Rh5BG541500

F-box protein At5g46170-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0016945
Physical Location & Seq
Reverse (-)
85855645 .. 85855826
182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG541500.1

Sequence Viewer

Length: 182 bp
ATGCGCCTCTTCTCGAGTATGTTCCGATTGGTCTTCGGCGGCTTTGTCAAGCCTCTCCAGGCTCTCGCCCAGTTTCTCGGTCCCCGCGGATCTTCCTCATTGGCATCATCACTGCCTATCGGGAACGAAGACGACAACGGCGAGTCTAGCAGGCCGGCATCACGCACCACTCCCCCACTCAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

60

Amino Acids

6.4

Weight (kDa)

10.61

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AciI CCGC 3 cut(s) 39, 85, 87
AclWI GGATC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 57
AlwI GGATC 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 1 cut(s) 80
BbsI GAAGAC 2 cut(s) 25, 135
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 59
BfaI CTAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 2 cut(s) 113, 167
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 2 cut(s) 25, 135
BpmI CTGGAG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 85
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 13
Bsp143I GATC 1 cut(s) 89
BspACI CCGC 3 cut(s) 39, 85, 87
BspANI GGCC 1 cut(s) 154
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 152, 156
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 92
BstMBI GATC 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstUI CGCG 1 cut(s) 87
BstV2I GAAGAC 2 cut(s) 25, 135
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 152, 156
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 80
Cfr42I CCGCGG 1 cut(s) 88
CviJI RGCY 4 cut(s) 42, 52, 62, 154
CviKI_1 RGCY 4 cut(s) 42, 52, 62, 154
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 57
FaiI YATR 1 cut(s) 20
FaqI GGGAC 1 cut(s) 66
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 154
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 2 cut(s) 13, 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 179
HspAI GCGC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 89
LpnPI CCDG 5 cut(s) 44, 71, 83, 136, 168
LweI GCATC 2 cut(s) 113, 167
MaeI CTAG 1 cut(s) 147
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 3 cut(s) 25, 84, 140
MflI RGATCY 1 cut(s) 89
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 3 cut(s) 17, 63, 106
MroNI GCCGGC 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 147
NaeI GCCGGC 1 cut(s) 156
NdeII GATC 1 cut(s) 89
NgoMIV GCCGGC 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 82
PaeR7I CTCGAG 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 80
PsuI RGATCY 1 cut(s) 89
SacII CCGCGG 1 cut(s) 88
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 89
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 59
SfaNI GCATC 2 cut(s) 113, 167
Sfr274I CTCGAG 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 1 cut(s) 80
SlaI CTCGAG 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SsiI CCGC 3 cut(s) 39, 85, 87
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 57
TaqI TCGA 1 cut(s) 14
TaqII GACCGA 1 cut(s) 68
TauI GCSGC 1 cut(s) 42
TscAI CASTG 1 cut(s) 117
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 13
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.