Rh1BG082400

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013479
Physical Location & Seq
Forward (+)
12956495 .. 12964581
8087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG082400.1

Sequence Viewer

Length: 789 bp
ATGAGACCGGTGTGTCCGTTCGTGAAAGCCGCTCGACCGGCGGAGCCAATCAAGAAAGAGAAAGAGCCGTCGTCGGCGGCGGCGGCGACAGTCTCCCCAAAATGCCCCTTGGGTTACGATTCGCAGACCTTCAAGCTGGGCCCTCTGAGCTGCATGATATGCCAAGCCCTTCTCTTCGACTCTGCCAAATGCGTCCCTTGTTCTCATTCCTTCTGCAAAGTCTGTGTGTCGAGATTTAAGGACTGCCCGCTGTGTGGAGCTGACATTGAGAAGACGGAACCCAATTCCGAGCTCCAGGGTTTGGTGGATCGCTTCATTGAGGGGCATGCCAGAATCAAGAGGTCTCATAATGCAGAGGAGGAGACTAATACTAATACTAATACTAATAGTGAGAGCCACAATAAGAGAGTGATTTATGAAGACGTGTCTTTGGAGAGAGGTGCTTTCTTGGTGCAACAAGCTATGAGGGCATTCCGAGCCCAGAATATAGAAAGTGCCAAATCAAGGCTCAGTCTCTGTGCAGAAGATATCAGGGGTCAGTTGGAAACCATGGGTAACACTTCAGAGTTGTGTTCTCAGCTAGGAGCCGTTCTCGGAATGCTTGGCGACTGCTGTCGAGCAACAGGAGATGCTAGTTCTGCAGTCAATTATTTTGAAGAGAGCGTTGAATTTCTTTCAAAACTGCCAGGAAATGATCAGGAGGTTATTGCATTAAACCTTTATTGTGATATCAGCATTATGACATTATGTCCTCGATGTGCTTGCCCTGAAATTGTGATTTTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000209 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006355 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010468 GO:0010556 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030163 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051341 GO:0051353 GO:0051603 GO:0051726 GO:0060255 GO:0060968 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1902551 GO:1902553 GO:1903047 GO:1903506 GO:2000112 GO:2000468 GO:2000470 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_12 TPR_7 TPR_8 zf-C3HC4_3

Protein Analysis

262

Amino Acids

28.65

Weight (kDa)

5.52

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 50 - 91 7.5e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54360 AT3G54360
fragaria_vesca FvH4_7g04620 FvH4_7g04620
malus_domestica MD07G1085200.v1.1
prunus_persica Prupe.2G051700_v2.0.a1
pyrus_communis pycom07g03790
rosa_chinensis RchiOBHm_Chr1g0330051
rosa_laevigata RLG00000029838
rosa_multiflora Rmu_sc0009365.1_g000027
rosa_roxburghii Rroxscaffold_4G00320410
rosa_rugosa Rorug01G0085400
rosa_samantha Rh1AG104000 Rh1BG082400 Rh1CG098900 Rh1DG106100
rosa_wichuraiana Rw0G013520 Rw1G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 12
AccB7I CCANNNNNTGG 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 6 cut(s) 30, 41, 77, 80, 83, 248
AclWI GGATC 1 cut(s) 315
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 546
AfiI CCNNNNNNNGG 3 cut(s) 254, 301, 504
AflIII ACRYGT 1 cut(s) 423
AgeI ACCGGT 1 cut(s) 7
AgsI TTSAA 4 cut(s) 133, 656, 668, 678
AhdI GACNNNNNGTC 1 cut(s) 747
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 2 cut(s) 294, 685
AluBI AGCT 6 cut(s) 136, 150, 260, 292, 461, 580
AluI AGCT 6 cut(s) 136, 150, 260, 292, 461, 580
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 4 cut(s) 97, 348, 356, 518
AlwI GGATC 1 cut(s) 315
AlwNI CAGNNNCTG 1 cut(s) 516
AoxI GGCC 1 cut(s) 139
ApaI GGGCCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 668
AsiGI ACCGGT 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 139, 140
BaeGI GKGCMC 1 cut(s) 143
BanII GRGCYC 3 cut(s) 143, 294, 481
BbsI GAAGAC 2 cut(s) 278, 426
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 137
BceAI ACGGC 2 cut(s) 52, 572
BcgI CGANNNNNNTGC 2 cut(s) 744, 778
BciT130I CCWGG 2 cut(s) 296, 687
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 4 cut(s) 97, 348, 356, 518
BfaI CTAG 2 cut(s) 581, 633
BfmI CTRYAG 1 cut(s) 639
BisI GCNGC 5 cut(s) 30, 78, 81, 84, 151
BlsI GCNGC 5 cut(s) 31, 79, 82, 85, 152
Bme1390I CCNGG 2 cut(s) 296, 687
BmeRI GACNNNNNGTC 1 cut(s) 747
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 2 cut(s) 139, 140
BmiI GGNNCC 4 cut(s) 45, 141, 279, 586
BmrFI CCNGG 2 cut(s) 296, 687
BmsI GCATC 1 cut(s) 619
BoxI GACNNNNGTC 1 cut(s) 612
BpiI GAAGAC 2 cut(s) 278, 426
BplI GAGNNNNNCTC 2 cut(s) 576, 608
BpmI CTGGAG 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 3 cut(s) 108, 295, 549
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 301, 504
Bse118I RCCGGY 2 cut(s) 7, 37
BseBI CCWGG 2 cut(s) 296, 687
BseDI CCNNGG 3 cut(s) 108, 295, 549
BseLI CCNNNNNNNGG 3 cut(s) 254, 301, 504
BseMII CTCAG 3 cut(s) 137, 523, 590
BseRI GAGGAG 2 cut(s) 371, 374
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 540
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 141
BshTI ACCGGT 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 2 cut(s) 8, 38
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 3 cut(s) 254, 301, 504
BsmAI GTCTC 4 cut(s) 97, 348, 356, 518
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 2 cut(s) 470, 603
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 348
Bsp120I GGGCCC 1 cut(s) 139
Bsp1286I GDGCHC 3 cut(s) 143, 294, 481
Bsp143I GATC 2 cut(s) 307, 694
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 6 cut(s) 30, 41, 77, 80, 83, 248
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 3 cut(s) 138, 522, 589
BspLI GGNNCC 4 cut(s) 45, 141, 279, 586
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 348
BsrBI CCGCTC 1 cut(s) 32
BsrFI RCCGGY 2 cut(s) 7, 37
BssAI RCCGGY 2 cut(s) 7, 37
BssECI CCNNGG 3 cut(s) 108, 295, 549
BssMI GATC 2 cut(s) 307, 694
BssT1I CCWWGG 2 cut(s) 108, 549
Bst2UI CCWGG 2 cut(s) 296, 687
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 2 cut(s) 179, 651
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 248, 327, 763
BstDEI CTNAG 3 cut(s) 146, 509, 576
BstDSI CCRYGG 1 cut(s) 549
BstKTI GATC 2 cut(s) 310, 697
BstMAI GTCTC 4 cut(s) 97, 348, 356, 518
BstMBI GATC 2 cut(s) 307, 694
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 7 cut(s) 38, 83, 147, 159, 467, 476, 638
BstNI CCWGG 2 cut(s) 296, 687
BstNSI RCATGY 1 cut(s) 329
BstPAI GACNNNNGTC 1 cut(s) 612
BstSCI CCNGG 2 cut(s) 294, 685
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 2 cut(s) 278, 426
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 549
BtrI CACGTC 1 cut(s) 424
Cac8I GCNNGC 3 cut(s) 248, 327, 763
CaiI CAGNNNCTG 1 cut(s) 516
Cfr10I RCCGGY 2 cut(s) 7, 37
Cfr13I GGNCC 2 cut(s) 139, 140
CseI GACGC 1 cut(s) 181
CspAI ACCGGT 1 cut(s) 7
CviAII CATG 3 cut(s) 154, 326, 550
DdeI CTNAG 3 cut(s) 146, 509, 576
DpnI GATC 2 cut(s) 309, 696
DpnII GATC 2 cut(s) 307, 694
DrdI GACNNNNNNGTC 1 cut(s) 12
DriI GACNNNNNGTC 1 cut(s) 747
DseDI GACNNNNNNGTC 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 179, 651
Eam1105I GACNNNNNGTC 1 cut(s) 747
EarI CTCTTC 2 cut(s) 179, 651
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 108, 549
Eco24I GRGCYC 3 cut(s) 143, 294, 481
Eco31I GGTCTC 1 cut(s) 348
Eco32I GATATC 2 cut(s) 529, 730
Eco53kI GAGCTC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 294, 685
EcoRV GATATC 2 cut(s) 529, 730
EcoT14I CCWWGG 2 cut(s) 108, 549
EcoT38I GRGCYC 3 cut(s) 143, 294, 481
ErhI CCWWGG 2 cut(s) 108, 549
FaeI CATG 3 cut(s) 157, 329, 553
FaqI GGGAC 1 cut(s) 179
FatI CATG 3 cut(s) 153, 325, 549
FauI CCCGC 1 cut(s) 255
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 5 cut(s) 30, 78, 81, 84, 151
FriOI GRGCYC 3 cut(s) 143, 294, 481
Fsp4HI GCNGC 5 cut(s) 30, 78, 81, 84, 151
FspBI CTAG 2 cut(s) 581, 633
GluI GCNGC 5 cut(s) 30, 78, 81, 84, 151
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 278
HaeIII GGCC 1 cut(s) 141
HapII CCGG 2 cut(s) 8, 38
HgaI GACGC 1 cut(s) 181
Hin1II CATG 3 cut(s) 157, 329, 553
HinfI GANTC 3 cut(s) 119, 179, 333
HpaII CCGG 2 cut(s) 8, 38
Hpy188I TCNGA 5 cut(s) 147, 289, 476, 565, 596
Hpy188III TCNNGA 5 cut(s) 22, 52, 231, 337, 698
Hpy99I CGWCG 2 cut(s) 73, 76
HpyAV CCTTC 3 cut(s) 139, 179, 220
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 7 cut(s) 153, 216, 353, 454, 521, 641, 710
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 83, 147, 159, 467, 476, 638
HpyF3I CTNAG 3 cut(s) 146, 509, 576
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 3 cut(s) 157, 329, 553
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 2 cut(s) 307, 694
LmnI GCTCC 4 cut(s) 43, 257, 297, 584
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 619
MaeI CTAG 2 cut(s) 581, 633
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 113, 554
MalI GATC 2 cut(s) 309, 696
MbiI CCGCTC 1 cut(s) 32
MboI GATC 2 cut(s) 307, 694
MboII GAAGA 5 cut(s) 166, 283, 431, 536, 668
MhlI GDGCHC 3 cut(s) 143, 294, 481
MluCI AATT 4 cut(s) 283, 646, 668, 771
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 9 cut(s) 153, 313, 333, 349, 352, 431, 459, 694, 762
MseI TTAA 3 cut(s) 237, 713, 787
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 2 cut(s) 8, 38
MspR9I CCNGG 2 cut(s) 296, 687
Mva1269I GAATGC 2 cut(s) 470, 603
MvaI CCWGG 2 cut(s) 296, 687
MwoI GCNNNNNNNGC 7 cut(s) 38, 83, 147, 159, 467, 476, 638
NcoI CCATGG 1 cut(s) 549
NdeII GATC 2 cut(s) 307, 694
NlaIII CATG 3 cut(s) 157, 329, 553
NlaIV GGNNCC 4 cut(s) 45, 141, 279, 586
NspI RCATGY 1 cut(s) 329
PaeI GCATGC 1 cut(s) 329
PctI GAATGC 2 cut(s) 470, 603
PfeI GAWTC 2 cut(s) 119, 333
PflMI CCANNNNNTGG 1 cut(s) 301
PinAI ACCGGT 1 cut(s) 7
PkrI GCNGC 5 cut(s) 31, 79, 82, 85, 152
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PshAI GACNNNNGTC 1 cut(s) 612
Psp124BI GAGCTC 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 294, 685
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 2 cut(s) 294, 685
PspN4I GGNNCC 4 cut(s) 45, 141, 279, 586
PspOMI GGGCCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 139, 140
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 516
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 3 cut(s) 237, 713, 787
SatI GCNGC 5 cut(s) 30, 78, 81, 84, 151
Sau3AI GATC 2 cut(s) 307, 694
Sau96I GGNCC 2 cut(s) 139, 140
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 296, 687
SduI GDGCHC 3 cut(s) 143, 294, 481
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 1 cut(s) 639
SphI GCATGC 1 cut(s) 329
Sse9I AATT 4 cut(s) 283, 646, 668, 771
SsiI CCGC 6 cut(s) 30, 41, 77, 80, 83, 248
SspMI CTAG 2 cut(s) 581, 633
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 294, 685
StyI CCWWGG 2 cut(s) 108, 549
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 426
TaqI TCGA 5 cut(s) 34, 177, 230, 616, 754
TasI AATT 4 cut(s) 283, 646, 668, 771
TauI GCSGC 4 cut(s) 32, 80, 83, 86
TfiI GAWTC 2 cut(s) 119, 333
Tru1I TTAA 3 cut(s) 237, 713, 787
Tru9I TTAA 3 cut(s) 237, 713, 787
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 304, 432
TspGWI ACGGA 2 cut(s) 6, 290
Van91I CCANNNNNTGG 1 cut(s) 301
XapI RAATTY 1 cut(s) 668
XceI RCATGY 1 cut(s) 329
XspI CTAG 2 cut(s) 581, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.