Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016945

Physical Location & Seq

Genomic Coordinates Forward (+)

23347619 .. 23358591

Gene Structure 10973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG235000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCGCCTATTCTCGAGTCTGTTCCAGTTGGTCTTCGGCGGCTTTGTCAAGCCTCTCCAGGCTCTCGCCCAGTTTCTCGATCCCCGCGGATCTTTCTCATTGGCATCATCACTGCCTATCGGGAACAAAGACGACAACGGCGAGTCTAGCAGGCCGGCGTCACGCACCACTCCCCCACTCAGGGTTTCGATTTCAATATCTGGTCAAATTTTATCTACTCTTAGTGGTCATTCGAAGAAGGTTACCAGCGTTAAATTTGGAGGTCGCTATAATCTGGTCATAACCAGGTTGGCCGACAAGACGTTTTGCATACAGTTCATATGGCAAGGCTCTGATGATGGGAACGACAACTGTAACCACACTTTGAAAGATCATGCAACTGAGTATGGTAGAGAAGTATGTGGGGACTTCTCCTTCATGGATTTTCTTGAGGCTTTTACATGTAATGTCGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022607 GO:0022613 GO:0022618 GO:0030312 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0034622 GO:0034641 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0065003 GO:0070013 GO:0070534 GO:0070647 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080008 GO:0090304 GO:0098542 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04120 map03040 map04120

Pfam Domains

Protein Families

Prp19 U-box WD40

Protein Analysis

152

Amino Acids

16.76

Weight (kDa)

7.69

Isoelectric Point (pI)

19.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	67 - 128	1.1e-06	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016945)

Species	Orthologous Gene IDs
malus_domestica	MD07G1192700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0143491
rosa_multiflora	Rmu_sc0005795.1_g000010
rosa_roxburghii	Rroxscaffold_4G00326350
rosa_samantha	Rh1AG171600 Rh2CG177900 Rh4CG356500 Rh5BG541500 Rh5CG564100 Rh6DG130700 Rh7AG226100 Rh7CG240400 Rh7CG519100 Rh7DG235000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	87
AciI	CCGC	3 cut(s)	39, 85, 87
AclWI	GGATC	2 cut(s)	74, 97
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	207, 254
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	180, 181
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	2 cut(s)	195, 367
AjnI	CCWGG	2 cut(s)	57, 284
AlwI	GGATC	2 cut(s)	74, 97
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	2 cut(s)	152, 291
ApoI	RAATTY	2 cut(s)	207, 254
AspLEI	GCGC	1 cut(s)	6
AsuII	TTCGAA	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	25
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	2 cut(s)	59, 286
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	2 cut(s)	59, 286
BmeT110I	CYCGRG	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	59, 286
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	113
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 181
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	25, 70
BseBI	CCWGG	2 cut(s)	59, 286
BseDI	CCNNGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	180, 181
BseMII	CTCAG	2 cut(s)	193, 372
BseNI	ACTGG	2 cut(s)	25, 70
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	154, 293
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	180, 181
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	154, 293
BsoBI	CYCGRG	1 cut(s)	13
Bsp119I	TTCGAA	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	79, 89, 370
BspACI	CCGC	3 cut(s)	39, 85, 87
BspANI	GGCC	2 cut(s)	154, 293
BspCNI	CTCAG	2 cut(s)	192, 373
BspFNI	CGCG	1 cut(s)	87
BspPI	GGATC	2 cut(s)	74, 97
BspT104I	TTCGAA	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	25, 70
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	79, 89, 370
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	59, 286
Bst4CI	ACNGT	2 cut(s)	315, 353
BstACI	GRCGYC	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	152, 156
BstDEI	CTNAG	3 cut(s)	179, 221, 381
BstDSI	CCRYGG	1 cut(s)	85
BstEII	GGTNACC	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	82, 92, 373
BstMBI	GATC	3 cut(s)	79, 89, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNI	CCWGG	2 cut(s)	59, 286
BstNSI	RCATGY	1 cut(s)	444
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	2 cut(s)	57, 284
BstUI	CGCG	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	154, 293
BtgI	CCRYGG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	152, 156
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	154
Cfr42I	CCGCGG	1 cut(s)	88
CseI	GACGC	1 cut(s)	147
CsiI	ACCWGGT	1 cut(s)	284
CviAII	CATG	3 cut(s)	374, 418, 441
CviJI	RGCY	7 cut(s)	42, 52, 62, 154, 293, 330, 434
CviKI_1	RGCY	7 cut(s)	42, 52, 62, 154, 293, 330, 434
DdeI	CTNAG	3 cut(s)	179, 221, 381
DpnI	GATC	3 cut(s)	81, 91, 372
DpnII	GATC	3 cut(s)	79, 89, 370
EaeI	YGGCCR	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	13
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	57, 284
FaeI	CATG	3 cut(s)	377, 421, 444
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	373, 417, 440
FauI	CCCGC	1 cut(s)	92
FauNDI	CATATG	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	154, 293
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	377, 421, 444
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	16, 143
HpaII	CCGG	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	4 cut(s)	13, 77, 121, 428
HpyAV	CCTTC	2 cut(s)	232, 424
HpyCH4III	ACNGT	2 cut(s)	315, 353
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	2 cut(s)	309, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	3 cut(s)	179, 221, 381
HpySE526I	ACGT	1 cut(s)	302
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	377, 421, 444
HspAI	GCGC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	79, 89, 370
LweI	GCATC	1 cut(s)	113
MabI	ACCWGGT	1 cut(s)	284
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	159, 241, 353
MalI	GATC	3 cut(s)	81, 91, 372
MboI	GATC	3 cut(s)	79, 89, 370
MboII	GAAGA	2 cut(s)	25, 247
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	2 cut(s)	207, 254
MlyI	GAGTC	2 cut(s)	25, 152
MnlI	CCTC	3 cut(s)	63, 254, 424
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	59, 286
MvaI	CCWGG	2 cut(s)	59, 286
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	147
NaeI	GCCGGC	1 cut(s)	156
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	3 cut(s)	79, 89, 370
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	377, 421, 444
NmuCI	GTSAC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	444
NspV	TTCGAA	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	13
PciI	ACATGT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	2 cut(s)	24, 151
PpsI	GAGTC	2 cut(s)	24, 151
PscI	ACATGT	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	57, 284
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	57, 284
PsuI	RGATCY	1 cut(s)	89
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	3 cut(s)	79, 89, 370
SchI	GAGTC	2 cut(s)	25, 152
ScrFI	CCNGG	2 cut(s)	59, 286
SetI	ASST	4 cut(s)	243, 265, 290, 305
SexAI	ACCWGGT	1 cut(s)	284
SfaNI	GCATC	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	233
SgrBI	CCGCGG	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	13
SmlI	CTYRAG	2 cut(s)	13, 428
SmoI	CTYRAG	2 cut(s)	13, 428
Sse9I	AATT	2 cut(s)	207, 254
SsiI	CCGC	3 cut(s)	39, 85, 87
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	57, 284
TaaI	ACNGT	2 cut(s)	315, 353
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	5 cut(s)	14, 78, 188, 233, 450
TasI	AATT	2 cut(s)	207, 254
TauI	GCSGC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	2 cut(s)	307, 406
TspRI	CASTG	1 cut(s)	117
XapI	RAATTY	2 cut(s)	207, 254
XceI	RCATGY	1 cut(s)	444
XhoI	CTCGAG	1 cut(s)	13
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.