Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

OG0013009

Physical Location & Seq

Genomic Coordinates Forward (+)

114152 .. 114790

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000240.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggaagcagcagcaccttcttcagccggaaccagtgaacgcacccttacccgaaggccctcagtctcttcctcctttcgcctccgcagcccgagtcttaattctctccgcctcctccgcatctttgatgttttcgacaagaaccgcgacggcatggtcagcgtcgaagagatcagccaggccctaggactcctcggcctggacgtcgaagtttccgagctggagcgcaccatccggaccttcatccagcccggaaacgaaggcctcaagttcgaggatttcgtagggctccaccagtccctttacgatacattcttcttcgacggtgatgacattggaaatgctgtggaagaggcggcggccgcggtggtggcagcgcgggatgaggaggaggcaaagaagttgcaggaagaatcggatctaagggaggcgttcaaggtgtttgatgaagatggagatgggtacatatcggcaaaggagctgcagacggtgcttgggaagctagggtttccggaagggaatgagattgatagagtggagaagatgattacttccgttgaccggaaccacgacggcctcgttgacttgttcgaatttaagcacatgatgcgcagtacccttcttgttccttcctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010035 GO:0010038 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0042221 GO:0043167 GO:0043169 GO:0046686 GO:0046872 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

212

Amino Acids

23.59

Weight (kDa)

4.57

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20780 AT5G44460
fragaria_vesca	FvH4_6g09300
malus_domestica	MD04G1178900.v1.1 MD07G1157000.v1.1 MD12G1194200.v1.1
prunus_persica	Prupe.6G298900_v2.0.a1
pyrus_communis	pycom04g15820 pycom12g18040
rosa_chinensis	RchiOBHm_Chr3g0459681
rosa_laevigata	RLG00000025067
rosa_multiflora	Rmu_sc0000240.1_g000021
rosa_roxburghii	Rroxscaffold_6G00420080
rosa_rugosa	Rorug03G0037400
rosa_samantha	Rh3AG096000 Rh3BG098600 Rh3CG100600 Rh3DG100000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AatII	GACGTC	1 cut(s)	207
Acc16I	TGCGCA	1 cut(s)	611
AccII	CGCG	3 cut(s)	147, 365, 379
AccIII	TCCGGA	2 cut(s)	234, 511
AciI	CCGC	9 cut(s)	85, 109, 118, 145, 356, 359, 363, 365, 379
AclWI	GGATC	1 cut(s)	426
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	593
AcuI	CTGAAG	1 cut(s)	6
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	2 cut(s)	464, 616
AfiI	CCNNNNNNNGG	2 cut(s)	199, 561
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	177, 198
AluBI	AGCT	3 cut(s)	220, 481, 502
AluI	AGCT	3 cut(s)	220, 481, 502
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	426
Ama87I	CYCGRG	1 cut(s)	91
Aor13HI	TCCGGA	2 cut(s)	234, 511
AoxI	GGCC	6 cut(s)	56, 180, 196, 262, 360, 574
ApeKI	GCWGC	5 cut(s)	8, 11, 87, 374, 481
ApoI	RAATTY	1 cut(s)	593
AspA2I	CCTAGG	1 cut(s)	184
AspLEI	GCGC	3 cut(s)	228, 379, 612
AspS9I	GGNCC	3 cut(s)	57, 181, 237
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	338
AsuII	TTCGAA	1 cut(s)	591
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	237
AvrII	CCTAGG	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	291
BbvI	GCAGC	5 cut(s)	20, 23, 99, 386, 468
BccI	CCATC	3 cut(s)	239, 446, 452
BceAI	ACGGC	2 cut(s)	166, 589
BciT130I	CCWGG	2 cut(s)	179, 200
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	185, 503
BfmI	CTRYAG	1 cut(s)	482
BisI	GCNGC	8 cut(s)	9, 12, 88, 357, 360, 363, 375, 482
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	8 cut(s)	10, 13, 89, 358, 361, 364, 376, 483
Bme1390I	CCNGG	3 cut(s)	179, 200, 252
Bme18I	GGWCC	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	57, 181, 237
BmiI	GGNNCC	3 cut(s)	31, 290, 566
BmrFI	CCNGG	3 cut(s)	179, 200, 252
BmsI	GCATC	2 cut(s)	129, 597
BpmI	CTGGAG	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	184, 193, 363
BsaWI	WCCGGW	3 cut(s)	234, 511, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 561
Bse1I	ACTGG	2 cut(s)	33, 295
BseAI	TCCGGA	2 cut(s)	234, 511
BseBI	CCWGG	2 cut(s)	179, 200
BseDI	CCNNGG	3 cut(s)	184, 193, 363
BseGI	GGATG	3 cut(s)	231, 243, 388
BseLI	CCNNNNNNNGG	2 cut(s)	199, 561
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	33, 295
BseRI	GAGGAG	4 cut(s)	104, 182, 401, 404
BseX3I	CGGCCG	1 cut(s)	360
BseXI	GCAGC	5 cut(s)	20, 23, 99, 386, 468
Bsh1236I	CGCG	3 cut(s)	147, 365, 379
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	6 cut(s)	58, 182, 198, 264, 362, 576
BsiEI	CGRYCG	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	5 cut(s)	27, 235, 252, 512, 562
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	199, 561
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	6 cut(s)	58, 182, 198, 264, 362, 576
BsoBI	CYCGRG	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	591
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp13I	TCCGGA	2 cut(s)	234, 511
Bsp143I	GATC	2 cut(s)	171, 418
BspACI	CCGC	9 cut(s)	85, 109, 118, 145, 356, 359, 363, 365, 379
BspANI	GGCC	6 cut(s)	58, 182, 198, 264, 362, 576
BspCNI	CTCAG	1 cut(s)	74
BspEI	TCCGGA	2 cut(s)	234, 511
BspFNI	CGCG	3 cut(s)	147, 365, 379
BspLI	GGNNCC	3 cut(s)	31, 290, 566
BspMAI	CTGCAG	1 cut(s)	486
BspPI	GGATC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	33, 295
BssECI	CCNNGG	3 cut(s)	184, 193, 363
BssMI	GATC	2 cut(s)	171, 418
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	2 cut(s)	179, 200
Bst4CI	ACNGT	2 cut(s)	326, 490
Bst6I	CTCTTC	3 cut(s)	73, 162, 345
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	2 cut(s)	490, 607
BstBI	TTCGAA	1 cut(s)	591
BstDEI	CTNAG	2 cut(s)	61, 422
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	231, 243, 388
BstFNI	CGCG	3 cut(s)	147, 365, 379
BstHHI	GCGC	3 cut(s)	228, 379, 612
BstKTI	GATC	2 cut(s)	174, 421
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	171, 418
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 117, 159, 362, 371, 490, 499, 607
BstNI	CCWGG	2 cut(s)	179, 200
BstSCI	CCNGG	3 cut(s)	177, 198, 250
BstSFI	CTRYAG	1 cut(s)	482
BstUI	CGCG	3 cut(s)	147, 365, 379
BstV1I	GCAGC	5 cut(s)	20, 23, 99, 386, 468
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BstZI	CGGCCG	1 cut(s)	360
BsuRI	GGCC	6 cut(s)	58, 182, 198, 264, 362, 576
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	3 cut(s)	231, 243, 388
BtsIMutI	CAGTG	1 cut(s)	40
CciNI	GCGGCCGC	1 cut(s)	360
CfoI	GCGC	3 cut(s)	228, 379, 612
Cfr13I	GGNCC	3 cut(s)	57, 181, 237
Cfr42I	CCGCGG	1 cut(s)	366
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	463, 615
CviAII	CATG	2 cut(s)	154, 604
CviQI	GTAC	2 cut(s)	463, 615
DdeI	CTNAG	2 cut(s)	61, 422
DpnI	GATC	2 cut(s)	173, 420
DpnII	GATC	2 cut(s)	171, 418
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	360
EagI	CGGCCG	1 cut(s)	360
Eam1104I	CTCTTC	3 cut(s)	73, 162, 345
EarI	CTCTTC	3 cut(s)	73, 162, 345
EciI	GGCGGA	1 cut(s)	98
EclXI	CGGCCG	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	184
Eco147I	AGGCCT	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	237
Eco52I	CGGCCG	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	57, 181
EcoRII	CCWGG	2 cut(s)	177, 198
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	2 cut(s)	157, 607
FaiI	YATR	3 cut(s)	155, 467, 605
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	2 cut(s)	153, 603
FauI	CCCGC	1 cut(s)	372
Fnu4HI	GCNGC	8 cut(s)	9, 12, 88, 357, 360, 363, 375, 482
FokI	GGATG	3 cut(s)	218, 230, 395
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	8 cut(s)	9, 12, 88, 357, 360, 363, 375, 482
FspBI	CTAG	2 cut(s)	185, 503
FspI	TGCGCA	1 cut(s)	611
GlaI	GCGC	3 cut(s)	227, 378, 611
GluI	GCNGC	8 cut(s)	9, 12, 88, 357, 360, 363, 375, 482
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	6 cut(s)	58, 182, 198, 264, 362, 576
HapII	CCGG	5 cut(s)	27, 235, 252, 512, 562
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	3 cut(s)	228, 379, 612
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	157, 607
Hin6I	GCGC	3 cut(s)	226, 377, 610
HinP1I	GCGC	3 cut(s)	226, 377, 610
HincII	GTYRAC	2 cut(s)	559, 583
HindII	GTYRAC	2 cut(s)	559, 583
HinfI	GANTC	3 cut(s)	94, 189, 413
HpaII	CCGG	5 cut(s)	27, 235, 252, 512, 562
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	3 cut(s)	38, 559, 583
Hpy188I	TCNGA	2 cut(s)	217, 418
Hpy188III	TCNNGA	3 cut(s)	235, 512, 636
Hpy8I	GTNNAC	3 cut(s)	38, 559, 583
Hpy99I	CGWCG	5 cut(s)	152, 167, 209, 326, 575
HpyAV	CCTTC	7 cut(s)	27, 48, 250, 254, 509, 629, 639
HpyCH4III	ACNGT	2 cut(s)	326, 490
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	406, 484
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 117, 159, 362, 371, 490, 499, 607
HpyF3I	CTNAG	2 cut(s)	61, 422
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	157, 607
HspAI	GCGC	3 cut(s)	226, 377, 610
Kpn2I	TCCGGA	2 cut(s)	234, 511
KspI	CCGCGG	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	171, 418
LmnI	GCTCC	3 cut(s)	223, 294, 478
Lsp1109I	GCAGC	5 cut(s)	20, 23, 99, 386, 468
LweI	GCATC	2 cut(s)	129, 597
MaeI	CTAG	2 cut(s)	185, 503
MaeII	ACGT	1 cut(s)	204
MalI	GATC	2 cut(s)	173, 420
MboI	GATC	2 cut(s)	171, 418
MboII	GAAGA	9 cut(s)	12, 60, 179, 307, 310, 362, 422, 461, 553
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	2 cut(s)	100, 593
MlyI	GAGTC	2 cut(s)	103, 183
MroI	TCCGGA	2 cut(s)	234, 511
MseI	TTAA	2 cut(s)	99, 597
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	5 cut(s)	27, 235, 252, 512, 562
MspR9I	CCNGG	3 cut(s)	179, 200, 252
MvaI	CCWGG	2 cut(s)	179, 200
MvnI	CGCG	3 cut(s)	147, 365, 379
MwoI	GCNNNNNNNGC	8 cut(s)	87, 117, 159, 362, 371, 490, 499, 607
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	171, 418
NlaIII	CATG	2 cut(s)	157, 607
NlaIV	GGNNCC	3 cut(s)	31, 290, 566
NmeAIII	GCCGAG	1 cut(s)	174
NotI	GCGGCCGC	1 cut(s)	360
NsbI	TGCGCA	1 cut(s)	611
NspV	TTCGAA	1 cut(s)	591
PceI	AGGCCT	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	4 cut(s)	201, 213, 279, 576
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	8 cut(s)	10, 13, 89, 358, 361, 364, 376, 483
PleI	GAGTC	2 cut(s)	102, 183
PpsI	GAGTC	2 cut(s)	102, 183
Psp6I	CCWGG	2 cut(s)	177, 198
PspGI	CCWGG	2 cut(s)	177, 198
PspN4I	GGNNCC	3 cut(s)	31, 290, 566
PspPI	GGNCC	3 cut(s)	57, 181, 237
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	2 cut(s)	464, 616
RsaNI	GTAC	2 cut(s)	463, 615
SacII	CCGCGG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	99, 597
SatI	GCNGC	8 cut(s)	9, 12, 88, 357, 360, 363, 375, 482
Sau3AI	GATC	2 cut(s)	171, 418
Sau96I	GGNCC	3 cut(s)	57, 181, 237
SchI	GAGTC	2 cut(s)	103, 183
ScrFI	CCNGG	3 cut(s)	179, 200, 252
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	7 cut(s)	19, 207, 222, 242, 441, 483, 504
SfaNI	GCATC	2 cut(s)	129, 597
SfcI	CTRYAG	1 cut(s)	482
Sfr303I	CCGCGG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	591
SgrBI	CCGCGG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	100, 593
SseBI	AGGCCT	1 cut(s)	264
SsiI	CCGC	9 cut(s)	85, 109, 118, 145, 356, 359, 363, 365, 379
SspMI	CTAG	2 cut(s)	185, 503
StuI	AGGCCT	1 cut(s)	264
StyD4I	CCNGG	3 cut(s)	177, 198, 250
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	326, 490
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	6 cut(s)	135, 165, 207, 273, 321, 591
TasI	AATT	2 cut(s)	100, 593
TauI	GCSGC	3 cut(s)	359, 362, 365
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	99, 597
Tru9I	TTAA	2 cut(s)	99, 597
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	5 cut(s)	8, 11, 87, 374, 481
TspDTI	ATGAA	2 cut(s)	232, 462
TspGWI	ACGGA	1 cut(s)	544
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	1 cut(s)	593
XmaJI	CCTAGG	1 cut(s)	184
XspI	CTAG	2 cut(s)	185, 503
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.