s) 528
SacI GAGCTC 1 cut(s) 300
SalI GTCGAC 1 cut(s) 82
SaqAI TTAA 3 cut(s) 243, 725, 799
SatI GCNGC 3 cut(s) 30, 90, 157
Sau3AI GATC 2 cut(s) 313, 706
Sau96I GGNCC 2 cut(s) 145, 146
SchI GAGTC 2 cut(s) 74, 179
ScrFI CCNGG 2 cut(s) 302, 699
SduI GDGCHC 3 cut(s) 149, 300, 493
SfcI CTRYAG 1 cut(s) 651
SfoI GGCGCC 1 cut(s) 75
SgrDI CGTCGACG 1 cut(s) 82
SphI GCATGC 1 cut(s) 335
Sse9I AATT 3 cut(s) 289, 658, 680
SsiI CCGC 3 cut(s) 30, 41, 89
SspDI GGCGCC 1 cut(s) 73
SspMI CTAG 1 cut(s) 593
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 300, 697
StyI CCWWGG 2 cut(s) 114, 561
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 438
TaqI TCGA 6 cut(s) 34, 83, 183, 236, 628, 766
TasI AATT 3 cut(s) 289, 658, 680
TauI GCSGC 2 cut(s) 32, 92
TfiI GAWTC 3 cut(s) 125, 339, 641
Tru1I TTAA 3 cut(s) 243, 725, 799
Tru9I TTAA 3 cut(s) 243, 725, 799
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 2 cut(s) 310, 444
TspGWI ACGGA 2 cut(s) 6, 296
Van91I CCANNNNNTGG 1 cut(s) 307
XapI RAATTY 1 cut(s) 680
XceI RCATGY 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 83
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.