Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0016945

Physical Location & Seq

Genomic Coordinates Reverse (-)

16318377 .. 16319321

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG177900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCGTCGATTTCTAGTGGTCAAATTTTATCTACTCTTAGTGGTCATTCGAAGAAGGTTACCAGCGTTAAATTTGGAGGTCGCTATAATCTGGTCATAACCAAGTTGGCTGACAAGACGTTTTGCATGTCATTCAGTATGGTTATTGGGATGGCCATTAATAATTCTGCATACTCTATGATAGAGAGCTTAACATGGGGTTTTTGTTTAAAACATGGATCAACTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022607 GO:0022613 GO:0022618 GO:0030312 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0034622 GO:0034641 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0065003 GO:0070013 GO:0070534 GO:0070647 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080008 GO:0090304 GO:0098542 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04120 map03040 map04120

Pfam Domains

Protein Families

Prp19 U-box WD40

Protein Analysis

77

Amino Acids

8.33

Weight (kDa)

9.83

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016945)

Species	Orthologous Gene IDs
malus_domestica	MD07G1192700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0143491
rosa_multiflora	Rmu_sc0005795.1_g000010
rosa_roxburghii	Rroxscaffold_4G00326350
rosa_samantha	Rh1AG171600 Rh2CG177900 Rh4CG356500 Rh5BG541500 Rh5CG564100 Rh6DG130700 Rh7AG226100 Rh7CG240400 Rh7CG519100 Rh7DG235000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	24, 71
AcyI	GRCGYC	1 cut(s)	5
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	24, 71
AseI	ATTAAT	1 cut(s)	159
AsuII	TTCGAA	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	155
BccI	CCATC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	15, 225
Bpu14I	TTCGAA	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	5
BseGI	GGATG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	226
BspT104I	TTCGAA	1 cut(s)	50
BssMI	GATC	1 cut(s)	218
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	130
BstPI	GGTNACC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	156
CviAII	CATG	3 cut(s)	127, 195, 215
CviJI	RGCY	3 cut(s)	110, 155, 189
CviKI_1	RGCY	3 cut(s)	110, 155, 189
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
DraI	TTTAAA	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	58
FaeI	CATG	3 cut(s)	130, 198, 218
FaiI	YATR	8 cut(s)	87, 98, 128, 140, 172, 179, 196, 216
FatI	CATG	3 cut(s)	126, 194, 214
FokI	GGATG	1 cut(s)	163
FspBI	CTAG	2 cut(s)	15, 225
HaeIII	GGCC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	130, 198, 218
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	126, 170
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	130, 198, 218
Kzo9I	GATC	1 cut(s)	218
LpnPI	CCDG	2 cut(s)	76, 77
MaeI	CTAG	2 cut(s)	15, 225
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	3 cut(s)	24, 71, 163
MluNI	TGGCCA	1 cut(s)	155
MnlI	CCTC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	5 cut(s)	69, 159, 191, 209, 232
Msp20I	TGGCCA	1 cut(s)	155
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	130, 198, 218
NspI	RCATGY	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	50
PshBI	ATTAAT	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	58
SaqAI	TTAA	5 cut(s)	69, 159, 191, 209, 232
Sau3AI	GATC	1 cut(s)	218
SetI	ASST	4 cut(s)	60, 82, 122, 191
SfuI	TTCGAA	1 cut(s)	50
SgeI	CNNG	8 cut(s)	27, 75, 104, 115, 127, 139, 207, 227
Sse9I	AATT	3 cut(s)	24, 71, 163
SspMI	CTAG	2 cut(s)	15, 225
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	8, 50
TasI	AATT	3 cut(s)	24, 71, 163
Tru1I	TTAA	5 cut(s)	69, 159, 191, 209, 232
Tru9I	TTAA	5 cut(s)	69, 159, 191, 209, 232
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	2 cut(s)	24, 71
XceI	RCATGY	1 cut(s)	130
XspI	CTAG	2 cut(s)	15, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.