MD07G1249200.v1.1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
31811662 .. 31816258
4597 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1249200.v1.1.491

Sequence Viewer

Length: 1380 bp
ATGGAGTTTACAGAGGCTTACAAGCAGACCGGTCCTTGTTGCTTCTCGCCTAATGCTCGCTACATTGCCGTCGCCGTCGACTACCGCCTCGTCATTCGCGACACTCTTTCTTTTAAGGTTGTGCAGTTGTTTTCATGTTTGGATAAGATAAGCTATATCGAATGGGCTCTTGATTCTGAATACATTCTTTGTGGTCTATATAAAAGACCAATGATACAAGCATGGTCACTAGCCCAACCTGAATGGACATGCAAAATAGATGAAGGTCCTGCCGGTATTGCCTATGCTAGGTGGAGCCCAGATAGCCGTCACATACTTACCACATCAGACTTCCAACTGCGGTTAACAGTTTGGTCGCTGTTAAACACAGCATGTGTACATGTGCAATGGCCAAAGCATCCTTCCAAGGGAGTTTCTTTTACCAAAGATGGGCAATTTGCTGCAATTTGCACAAGGCGTGACTGCAAGGACTATATTAATCTTCTATCCTGTCATACATGGGAAATAATGGGTGTATTTGCTGTGGACACATTGGACTTGGCCGATATTGAATGGTCACCAGATGACAGTGCAATTGTGATATGGGATTCGCCTCTAGACTATAAGGTTCTAATATACTCGCCGGATGGGAGGTGCCTATATAAGTATCAAGCATACGAAAGTGCATTGGGCGTAAAAAGTGTTTCATGGTCTCCATGTGGCCAGTTTCTAGCAGTGGGTAGTTATGACCAGATGTTGCGGGTTTTGAATCACTTGACTTGGAAGACTTTTGCTGAATTTATGCATCTATCTACTGTCCGTGCTCCCTGCTGTGCTGCCGTGTTTAAGGAAGTAGATGAGCCACTGCTACTTGATATGTCTGAGCTAAGTATAAGTGATGATTTTGCAGAAGGCAATAATGATGCTTCCGAAGGACACATCAGAGTCAGATACGAAGTTACAGAAATGCCCATCAGTTTGCCTTTTCAGAAGCCTCCTGTAGACAAGCCTAACCCCAAACAAGGAATTGGTCTAATGTCATGGAGCAACAATAGCCAATATATCTGTACCCGCAATGATAGCATGCCAAGCATTCTCTGGATATGGGACATACGCCATCTTGAACTCGCTGCTATCTTGGTGCAGAAAGATCCTATTCGTGCAGCAGTTTGGGATCCTACGTGCACTCGTCTTGTTGTTTGCACGGGAAGTTCTCATCTGTACATGTGGACTCCTGGTGGTGCCTACTGTGTGAGTATCCCGCCGCAACCACAGTTTAGCATAGTTGATCTAAAATGGAATTCAGATGGAAGCTGTCTTCTCCTGAAGGATAAAGAGTTGTTTTGCTGCGCTGCCGTTGCCGTTCTTCCTGAATCGAGCGAATATAGCTCGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

51.92

Weight (kDa)

5.03

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 13 - 192 3.8e-11 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 137 - 260 2.6e-06 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 633, 1220
AccI GTMKAC 2 cut(s) 78, 981
AccII CGCG 1 cut(s) 99
AciI CCGC 6 cut(s) 85, 340, 739, 1051, 1241, 1244
AclWI GGATC 3 cut(s) 1124, 1148, 1161
AcoI YGGCCR 3 cut(s) 389, 540, 700
AcsI RAATTY 2 cut(s) 776, 1279
AcuI CTGAAG 1 cut(s) 1325
AfaI GTAC 3 cut(s) 378, 1048, 1202
AfiI CCNNNNNNNGG 4 cut(s) 288, 407, 429, 1001
AflIII ACRYGT 2 cut(s) 379, 1203
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 3 cut(s) 551, 748, 1103
AjnI CCWGG 1 cut(s) 1213
AjuI GAANNNNNNNTTGG 2 cut(s) 385, 417
AluBI AGCT 4 cut(s) 153, 865, 1293, 1368
AluI AGCT 4 cut(s) 153, 865, 1293, 1368
Alw21I GWGCWC 2 cut(s) 805, 1166
Alw26I GTCTC 1 cut(s) 696
Alw44I GTGCAC 1 cut(s) 1162
AlwI GGATC 3 cut(s) 1124, 1148, 1161
AoxI GGCC 3 cut(s) 389, 540, 700
ApaLI GTGCAC 1 cut(s) 1162
ApeKI GCWGC 6 cut(s) 440, 815, 1109, 1142, 1326, 1331
ApoI RAATTY 2 cut(s) 776, 1279
AseI ATTAAT 1 cut(s) 477
AsiGI ACCGGT 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 1331
AspS9I GGNCC 2 cut(s) 32, 266
AsuHPI GGTGA 1 cut(s) 549
AvaII GGWCC 2 cut(s) 32, 266
BaeGI GKGCMC 1 cut(s) 1166
BalI TGGCCA 2 cut(s) 391, 702
BamHI GGATCC 1 cut(s) 1153
BanI GGYRCC 2 cut(s) 633, 1220
BanII GRGCYC 2 cut(s) 169, 299
BbsI GAAGAC 2 cut(s) 770, 1289
Bbv12I GWGCWC 2 cut(s) 805, 1166
BbvI GCAGC 6 cut(s) 427, 802, 1096, 1154, 1313, 1318
BccI CCATC 5 cut(s) 422, 620, 959, 1104, 1280
BceAI ACGGC 6 cut(s) 53, 59, 291, 803, 1319, 1325
BciT130I CCWGG 1 cut(s) 1215
BciVI GTATCC 1 cut(s) 1247
BcoDI GTCTC 1 cut(s) 696
BfaI CTAG 4 cut(s) 230, 288, 596, 710
BfmI CTRYAG 1 cut(s) 978
BfuI GTATCC 1 cut(s) 1247
BisI GCNGC 7 cut(s) 441, 816, 1110, 1143, 1244, 1327, 1332
BlsI GCNGC 7 cut(s) 442, 817, 1111, 1144, 1245, 1328, 1333
Bme1390I CCNGG 1 cut(s) 1215
Bme18I GGWCC 2 cut(s) 32, 266
BmgT120I GGNCC 2 cut(s) 32, 266
BmiI GGNNCC 4 cut(s) 296, 635, 1155, 1222
BmrFI CCNGG 1 cut(s) 1215
BmsI GCATC 3 cut(s) 406, 793, 892
BpiI GAAGAC 2 cut(s) 770, 1289
BsaAI YACGTR 1 cut(s) 1161
BsaI GGTCTC 1 cut(s) 696
BsaJI CCNNGG 1 cut(s) 405
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 4 cut(s) 288, 407, 429, 1001
Bse118I RCCGGY 2 cut(s) 29, 272
Bse1I ACTGG 1 cut(s) 703
Bse3DI GCAATG 3 cut(s) 63, 392, 1060
BseBI CCWGG 1 cut(s) 1215
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 3 cut(s) 397, 631, 1378
BseLI CCNNNNNNNGG 4 cut(s) 288, 407, 429, 1001
BseMI GCAATG 3 cut(s) 63, 392, 1060
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 1 cut(s) 703
BseSI GKGCMC 1 cut(s) 1166
BseXI GCAGC 6 cut(s) 427, 802, 1096, 1154, 1313, 1318
BsgI GTGCAG 3 cut(s) 143, 1142, 1161
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 391, 542, 702
BshNI GGYRCC 2 cut(s) 633, 1220
BshTI ACCGGT 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 805, 1166
BsiSI CCGG 3 cut(s) 30, 273, 623
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 4 cut(s) 288, 407, 429, 1001
BsmAI GTCTC 1 cut(s) 696
BsmFI GGGAC 1 cut(s) 1100
BsmI GAATGC 1 cut(s) 1071
BsnI GGCC 3 cut(s) 391, 542, 702
Bso31I GGTCTC 1 cut(s) 696
Bsp1286I GDGCHC 4 cut(s) 169, 299, 805, 1166
Bsp1407I TGTACA 2 cut(s) 376, 1200
Bsp143I GATC 3 cut(s) 1129, 1153, 1267
Bsp68I TCGCGA 1 cut(s) 99
BspACI CCGC 6 cut(s) 85, 340, 739, 1051, 1241, 1244
BspANI GGCC 3 cut(s) 391, 542, 702
BspCNI CTCAG 1 cut(s) 853
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 4 cut(s) 296, 635, 1155, 1222
BspPI GGATC 3 cut(s) 1124, 1148, 1161
BspT107I GGYRCC 2 cut(s) 633, 1220
BspTNI GGTCTC 1 cut(s) 696
BsrDI GCAATG 3 cut(s) 63, 392, 1060
BsrFI RCCGGY 2 cut(s) 29, 272
BsrGI TGTACA 2 cut(s) 376, 1200
BsrI ACTGG 1 cut(s) 703
BssAI RCCGGY 2 cut(s) 29, 272
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 3 cut(s) 1129, 1153, 1267
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 1215
Bst4CI ACNGT 5 cut(s) 349, 569, 796, 1229, 1254
BstAUI TGTACA 2 cut(s) 376, 1200
BstBAI YACGTR 1 cut(s) 1161
BstC8I GCNNGC 2 cut(s) 58, 1064
BstDEI CTNAG 2 cut(s) 861, 866
BstEII GGTNACC 1 cut(s) 555
BstENI CCTNNNNNAGG 1 cut(s) 286
BstF5I GGATG 3 cut(s) 397, 631, 1378
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 1331
BstKTI GATC 3 cut(s) 1132, 1156, 1270
BstMAI GTCTC 1 cut(s) 696
BstMBI GATC 3 cut(s) 1129, 1153, 1267
BstMWI GCNNNNNNNGC 7 cut(s) 278, 303, 1032, 1059, 1068, 1337, 1365
BstNI CCWGG 1 cut(s) 1215
BstNSI RCATGY 5 cut(s) 252, 375, 383, 1066, 1207
BstPI GGTNACC 1 cut(s) 555
BstSCI CCNGG 1 cut(s) 1213
BstSFI CTRYAG 1 cut(s) 978
BstSLI GKGCMC 1 cut(s) 1166
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 6 cut(s) 427, 802, 1096, 1154, 1313, 1318
BstV2I GAAGAC 2 cut(s) 770, 1289
BstX2I RGATCY 2 cut(s) 1129, 1153
BstYI RGATCY 2 cut(s) 1129, 1153
BsuI GTATCC 1 cut(s) 1247
BsuRI GGCC 3 cut(s) 391, 542, 702
BtsCI GGATG 3 cut(s) 397, 631, 1378
BtsI GCAGTG 2 cut(s) 720, 842
BtsIMutI CAGTG 3 cut(s) 574, 720, 842
BtuMI TCGCGA 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 58, 1064
CfoI GCGC 1 cut(s) 1331
Cfr10I RCCGGY 2 cut(s) 29, 272
Cfr13I GGNCC 2 cut(s) 32, 266
Csp6I GTAC 3 cut(s) 377, 1047, 1201
CspAI ACCGGT 1 cut(s) 29
CviQI GTAC 3 cut(s) 377, 1047, 1201
DdeI CTNAG 2 cut(s) 861, 866
DpnI GATC 3 cut(s) 1131, 1155, 1269
DpnII GATC 3 cut(s) 1129, 1153, 1267
EaeI YGGCCR 3 cut(s) 389, 540, 700
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 2 cut(s) 169, 299
Eco31I GGTCTC 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 32, 266
Eco57I CTGAAG 1 cut(s) 1325
Eco91I GGTNACC 1 cut(s) 555
EcoNI CCTNNNNNAGG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 1279
EcoRII CCWGG 1 cut(s) 1213
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 786
EcoT38I GRGCYC 2 cut(s) 169, 299
ErhI CCWWGG 1 cut(s) 405
FaqI GGGAC 1 cut(s) 1100
FauI CCCGC 3 cut(s) 732, 1058, 1248
FblI GTMKAC 2 cut(s) 78, 981
Fnu4HI GCNGC 7 cut(s) 441, 816, 1110, 1143, 1244, 1327, 1332
FokI GGATG 2 cut(s) 384, 638
FriOI GRGCYC 2 cut(s) 169, 299
Fsp4HI GCNGC 7 cut(s) 441, 816, 1110, 1143, 1244, 1327, 1332
FspBI CTAG 4 cut(s) 230, 288, 596, 710
GlaI GCGC 1 cut(s) 1330
GluI GCNGC 7 cut(s) 441, 816, 1110, 1143, 1244, 1327, 1332
HaeIII GGCC 3 cut(s) 391, 542, 702
HapII CCGG 3 cut(s) 30, 273, 623
HhaI GCGC 1 cut(s) 1331
Hin6I GCGC 1 cut(s) 1329
HinP1I GCGC 1 cut(s) 1329
HincII GTYRAC 2 cut(s) 79, 345
HindII GTYRAC 2 cut(s) 79, 345
HinfI GANTC 6 cut(s) 173, 587, 748, 924, 1210, 1352
HpaI GTTAAC 1 cut(s) 345
HpaII CCGG 3 cut(s) 30, 273, 623
HphI GGTGA 1 cut(s) 549
Hpy166II GTNNAC 8 cut(s) 9, 79, 345, 377, 526, 982, 1164, 1209
Hpy188I TCNGA 9 cut(s) 178, 328, 862, 910, 923, 929, 969, 1285, 1372
Hpy188III TCNNGA 7 cut(s) 98, 170, 596, 1078, 1100, 1303, 1349
Hpy8I GTNNAC 8 cut(s) 9, 79, 345, 377, 526, 982, 1164, 1209
Hpy99I CGWCG 2 cut(s) 74, 80
HpyAV CCTTC 5 cut(s) 257, 411, 884, 905, 1300
HpyCH4III ACNGT 5 cut(s) 349, 569, 796, 1229, 1254
HpyCH4IV ACGT 1 cut(s) 1160
HpyF10VI GCNNNNNNNGC 7 cut(s) 278, 303, 1032, 1059, 1068, 1337, 1365
HpyF3I CTNAG 2 cut(s) 861, 866
HpySE526I ACGT 1 cut(s) 1160
HspAI GCGC 1 cut(s) 1329
KspAI GTTAAC 1 cut(s) 345
Kzo9I GATC 3 cut(s) 1129, 1153, 1267
LmnI GCTCC 3 cut(s) 294, 808, 1023
Lsp1109I GCAGC 6 cut(s) 427, 802, 1096, 1154, 1313, 1318
LweI GCATC 3 cut(s) 406, 793, 892
MaeI CTAG 4 cut(s) 230, 288, 596, 710
MaeII ACGT 1 cut(s) 1160
MaeIII GTNAC 5 cut(s) 225, 308, 458, 555, 937
MalI GATC 3 cut(s) 1131, 1155, 1269
MboI GATC 3 cut(s) 1129, 1153, 1267
MboII GAAGA 4 cut(s) 473, 775, 1289, 1337
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 2 cut(s) 1129, 1153
MhlI GDGCHC 4 cut(s) 169, 299, 805, 1166
MlsI TGGCCA 2 cut(s) 391, 702
MluCI AATT 6 cut(s) 434, 444, 573, 776, 1005, 1279
MluNI TGGCCA 2 cut(s) 391, 702
MlyI GAGTC 2 cut(s) 933, 1204
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 5 cut(s) 7, 98, 603, 624, 984
Mox20I TGGCCA 2 cut(s) 391, 702
Mph1103I ATGCAT 1 cut(s) 786
MroXI GAANNNNTTC 1 cut(s) 183
MscI TGGCCA 2 cut(s) 391, 702
MseI TTAA 5 cut(s) 114, 344, 362, 477, 825
Msp20I TGGCCA 2 cut(s) 391, 702
MspI CCGG 3 cut(s) 30, 273, 623
MspR9I CCNGG 1 cut(s) 1215
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 1071
MvaI CCWGG 1 cut(s) 1215
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 7 cut(s) 278, 303, 1032, 1059, 1068, 1337, 1365
NdeII GATC 3 cut(s) 1129, 1153, 1267
NlaIV GGNNCC 4 cut(s) 296, 635, 1155, 1222
NmuCI GTSAC 4 cut(s) 225, 308, 458, 555
NruI TCGCGA 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 5 cut(s) 252, 375, 383, 1066, 1207
PaeI GCATGC 1 cut(s) 1066
PciI ACATGT 2 cut(s) 379, 1203
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 1071
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 4 cut(s) 173, 587, 748, 1352
PinAI ACCGGT 1 cut(s) 29
PkrI GCNGC 7 cut(s) 442, 817, 1111, 1144, 1245, 1328, 1333
PleI GAGTC 2 cut(s) 932, 1204
PpsI GAGTC 2 cut(s) 932, 1204
Ppu21I YACGTR 1 cut(s) 1161
PpuMI RGGWCCY 1 cut(s) 266
PscI ACATGT 2 cut(s) 379, 1203
PshBI ATTAAT 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 1213
PspEI GGTNACC 1 cut(s) 555
PspGI CCWGG 1 cut(s) 1213
PspN4I GGNNCC 4 cut(s) 296, 635, 1155, 1222
PspPI GGNCC 2 cut(s) 32, 266
PspPPI RGGWCCY 1 cut(s) 266
PsuI RGATCY 2 cut(s) 1129, 1153
RruI TCGCGA 1 cut(s) 99
RsaI GTAC 3 cut(s) 378, 1048, 1202
RsaNI GTAC 3 cut(s) 377, 1047, 1201
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 5 cut(s) 114, 344, 362, 477, 825
SatI GCNGC 7 cut(s) 441, 816, 1110, 1143, 1244, 1327, 1332
Sau3AI GATC 3 cut(s) 1129, 1153, 1267
Sau96I GGNCC 2 cut(s) 32, 266
SchI GAGTC 2 cut(s) 933, 1204
ScrFI CCNGG 1 cut(s) 1215
SduI GDGCHC 4 cut(s) 169, 299, 805, 1166
SfaNI GCATC 3 cut(s) 406, 793, 892
SfcI CTRYAG 1 cut(s) 978
SinI GGWCC 2 cut(s) 32, 266
SphI GCATGC 1 cut(s) 1066
Sse9I AATT 6 cut(s) 434, 444, 573, 776, 1005, 1279
SsiI CCGC 6 cut(s) 85, 340, 739, 1051, 1241, 1244
SspMI CTAG 4 cut(s) 230, 288, 596, 710
StyD4I CCNGG 1 cut(s) 1213
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 5 cut(s) 349, 569, 796, 1229, 1254
TaiI ACGT 1 cut(s) 1163
TaqI TCGA 3 cut(s) 78, 159, 1355
TasI AATT 6 cut(s) 434, 444, 573, 776, 1005, 1279
TatI WGTACW 2 cut(s) 376, 1200
TauI GCSGC 1 cut(s) 1246
TfiI GAWTC 4 cut(s) 173, 587, 748, 1352
Tru1I TTAA 5 cut(s) 114, 344, 362, 477, 825
Tru9I TTAA 5 cut(s) 114, 344, 362, 477, 825
TscAI CASTG 3 cut(s) 574, 720, 849
TseFI GTSAC 4 cut(s) 225, 308, 458, 555
TseI GCWGC 6 cut(s) 440, 815, 1109, 1142, 1326, 1331
Tsp45I GTSAC 4 cut(s) 225, 308, 458, 555
TspDTI ATGAA 3 cut(s) 123, 276, 675
TspGWI ACGGA 1 cut(s) 788
TspRI CASTG 3 cut(s) 574, 720, 849
VneI GTGCAC 1 cut(s) 1162
VpaK11BI GGWCC 2 cut(s) 32, 266
VspI ATTAAT 1 cut(s) 477
XagI CCTNNNNNAGG 1 cut(s) 286
XapI RAATTY 2 cut(s) 776, 1279
XbaI TCTAGA 1 cut(s) 595
XceI RCATGY 5 cut(s) 252, 375, 383, 1066, 1207
XcmI CCANNNNNNNNNTGG 1 cut(s) 1074
XmiI GTMKAC 2 cut(s) 78, 981
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 4 cut(s) 230, 288, 596, 710
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.