Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0016945

Physical Location & Seq

Genomic Coordinates Forward (+)

22435041 .. 22441366

Gene Structure 6326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG240400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCGCCTCTTCTCGAGTCTGTTCCGGTTGGTCTTCGGTGGCTTTGTCAAGCCTCTCCAGGCTCTCGCCCAGTTTCTCGGTCCCCGCGGATCTTCCCCATTGGCATCATCACTGCCTATCGAGAATGAAGACGACAACGGCGAGTCTAGCAGGCCGGCGTCACGCACCACTCCCCCACTCAGGCGGCCGTCTGATAATTTAGGTGACGGCTACCAGTGGATCCGCTGCAGAAAAATACGCTTCGAGTTCGAGATCATGCAAATTCATCTGAATTGGAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006810 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009914 GO:0009987 GO:0010033 GO:0010286 GO:0010817 GO:0023052 GO:0030054 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

94

Amino Acids

10.77

Weight (kDa)

10.22

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016945)

Species	Orthologous Gene IDs
malus_domestica	MD07G1192700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0143491
rosa_multiflora	Rmu_sc0005795.1_g000010
rosa_roxburghii	Rroxscaffold_4G00326350
rosa_samantha	Rh1AG171600 Rh2CG177900 Rh4CG356500 Rh5BG541500 Rh5CG564100 Rh6DG130700 Rh7AG226100 Rh7CG240400 Rh7CG519100 Rh7DG235000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	85, 87, 184, 223
AclWI	GGATC	3 cut(s)	97, 214, 227
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	57
AlwI	GGATC	3 cut(s)	97, 214, 227
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	2 cut(s)	152, 185
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	80
BamHI	GGATCC	1 cut(s)	219
BbsI	GAAGAC	2 cut(s)	25, 135
BbvI	GCAGC	1 cut(s)	212
BceAI	ACGGC	3 cut(s)	154, 172, 223
BciT130I	CCWGG	1 cut(s)	59
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	2 cut(s)	185, 226
BlsI	GCNGC	2 cut(s)	186, 227
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	82, 221
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	113
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	2 cut(s)	25, 135
BpmI	CTGGAG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	70, 214
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	2 cut(s)	70, 214
BseX3I	CGGCCG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	154, 187
BsiEI	CGRYCG	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	25, 155
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	154, 187
BsoBI	CYCGRG	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	89, 219, 252
BspACI	CCGC	4 cut(s)	85, 87, 184, 223
BspANI	GGCC	2 cut(s)	154, 187
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	82, 221
BspMAI	CTGCAG	1 cut(s)	230
BspPI	GGATC	3 cut(s)	97, 214, 227
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	70, 214
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	89, 219, 252
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	152, 156
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	92, 222, 255
BstMBI	GATC	3 cut(s)	89, 219, 252
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	2 cut(s)	25, 135
BstX2I	RGATCY	2 cut(s)	89, 219
BstYI	RGATCY	2 cut(s)	89, 219
BstZI	CGGCCG	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	154, 187
BtgI	CCRYGG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	2 cut(s)	110, 221
Cac8I	GCNNGC	2 cut(s)	152, 156
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	80
Cfr42I	CCGCGG	1 cut(s)	88
CseI	GACGC	1 cut(s)	147
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	6 cut(s)	42, 52, 62, 154, 187, 210
CviKI_1	RGCY	6 cut(s)	42, 52, 62, 154, 187, 210
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	3 cut(s)	91, 221, 254
DpnII	GATC	3 cut(s)	89, 219, 252
EaeI	YGGCCR	1 cut(s)	185
EagI	CGGCCG	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EclXI	CGGCCG	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	80
Eco52I	CGGCCG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	57
FaeI	CATG	1 cut(s)	259
FaiI	YATR	1 cut(s)	257
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	185, 226
Fsp4HI	GCNGC	2 cut(s)	185, 226
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	185, 226
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	154, 187
HapII	CCGG	2 cut(s)	25, 155
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	16, 143
HpaII	CCGG	2 cut(s)	25, 155
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	193, 270
Hpy188III	TCNNGA	3 cut(s)	13, 121, 250
HpyCH4V	TGCA	2 cut(s)	228, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	179
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	89, 219, 252
LpnPI	CCDG	8 cut(s)	38, 44, 71, 83, 136, 166, 168, 227
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	159, 203
MalI	GATC	3 cut(s)	91, 221, 254
MboI	GATC	3 cut(s)	89, 219, 252
MboII	GAAGA	3 cut(s)	25, 84, 140
MflI	RGATCY	2 cut(s)	89, 219
MluCI	AATT	3 cut(s)	196, 261, 271
MlyI	GAGTC	2 cut(s)	25, 152
MnlI	CCTC	2 cut(s)	17, 63
MroNI	GCCGGC	1 cut(s)	154
MspA1I	CMGCKG	2 cut(s)	87, 225
MspI	CCGG	2 cut(s)	25, 155
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	147
NaeI	GCCGGC	1 cut(s)	156
NdeII	GATC	3 cut(s)	89, 219, 252
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	2 cut(s)	82, 221
NmuCI	GTSAC	2 cut(s)	159, 203
PaeR7I	CTCGAG	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	186, 227
PleI	GAGTC	2 cut(s)	24, 151
PpsI	GAGTC	2 cut(s)	24, 151
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	82, 221
PspPI	GGNCC	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	89, 219
SacII	CCGCGG	1 cut(s)	88
SatI	GCNGC	2 cut(s)	185, 226
Sau3AI	GATC	3 cut(s)	89, 219, 252
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	25, 152
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	1 cut(s)	205
SfaNI	GCATC	1 cut(s)	113
SfcI	CTRYAG	1 cut(s)	226
Sfr274I	CTCGAG	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	3 cut(s)	196, 261, 271
SsiI	CCGC	4 cut(s)	85, 87, 184, 223
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	57
TaqI	TCGA	4 cut(s)	14, 120, 243, 249
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	3 cut(s)	196, 261, 271
TauI	GCSGC	1 cut(s)	187
TscAI	CASTG	2 cut(s)	117, 221
TseFI	GTSAC	2 cut(s)	159, 203
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	2 cut(s)	159, 203
TspDTI	ATGAA	2 cut(s)	141, 254
TspRI	CASTG	2 cut(s)	117, 221
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	261
XhoI	CTCGAG	1 cut(s)	13
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.