Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016945

Physical Location & Seq

Genomic Coordinates Forward (+)

27286974 .. 27287713

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1192700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGTACCTTGGAAGTATTCTTGGAGCCATAGTCATATTTGTTGGGCTATATCTGGTTCTATGGGGGAAGAAGAAAGATAAACCTCCATCTCATTCATTAAAAAGTCAGAATCAAGCACTAGATGATGAAGAGATGACTACAAATCAGCAACAAATGGGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

55

Amino Acids

6.02

Weight (kDa)

6.52

Isoelectric Point (pI)

27.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016945)

Species	Orthologous Gene IDs
malus_domestica	MD07G1192700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0143491
rosa_multiflora	Rmu_sc0005795.1_g000010
rosa_roxburghii	Rroxscaffold_4G00326350
rosa_samantha	Rh1AG171600 Rh2CG177900 Rh4CG356500 Rh5BG541500 Rh5CG564100 Rh6DG130700 Rh7AG226100 Rh7CG240400 Rh7CG519100 Rh7DG235000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	5
BccI	CCATC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
BseDI	CCNNGG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	2 cut(s)	26, 46
CviKI_1	RGCY	2 cut(s)	26, 46
CviQI	GTAC	1 cut(s)	4
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaiI	YATR	5 cut(s)	29, 35, 49, 61, 163
FspBI	CTAG	1 cut(s)	119
HinfI	GANTC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	1 cut(s)	38
MaeI	CTAG	1 cut(s)	119
MboII	GAAGA	3 cut(s)	79, 82, 140
MnlI	CCTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	25
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	98
SetI	ASST	2 cut(s)	9, 85
SgeI	CNNG	5 cut(s)	20, 32, 65, 125, 131
SspMI	CTAG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	84, 141
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.