Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005795.1

Orthogroup ID

OG0016945

Physical Location & Seq

Genomic Coordinates Forward (+)

53249 .. 54446

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005795.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggttgcaatcctgggttcctttgttttagcagaacaattgtaccttgggagtgttatcggagctgctgtaatcatcattggtctgtatctcattctctggggaaaagcaaaggaccagtctcctccatcacatctgttccggttggtcttcggcggctttgtcaagcctctccaggctctcgcccagtttctcggtccccgcggatcttcctcattggcatcatcactgcctatagggaacgaagacgacaatggcgagtctagcaggccggcgtcacacacaactcccccactcaggtgctcaagaatttcaatgtggttcgattcctccggatcgagcttcccttcggcgagctgggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

121

Amino Acids

12.81

Weight (kDa)

7.94

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016945)

Species	Orthologous Gene IDs
malus_domestica	MD07G1192700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0143491
rosa_multiflora	Rmu_sc0005795.1_g000010
rosa_roxburghii	Rroxscaffold_4G00326350
rosa_samantha	Rh1AG171600 Rh2CG177900 Rh4CG356500 Rh5BG541500 Rh5CG564100 Rh6DG130700 Rh7AG226100 Rh7CG240400 Rh7CG519100 Rh7DG235000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	332
AciI	CCGC	3 cut(s)	156, 202, 204
AclWI	GGATC	2 cut(s)	214, 343
AcsI	RAATTY	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	315
AjnI	CCWGG	2 cut(s)	12, 174
AleI	CACNNNNGTG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	65, 342, 357
AluI	AGCT	3 cut(s)	65, 342, 357
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	214, 343
Aor13HI	TCCGGA	1 cut(s)	332
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	309
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspS9I	GGNCC	2 cut(s)	115, 197
AvaII	GGWCC	2 cut(s)	115, 197
BaeI	ACNNNNGTAYC	2 cut(s)	26, 59
BbsI	GAAGAC	2 cut(s)	142, 252
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	14, 176
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	66, 157
BlsI	GCNGC	2 cut(s)	67, 158
Bme1390I	CCNGG	2 cut(s)	14, 176
Bme18I	GGWCC	2 cut(s)	115, 197
BmgT120I	GGNCC	2 cut(s)	115, 197
BmiI	GGNNCC	2 cut(s)	19, 199
BmrFI	CCNGG	2 cut(s)	14, 176
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	181
BpiI	GAAGAC	2 cut(s)	142, 252
BpmI	CTGGAG	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	289
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	3 cut(s)	13, 46, 202
BsaWI	WCCGGW	2 cut(s)	141, 332
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	118, 187
BseAI	TCCGGA	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	14, 176
BseDI	CCNNGG	3 cut(s)	13, 46, 202
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	310
BseNI	ACTGG	2 cut(s)	118, 187
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	142, 272, 333
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp13I	TCCGGA	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	206, 335
BspACI	CCGC	3 cut(s)	156, 202, 204
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	332
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	19, 199
BspPI	GGATC	2 cut(s)	214, 343
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	2 cut(s)	118, 187
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	3 cut(s)	13, 46, 202
BssMI	GATC	2 cut(s)	206, 335
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	14, 176
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	269, 273, 355
BstDEI	CTNAG	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	2 cut(s)	209, 338
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	206, 335
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 359
BstNI	CCWGG	2 cut(s)	14, 176
BstSCI	CCNGG	2 cut(s)	12, 174
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	2 cut(s)	142, 252
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	269, 273, 355
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	115, 197
Cfr42I	CCGCGG	1 cut(s)	205
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	43
CviJI	RGCY	7 cut(s)	65, 159, 169, 179, 271, 342, 357
CviKI_1	RGCY	7 cut(s)	65, 159, 169, 179, 271, 342, 357
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	208, 337
DpnII	GATC	2 cut(s)	206, 335
Eco130I	CCWWGG	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	115, 197
EcoRII	CCWGG	2 cut(s)	12, 174
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaiI	YATR	2 cut(s)	236, 364
FaqI	GGGAC	1 cut(s)	183
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	2 cut(s)	66, 157
Fsp4HI	GCNGC	2 cut(s)	66, 157
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	2 cut(s)	66, 157
GsaI	CCCAGC	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	3 cut(s)	142, 272, 333
HgaI	GACGC	1 cut(s)	264
Hin1I	GRCGYC	1 cut(s)	275
HinfI	GANTC	2 cut(s)	260, 326
HpaII	CCGG	3 cut(s)	142, 272, 333
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	2 cut(s)	306, 333
HpyAV	CCTTC	1 cut(s)	357
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 359
HpyF3I	CTNAG	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	275
Kpn2I	TCCGGA	1 cut(s)	332
KroI	GCCGGC	1 cut(s)	271
KroNI	GCCGGC	1 cut(s)	273
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	206, 335
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	2 cut(s)	208, 337
MboI	GATC	2 cut(s)	206, 335
MboII	GAAGA	3 cut(s)	142, 201, 257
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	2 cut(s)	38, 309
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	4 cut(s)	135, 180, 223, 340
MroI	TCCGGA	1 cut(s)	332
MroNI	GCCGGC	1 cut(s)	271
MslI	CAYNNNNRTG	1 cut(s)	298
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	3 cut(s)	142, 272, 333
MspR9I	CCNGG	2 cut(s)	14, 176
MunI	CAATTG	1 cut(s)	38
MvaI	CCWGG	2 cut(s)	14, 176
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	264, 359
NaeI	GCCGGC	1 cut(s)	273
NdeII	GATC	2 cut(s)	206, 335
NgoMIV	GCCGGC	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	19, 199
NmuCI	GTSAC	1 cut(s)	276
OliI	CACNNNNGTG	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	67, 158
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	12, 174
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	2 cut(s)	12, 174
PspN4I	GGNNCC	2 cut(s)	19, 199
PspPI	GGNCC	2 cut(s)	115, 197
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	298
SacII	CCGCGG	1 cut(s)	205
SatI	GCNGC	2 cut(s)	66, 157
Sau3AI	GATC	2 cut(s)	206, 335
Sau96I	GGNCC	2 cut(s)	115, 197
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	14, 176
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	5 cut(s)	48, 67, 302, 344, 359
SfaNI	GCATC	1 cut(s)	230
SfcI	CTRYAG	1 cut(s)	234
Sfr303I	CCGCGG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	115, 197
SmiMI	CAYNNNNRTG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	2 cut(s)	38, 309
SsiI	CCGC	3 cut(s)	156, 202, 204
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	12, 174
StyI	CCWWGG	1 cut(s)	46
TaqI	TCGA	2 cut(s)	324, 338
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	2 cut(s)	38, 309
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	326
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	276
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	2 cut(s)	115, 197
XapI	RAATTY	1 cut(s)	309
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.