Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016945

Physical Location & Seq

Genomic Coordinates Reverse (-)

79562424 .. 79562672

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG564100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCGCCTCTTCTCGAGTATGTTCCGATTGGTCTTCGGCGGCTTTGTCAAGCCTCTCCAGGCTCTCGCCCAGTTTCTCGGTCCCCGCGGATCTTCCTCATTGGCATCATCACTGCCTATCGGGAACGAAGACGACAACGGCGAGTCTAGCAGGCCGGCATCACGCACCACTCCCCCACTCAGGTGCTCAAGAATTTCAATGAGGTTCGATTCCTCCGAATCGAGCTTCCCTCCGGCGAGTTGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

82

Amino Acids

8.88

Weight (kDa)

10.52

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016945)

Species	Orthologous Gene IDs
malus_domestica	MD07G1192700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0143491
rosa_multiflora	Rmu_sc0005795.1_g000010
rosa_roxburghii	Rroxscaffold_4G00326350
rosa_samantha	Rh1AG171600 Rh2CG177900 Rh4CG356500 Rh5BG541500 Rh5CG564100 Rh6DG130700 Rh7AG226100 Rh7CG240400 Rh7CG519100 Rh7DG235000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	87
AciI	CCGC	3 cut(s)	39, 85, 87
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	57
AleI	CACNNNNGTG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw21I	GWGCWC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	80
BbsI	GAAGAC	2 cut(s)	25, 135
Bbv12I	GWGCWC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	59
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	113, 167
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	2 cut(s)	25, 135
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	155, 233
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	3 cut(s)	39, 85, 87
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	152, 156
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 242
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	87
BstV2I	GAAGAC	2 cut(s)	25, 135
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	152, 156
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	80
Cfr42I	CCGCGG	1 cut(s)	88
CviJI	RGCY	5 cut(s)	42, 52, 62, 154, 225
CviKI_1	RGCY	5 cut(s)	42, 52, 62, 154, 225
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	57
FaiI	YATR	2 cut(s)	20, 247
FaqI	GGGAC	1 cut(s)	66
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	2 cut(s)	155, 233
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	3 cut(s)	143, 209, 218
HpaII	CCGG	2 cut(s)	155, 233
Hpy188I	TCNGA	2 cut(s)	26, 217
Hpy188III	TCNNGA	3 cut(s)	13, 121, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 242
HpyF3I	CTNAG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	89
LpnPI	CCDG	6 cut(s)	44, 71, 83, 136, 166, 168
LweI	GCATC	2 cut(s)	113, 167
MaeI	CTAG	1 cut(s)	147
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	3 cut(s)	25, 84, 140
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	6 cut(s)	17, 63, 106, 195, 223, 240
MroNI	GCCGGC	1 cut(s)	154
MslI	CAYNNNNRTG	1 cut(s)	181
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	2 cut(s)	155, 233
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	147, 242
NaeI	GCCGGC	1 cut(s)	156
NdeII	GATC	1 cut(s)	89
NgoMIV	GCCGGC	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 213
PdiI	GCCGGC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	209, 218
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	181
SacII	CCGCGG	1 cut(s)	88
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	3 cut(s)	185, 206, 227
SfaNI	GCATC	2 cut(s)	113, 167
Sfr274I	CTCGAG	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	13, 187
SmoI	CTYRAG	2 cut(s)	13, 187
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	3 cut(s)	39, 85, 87
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	57
TaqI	TCGA	3 cut(s)	14, 207, 221
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	192
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	209, 218
TscAI	CASTG	1 cut(s)	117
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	13
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.