Prupe.6G298900_v2.0.a1

Calcium-binding protein CML42-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013009
Physical Location & Seq
Reverse (-)
27234853 .. 27235476
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G298900.1

Sequence Viewer

Length: 624 bp
ATGGAATTAGCAGCCGCGTCTTCTGCTGCACGGCCGACTGGTGCCGCCCTTAGCAAGAGGCCGTCATCGAAGTCGTCGTTTCGGCTTCGGTCCGCCAGCCTAAACTCCCTCCGCCTCCGCCGCATCTTCGACGTGTTCGACCAAAACCAAGACGGGCTCATCAGCGTCCCCGAGATCGGCCAAGCCCTCGCTCTCCTCGGCCTTGATGTCGAAATCTCCGACCTCCATTCCACTATCAAATCCTTCATCCAACCCTCCAACGACGGCCTCAACTTCGACGACTTCCTCTCCCTCCACCAGTCCCTCTCCGACACCTACTTCGCCTACGACGACGAAGAAGAGTCTGTCATTGCTTATGCGGCAGAATGCGAAGGAAAGAGGAAGATGTCCCAGGAGGAGTTGGATCTTTCGGAGGCGTTCAAGGTGTTTGACGAGGACGGAGATGGGTTCATCTCCGCCAAGGAGTTGCAGGTGGTGCTTGCCAAGCTAGGGTTCCAGGAAGGCAATGAGATTGATAGAGTTCAGCAGATGATCACCTCCGTTGACCGCAACCACGATGGCCTCGTTGACTTGTTCGAGTTCAAGGACATGATGCGCACCACTGTTCTGGTTCCCTCCTCGTAA

Protein Analysis

208

Amino Acids

22.94

Weight (kDa)

4.49

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20780 AT5G44460
fragaria_vesca FvH4_6g09300
malus_domestica MD04G1178900.v1.1 MD07G1157000.v1.1 MD12G1194200.v1.1
prunus_persica Prupe.6G298900_v2.0.a1
pyrus_communis pycom04g15820 pycom12g18040
rosa_chinensis RchiOBHm_Chr3g0459681
rosa_laevigata RLG00000025067
rosa_multiflora Rmu_sc0000240.1_g000021
rosa_roxburghii Rroxscaffold_6G00420080
rosa_rugosa Rorug03G0037400
rosa_samantha Rh3AG096000 Rh3BG098600 Rh3CG100600 Rh3DG100000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
Acc16I TGCGCA 1 cut(s) 596
Acc36I ACCTGC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 17
AciI CCGC 9 cut(s) 15, 45, 93, 112, 118, 121, 359, 456, 547
AclWI GGATC 1 cut(s) 411
AcoI YGGCCR 2 cut(s) 32, 178
AfiI CCNNNNNNNGG 2 cut(s) 176, 489
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 2 cut(s) 421, 583
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 2 cut(s) 390, 495
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 1 cut(s) 487
AluI AGCT 1 cut(s) 487
AlwI GGATC 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 6 cut(s) 32, 59, 178, 199, 265, 559
ApeKI GCWGC 2 cut(s) 11, 26
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspLEI GCGC 1 cut(s) 597
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 90
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 13, 23
BccI CCATC 2 cut(s) 437, 551
BceAI ACGGC 3 cut(s) 46, 47, 280
BciT130I CCWGG 2 cut(s) 392, 497
BclI TGATCA 1 cut(s) 531
BfaI CTAG 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 460
BisI GCNGC 6 cut(s) 12, 15, 27, 45, 121, 360
BlsI GCNGC 6 cut(s) 13, 16, 28, 46, 122, 361
Bme1390I CCNGG 2 cut(s) 392, 497
Bme18I GGWCC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 3 cut(s) 43, 494, 612
BmrFI CCNGG 2 cut(s) 392, 497
BmsI GCATC 2 cut(s) 132, 582
BpiI GAAGAC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 196, 390, 459
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 489
Bse1I ACTGG 2 cut(s) 43, 298
Bse3DI GCAATG 2 cut(s) 348, 511
BseBI CCWGG 2 cut(s) 392, 497
BseDI CCNNGG 3 cut(s) 196, 390, 459
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 176, 489
BseMI GCAATG 2 cut(s) 348, 511
BseNI ACTGG 2 cut(s) 43, 298
BseRI GAGGAG 3 cut(s) 185, 410, 607
BseX3I CGGCCG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 13, 23
BsgI GTGCAG 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 6 cut(s) 34, 61, 180, 201, 267, 561
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 170
BslFI GGGAC 3 cut(s) 152, 286, 373
BslI CCNNNNNNNGG 2 cut(s) 176, 489
BsmFI GGGAC 3 cut(s) 152, 286, 373
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 6 cut(s) 34, 61, 180, 201, 267, 561
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 174, 403, 531
BspACI CCGC 9 cut(s) 15, 45, 93, 112, 118, 121, 359, 456, 547
BspANI GGCC 6 cut(s) 34, 61, 180, 201, 267, 561
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 3 cut(s) 43, 494, 612
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 411
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 2 cut(s) 348, 511
BsrI ACTGG 2 cut(s) 43, 298
BssECI CCNNGG 3 cut(s) 196, 390, 459
BssMI GATC 3 cut(s) 174, 403, 531
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 392, 497
Bst4CI ACNGT 1 cut(s) 604
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 475
BstC8I GCNNGC 2 cut(s) 97, 480
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 597
BstKTI GATC 3 cut(s) 177, 406, 534
BstMBI GATC 3 cut(s) 174, 403, 531
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 5 cut(s) 23, 120, 359, 475, 484
BstNI CCWGG 2 cut(s) 392, 497
BstSCI CCNGG 2 cut(s) 390, 495
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 13, 23
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 403
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 1 cut(s) 403
BstZI CGGCCG 1 cut(s) 32
BsuRI GGCC 6 cut(s) 34, 61, 180, 201, 267, 561
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 600
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 2 cut(s) 97, 480
CfoI GCGC 1 cut(s) 597
Cfr13I GGNCC 1 cut(s) 90
CpoI CGGWCCG 1 cut(s) 90
CseI GACGC 2 cut(s) 6, 154
CspI CGGWCCG 1 cut(s) 90
CviAII CATG 1 cut(s) 589
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 176, 405, 533
DpnII GATC 3 cut(s) 174, 403, 531
EaeI YGGCCR 2 cut(s) 32, 178
EagI CGGCCG 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 4 cut(s) 82, 101, 107, 445
EclXI CGGCCG 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 90
Eco52I CGGCCG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 390, 495
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 1 cut(s) 592
FaiI YATR 2 cut(s) 357, 590
FaqI GGGAC 3 cut(s) 152, 286, 373
FatI CATG 1 cut(s) 588
FbaI TGATCA 1 cut(s) 531
Fnu4HI GCNGC 6 cut(s) 12, 15, 27, 45, 121, 360
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 6 cut(s) 12, 15, 27, 45, 121, 360
FspAI RTGCGCAY 1 cut(s) 596
FspBI CTAG 1 cut(s) 488
FspI TGCGCA 1 cut(s) 596
GlaI GCGC 1 cut(s) 596
GluI GCNGC 6 cut(s) 12, 15, 27, 45, 121, 360
HaeIII GGCC 6 cut(s) 34, 61, 180, 201, 267, 561
HgaI GACGC 2 cut(s) 6, 154
HhaI GCGC 1 cut(s) 597
Hin1II CATG 1 cut(s) 592
Hin6I GCGC 1 cut(s) 595
HinP1I GCGC 1 cut(s) 595
HincII GTYRAC 2 cut(s) 544, 568
HindII GTYRAC 2 cut(s) 544, 568
HinfI GANTC 1 cut(s) 341
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 2 cut(s) 544, 568
Hpy188I TCNGA 3 cut(s) 220, 310, 412
Hpy8I GTNNAC 2 cut(s) 544, 568
Hpy99I CGWCG 6 cut(s) 79, 134, 266, 281, 332, 335
HpyAV CCTTC 3 cut(s) 253, 365, 494
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 29, 469
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 120, 359, 475, 484
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 592
HspAI GCGC 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 3 cut(s) 174, 403, 531
LpnPI CCDG 9 cut(s) 24, 109, 311, 377, 404, 455, 482, 509, 593
Lsp1109I GCAGC 2 cut(s) 13, 23
LweI GCATC 2 cut(s) 132, 582
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 132
MalI GATC 3 cut(s) 176, 405, 533
MboI GATC 3 cut(s) 174, 403, 531
MboII GAAGA 5 cut(s) 12, 118, 347, 350, 394
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 5 cut(s) 243, 274, 282, 333, 381
MspR9I CCNGG 2 cut(s) 392, 497
Mva1269I GAATGC 1 cut(s) 371
MvaI CCWGG 2 cut(s) 392, 497
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 5 cut(s) 23, 120, 359, 475, 484
NdeII GATC 3 cut(s) 174, 403, 531
NlaIII CATG 1 cut(s) 592
NlaIV GGNNCC 3 cut(s) 43, 494, 612
NmeAIII GCCGAG 1 cut(s) 177
NsbI TGCGCA 1 cut(s) 596
PaqCI CACCTGC 1 cut(s) 460
PcsI WCGNNNNNNNCGW 5 cut(s) 74, 135, 216, 327, 561
PctI GAATGC 1 cut(s) 371
PfoI TCCNGGA 1 cut(s) 495
PkrI GCNGC 6 cut(s) 13, 16, 28, 46, 122, 361
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 390, 495
PspGI CCWGG 2 cut(s) 390, 495
PspN4I GGNNCC 3 cut(s) 43, 494, 612
PspPI GGNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 403
Rsr2I CGGWCCG 1 cut(s) 90
RsrII CGGWCCG 1 cut(s) 90
SatI GCNGC 6 cut(s) 12, 15, 27, 45, 121, 360
Sau3AI GATC 3 cut(s) 174, 403, 531
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 392, 497
SduI GDGCHC 1 cut(s) 159
SetI ASST 7 cut(s) 135, 225, 317, 426, 474, 489, 539
SfaNI GCATC 2 cut(s) 132, 582
SinI GGWCC 1 cut(s) 90
Sse9I AATT 1 cut(s) 5
SsiI CCGC 9 cut(s) 15, 45, 93, 112, 118, 121, 359, 456, 547
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 2 cut(s) 390, 495
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 604
TaiI ACGT 1 cut(s) 135
TaqI TCGA 6 cut(s) 68, 129, 138, 210, 276, 576
TaqII GACCGA 1 cut(s) 78
TasI AATT 1 cut(s) 5
TauI GCSGC 4 cut(s) 17, 47, 123, 362
TscAI CASTG 1 cut(s) 607
TseI GCWGC 2 cut(s) 11, 26
TspDTI ATGAA 2 cut(s) 235, 439
TspGWI ACGGA 2 cut(s) 453, 529
TspRI CASTG 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 90
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.