Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013009

Physical Location & Seq

Genomic Coordinates Forward (+)

22813754 .. 22814134

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1157000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTACGACAAGAATAAGGACGGCTTCATCAGTTTCCACGAGATTAGCCAAGCTCTAGCCCTTCTCGGGTTGGATACTGAAATCTTCGACCTCTGTTCCATGATAAAATCCTTCATCCAACCCTCAAACGACGACCTCAACTTCGACGACTTCGTTTCACTCCACCAATCCCTCTATGACACCTATTTCGACAATAACAATAACGATGAAGAGGCTTCCACTGCCGTTGCTGAGGAGTCTGATCTTTCGGAGTTGTTCAAGGTGTTTGACGAGGACGACGACGGGTACATATCGGCTAAAGAGCTTGAAATGGCAAGCTGCTTTTTTTTTTCTTTGTTGCAACTTGGTTTTGTTTTGCTACTGGAGAGATCTTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010035 GO:0010038 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0042221 GO:0043167 GO:0043169 GO:0046686 GO:0046872 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

127

Amino Acids

14.5

Weight (kDa)

4.05

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20780 AT5G44460
fragaria_vesca	FvH4_6g09300
malus_domestica	MD04G1178900.v1.1 MD07G1157000.v1.1 MD12G1194200.v1.1
prunus_persica	Prupe.6G298900_v2.0.a1
pyrus_communis	pycom04g15820 pycom12g18040
rosa_chinensis	RchiOBHm_Chr3g0459681
rosa_laevigata	RLG00000025067
rosa_multiflora	Rmu_sc0000240.1_g000021
rosa_roxburghii	Rroxscaffold_6G00420080
rosa_rugosa	Rorug03G0037400
rosa_samantha	Rh3AG096000 Rh3BG098600 Rh3CG100600 Rh3DG100000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	5, 287
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	259, 308
AluBI	AGCT	3 cut(s)	53, 304, 318
AluI	AGCT	3 cut(s)	53, 304, 318
Ama87I	CYCGRG	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	318
ArsI	GACNNNNNNTTYG	4 cut(s)	125, 157, 170, 202
AvaI	CYCGRG	1 cut(s)	65
BauI	CACGAG	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	305
BceAI	ACGGC	2 cut(s)	37, 209
BciVI	GTATCC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	67
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	241, 368
BspCNI	CTCAG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	241, 368
BssSI	CACGAG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	2 cut(s)	244, 371
BstMBI	GATC	2 cut(s)	241, 368
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuI	GTATCC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	4, 286
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	8 cut(s)	24, 48, 53, 59, 215, 296, 304, 318
CviKI_1	RGCY	8 cut(s)	24, 48, 53, 59, 215, 296, 304, 318
CviQI	GTAC	2 cut(s)	4, 286
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	243, 370
DpnII	GATC	2 cut(s)	241, 368
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	65
FaeI	CATG	1 cut(s)	103
FaiI	YATR	3 cut(s)	101, 177, 290
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	1 cut(s)	236
Hpy188I	TCNGA	2 cut(s)	241, 250
Hpy99I	CGWCG	4 cut(s)	134, 149, 281, 284
HpyAV	CCTTC	2 cut(s)	71, 121
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	241, 368
LpnPI	CCDG	1 cut(s)	347
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	56
MalI	GATC	2 cut(s)	243, 370
MboI	GATC	2 cut(s)	241, 368
MboII	GAAGA	2 cut(s)	76, 221
MflI	RGATCY	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	51, 142
MnlI	CCTC	7 cut(s)	101, 133, 146, 182, 205, 226, 265
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	2 cut(s)	241, 368
NlaIII	CATG	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 276
PkrI	GCNGC	1 cut(s)	320
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	368
RsaI	GTAC	2 cut(s)	5, 287
RsaNI	GTAC	2 cut(s)	4, 286
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	2 cut(s)	241, 368
SchI	GAGTC	1 cut(s)	245
SetI	ASST	7 cut(s)	55, 93, 138, 185, 264, 306, 320
SspMI	CTAG	1 cut(s)	56
TaqI	TCGA	3 cut(s)	87, 144, 189
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	318
TspDTI	ATGAA	3 cut(s)	16, 103, 222
TspRI	CASTG	1 cut(s)	226
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.