Rh1AG171600

F-box protein At5g46170-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016945
Physical Location & Seq
Reverse (-)
32948010 .. 32948258
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG171600.1

Sequence Viewer

Length: 249 bp
ATGCGCCTCTTCTCGAGTCTGTTCTGGTTGGTCTTCGGCGGCTTTGTCAAGCCTCTCCAGGCTCTCACCCAGTTTCTCGGTCCCCGCGGATCTTCCTCATTGGCATCATCACTGCCTATCGGGAACAAAGACGACAGCGGCGAGTCTAGCAGGCCTGCGTCACCCACCACTCCTCCACTCAGGTGCTCAAGAATTTCAATGAGGTTCGATTCCTCCGGATCGAGCTTCCCTCCGGCGAGCTGGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

82

Amino Acids

8.77

Weight (kDa)

10.75

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 4 cut(s) 39, 85, 87, 138
AclWI GGATC 2 cut(s) 97, 226
AcsI RAATTY 1 cut(s) 192
AgsI TTSAA 1 cut(s) 198
AjnI CCWGG 1 cut(s) 57
AleI CACNNNNGTG 1 cut(s) 181
AluBI AGCT 2 cut(s) 225, 240
AluI AGCT 2 cut(s) 225, 240
Alw21I GWGCWC 1 cut(s) 188
AlwI GGATC 2 cut(s) 97, 226
Ama87I CYCGRG 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 192
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 58, 153
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 59
BfaI CTAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 40, 139
BlsI GCNGC 2 cut(s) 41, 140
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 214, 246
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bse1I ACTGG 1 cut(s) 70
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 2 cut(s) 216, 233
BslFI GGGAC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 2 cut(s) 89, 218
BspACI CCGC 4 cut(s) 39, 85, 87, 138
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 2 cut(s) 97, 226
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 2 cut(s) 89, 218
Bst2UI CCWGG 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 3 cut(s) 152, 156, 238
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 92, 221
BstMBI GATC 2 cut(s) 89, 218
BstMWI GCNNNNNNNGC 2 cut(s) 147, 242
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstUI CGCG 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 3 cut(s) 152, 156, 238
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 80
Cfr42I CCGCGG 1 cut(s) 88
CseI GACGC 1 cut(s) 147
CviJI RGCY 6 cut(s) 42, 52, 62, 154, 225, 240
CviKI_1 RGCY 6 cut(s) 42, 52, 62, 154, 225, 240
DdeI CTNAG 1 cut(s) 179
DpnI GATC 2 cut(s) 91, 220
DpnII GATC 2 cut(s) 89, 218
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 57
FaqI GGGAC 1 cut(s) 66
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 40, 139
Fsp4HI GCNGC 2 cut(s) 40, 139
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 40, 139
GsaI CCCAGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 154
HapII CCGG 2 cut(s) 216, 233
HgaI GACGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 3 cut(s) 16, 143, 209
HpaII CCGG 2 cut(s) 216, 233
HphI GGTGA 2 cut(s) 58, 153
Hpy188III TCNNGA 4 cut(s) 13, 121, 189, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 242
HpyF3I CTNAG 1 cut(s) 179
HspAI GCGC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 215
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 2 cut(s) 89, 218
LpnPI CCDG 9 cut(s) 10, 44, 71, 83, 136, 166, 168, 226, 229
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 159
MalI GATC 2 cut(s) 91, 220
MboI GATC 2 cut(s) 89, 218
MboII GAAGA 2 cut(s) 25, 84
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 1 cut(s) 192
MlyI GAGTC 2 cut(s) 25, 152
MnlI CCTC 7 cut(s) 17, 63, 106, 183, 195, 223, 240
MroI TCCGGA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 181
MspA1I CMGCKG 2 cut(s) 87, 138
MspI CCGG 2 cut(s) 216, 233
MspR9I CCNGG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 147, 242
NdeII GATC 2 cut(s) 89, 218
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 159
OliI CACNNNNGTG 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 13
PceI AGGCCT 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 2 cut(s) 41, 140
PleI GAGTC 2 cut(s) 24, 151
PpsI GAGTC 2 cut(s) 24, 151
Psp6I CCWGG 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 80
PsuI RGATCY 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 181
SacII CCGCGG 1 cut(s) 88
SatI GCNGC 2 cut(s) 40, 139
Sau3AI GATC 2 cut(s) 89, 218
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 2 cut(s) 25, 152
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 188
SetI ASST 4 cut(s) 185, 206, 227, 242
SfaNI GCATC 1 cut(s) 113
Sfr274I CTCGAG 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 1 cut(s) 80
SlaI CTCGAG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 181
SmlI CTYRAG 2 cut(s) 13, 187
SmoI CTYRAG 2 cut(s) 13, 187
Sse9I AATT 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 4 cut(s) 39, 85, 87, 138
SspMI CTAG 1 cut(s) 147
StuI AGGCCT 1 cut(s) 154
StyD4I CCNGG 1 cut(s) 57
TaqI TCGA 3 cut(s) 14, 207, 221
TaqII GACCGA 1 cut(s) 68
TasI AATT 1 cut(s) 192
TauI GCSGC 2 cut(s) 42, 141
TfiI GAWTC 1 cut(s) 209
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 159
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 1 cut(s) 192
XhoI CTCGAG 1 cut(s) 13
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.