WD repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07590 AT5G07590 AT5G07590 AT5G07590 |
| fragaria_vesca | FvH4_7g26970 FvH4_7g26970 FvH4_7g26970 |
| malus_domestica | MD01G1177500.v1.1 MD07G1249200.v1.1 |
| prunus_persica | Prupe.2G272800_v2.0.a1 Prupe.2G272800_v2.0.a1 Prupe.2G272800_v2.0.a1 |
| pyrus_communis | pycom01g18800 pycom07g22240 |
| rosa_chinensis | RchiOBHm_Chr1g0373701 |
| rosa_laevigata | RLG00000026807 |
| rosa_multiflora | Rmu_sc0002606.1_g000002 Rmu_sc0010519.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00284060 |
| rosa_rugosa | Rorug01G0379000 Rorug01G0379100 |
| rosa_samantha | Rh1AG388400 Rh1BG352800 Rh1CG365700 Rh1DG383200 |
| rosa_wichuraiana | Rw1G034680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 633 |
| AccII | CGCG | 1 cut(s) | 1168 |
| AciI | CCGC | 3 cut(s) | 739, 1217, 1247 |
| AclWI | GGATC | 2 cut(s) | 1088, 1124 |
| AcoI | YGGCCR | 2 cut(s) | 389, 700 |
| AcsI | RAATTY | 3 cut(s) | 434, 776, 1276 |
| AcuI | CTGAAG | 2 cut(s) | 930, 1322 |
| AfaI | GTAC | 5 cut(s) | 182, 378, 932, 1202, 1341 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 407, 429, 627, 1001 |
| AflIII | ACRYGT | 3 cut(s) | 379, 1166, 1203 |
| AgsI | TTSAA | 2 cut(s) | 115, 748 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 385, 417 |
| AluBI | AGCT | 7 cut(s) | 17, 127, 153, 1105, 1191, 1290, 1365 |
| AluI | AGCT | 7 cut(s) | 17, 127, 153, 1105, 1191, 1290, 1365 |
| Alw21I | GWGCWC | 2 cut(s) | 805, 1166 |
| Alw26I | GTCTC | 2 cut(s) | 696, 1175 |
| Alw44I | GTGCAC | 1 cut(s) | 1162 |
| AlwI | GGATC | 2 cut(s) | 1088, 1124 |
| AoxI | GGCC | 4 cut(s) | 165, 231, 389, 700 |
| ApaLI | GTGCAC | 1 cut(s) | 1162 |
| ApeKI | GCWGC | 6 cut(s) | 124, 440, 847, 1142, 1323, 1328 |
| ApoI | RAATTY | 3 cut(s) | 434, 776, 1276 |
| AseI | ATTAAT | 1 cut(s) | 477 |
| AspLEI | GCGC | 1 cut(s) | 1328 |
| AspS9I | GGNCC | 5 cut(s) | 32, 165, 232, 266, 1153 |
| AsuC2I | CCSGG | 1 cut(s) | 299 |
| AsuHPI | GGTGA | 2 cut(s) | 39, 743 |
| AvaII | GGWCC | 3 cut(s) | 32, 266, 1153 |
| BaeGI | GKGCMC | 2 cut(s) | 951, 1166 |
| BalI | TGGCCA | 2 cut(s) | 391, 702 |
| BanI | GGYRCC | 1 cut(s) | 633 |
| BanII | GRGCYC | 1 cut(s) | 299 |
| BbsI | GAAGAC | 1 cut(s) | 770 |
| Bbv12I | GWGCWC | 2 cut(s) | 805, 1166 |
| BbvI | GCAGC | 6 cut(s) | 136, 427, 834, 1154, 1310, 1315 |
| BccI | CCATC | 6 cut(s) | 176, 285, 422, 620, 1104, 1277 |
| BceAI | ACGGC | 3 cut(s) | 53, 59, 291 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1153, 1187 |
| BciVI | GTATCC | 1 cut(s) | 1247 |
| BcnI | CCSGG | 1 cut(s) | 299 |
| BcoDI | GTCTC | 2 cut(s) | 696, 1175 |
| BfaI | CTAG | 3 cut(s) | 288, 710, 1050 |
| BfmI | CTRYAG | 1 cut(s) | 978 |
| BfuI | GTATCC | 1 cut(s) | 1247 |
| BisI | GCNGC | 6 cut(s) | 125, 441, 848, 1143, 1324, 1329 |
| BlsI | GCNGC | 6 cut(s) | 126, 442, 849, 1144, 1325, 1330 |
| Bme1390I | CCNGG | 1 cut(s) | 299 |
| Bme18I | GGWCC | 3 cut(s) | 32, 266, 1153 |
| BmgT120I | GGNCC | 5 cut(s) | 32, 165, 232, 266, 1153 |
| BmiI | GGNNCC | 5 cut(s) | 33, 296, 635, 1154, 1155 |
| BmrFI | CCNGG | 1 cut(s) | 299 |
| BmsI | GCATC | 3 cut(s) | 406, 793, 892 |
| BoxI | GACNNNNGTC | 1 cut(s) | 306 |
| BpiI | GAAGAC | 1 cut(s) | 770 |
| BpuEI | CTTGAG | 1 cut(s) | 1121 |
| BpuMI | CCSGG | 1 cut(s) | 299 |
| Bsa29I | ATCGAT | 1 cut(s) | 171 |
| BsaAI | YACGTR | 1 cut(s) | 1161 |
| BsaI | GGTCTC | 1 cut(s) | 696 |
| BsaJI | CCNNGG | 1 cut(s) | 405 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 407, 429, 627, 1001 |
| Bse1I | ACTGG | 3 cut(s) | 703, 1189, 1353 |
| Bse3DI | GCAATG | 3 cut(s) | 63, 392, 901 |
| BseCI | ATCGAT | 1 cut(s) | 171 |
| BseDI | CCNNGG | 1 cut(s) | 405 |
| BseGI | GGATG | 3 cut(s) | 397, 841, 1288 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 407, 429, 627, 1001 |
| BseMI | GCAATG | 3 cut(s) | 63, 392, 901 |
| BseMII | CTCAG | 1 cut(s) | 168 |
| BseNI | ACTGG | 3 cut(s) | 703, 1189, 1353 |
| BseSI | GKGCMC | 2 cut(s) | 951, 1166 |
| BseXI | GCAGC | 6 cut(s) | 136, 427, 834, 1154, 1310, 1315 |
| BsgI | GTGCAG | 3 cut(s) | 143, 1030, 1142 |
| Bsh1236I | CGCG | 1 cut(s) | 1168 |
| BshFI | GGCC | 4 cut(s) | 167, 233, 391, 702 |
| BshNI | GGYRCC | 1 cut(s) | 633 |
| BshVI | ATCGAT | 1 cut(s) | 171 |
| BsiHKAI | GWGCWC | 2 cut(s) | 805, 1166 |
| BsiSI | CCGG | 1 cut(s) | 299 |
| BslFI | GGGAC | 3 cut(s) | 113, 1100, 1166 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 407, 429, 627, 1001 |
| BsmAI | GTCTC | 2 cut(s) | 696, 1175 |
| BsmBI | CGTCTC | 1 cut(s) | 1175 |
| BsmFI | GGGAC | 3 cut(s) | 113, 1100, 1166 |
| BsnI | GGCC | 4 cut(s) | 167, 233, 391, 702 |
| Bso31I | GGTCTC | 1 cut(s) | 696 |
| Bsp1286I | GDGCHC | 4 cut(s) | 299, 805, 951, 1166 |
| Bsp1407I | TGTACA | 2 cut(s) | 376, 1200 |
| Bsp143I | GATC | 3 cut(s) | 1080, 1129, 1264 |
| BspACI | CCGC | 3 cut(s) | 739, 1217, 1247 |
| BspANI | GGCC | 4 cut(s) | 167, 233, 391, 702 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspDI | ATCGAT | 1 cut(s) | 171 |
| BspFNI | CGCG | 1 cut(s) | 1168 |
| BspLI | GGNNCC | 5 cut(s) | 33, 296, 635, 1154, 1155 |
| BspMAI | CTGCAG | 1 cut(s) | 982 |
| BspPI | GGATC | 2 cut(s) | 1088, 1124 |
| BspT107I | GGYRCC | 1 cut(s) | 633 |
| BspTNI | GGTCTC | 1 cut(s) | 696 |
| BsrDI | GCAATG | 3 cut(s) | 63, 392, 901 |
| BsrGI | TGTACA | 2 cut(s) | 376, 1200 |
| BsrI | ACTGG | 3 cut(s) | 703, 1189, 1353 |
| BssECI | CCNNGG | 1 cut(s) | 405 |
| BssMI | GATC | 3 cut(s) | 1080, 1129, 1264 |
| BssT1I | CCWWGG | 1 cut(s) | 405 |
| Bst4CI | ACNGT | 4 cut(s) | 349, 569, 796, 1229 |
| BstAUI | TGTACA | 2 cut(s) | 376, 1200 |
| BstBAI | YACGTR | 1 cut(s) | 1161 |
| BstC8I | GCNNGC | 3 cut(s) | 1064, 1107, 1166 |
| BstDEI | CTNAG | 2 cut(s) | 177, 1366 |
| BstF5I | GGATG | 3 cut(s) | 397, 841, 1288 |
| BstFNI | CGCG | 1 cut(s) | 1168 |
| BstHHI | GCGC | 1 cut(s) | 1328 |
| BstKTI | GATC | 3 cut(s) | 1083, 1132, 1267 |
| BstMAI | GTCTC | 2 cut(s) | 696, 1175 |
| BstMBI | GATC | 3 cut(s) | 1080, 1129, 1264 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 278, 303, 847, 1032, 1188, 1334 |
| BstNSI | RCATGY | 5 cut(s) | 252, 375, 383, 1066, 1207 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 306 |
| BstSCI | CCNGG | 1 cut(s) | 297 |
| BstSFI | CTRYAG | 1 cut(s) | 978 |
| BstSLI | GKGCMC | 2 cut(s) | 951, 1166 |
| BstUI | CGCG | 1 cut(s) | 1168 |
| BstV1I | GCAGC | 6 cut(s) | 136, 427, 834, 1154, 1310, 1315 |
| BstV2I | GAAGAC | 1 cut(s) | 770 |
| BstX2I | RGATCY | 2 cut(s) | 1080, 1129 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1117 |
| BstYI | RGATCY | 2 cut(s) | 1080, 1129 |
| Bsu15I | ATCGAT | 1 cut(s) | 171 |
| BsuI | GTATCC | 1 cut(s) | 1247 |
| BsuRI | GGCC | 4 cut(s) | 167, 233, 391, 702 |
| BsuTUI | ATCGAT | 1 cut(s) | 171 |
| BtsCI | GGATG | 3 cut(s) | 397, 841, 1288 |
| BtsI | GCAGTG | 4 cut(s) | 720, 813, 842, 1033 |
| BtsIMutI | CAGTG | 7 cut(s) | 574, 720, 813, 842, 1033, 1182, 1360 |
| Cac8I | GCNNGC | 3 cut(s) | 1064, 1107, 1166 |
| CfoI | GCGC | 1 cut(s) | 1328 |
| Cfr13I | GGNCC | 5 cut(s) | 32, 165, 232, 266, 1153 |
| ClaI | ATCGAT | 1 cut(s) | 171 |
| CseI | GACGC | 1 cut(s) | 1157 |
| Csp6I | GTAC | 5 cut(s) | 181, 377, 931, 1201, 1340 |
| CviQI | GTAC | 5 cut(s) | 181, 377, 931, 1201, 1340 |
| DdeI | CTNAG | 2 cut(s) | 177, 1366 |
| DpnI | GATC | 3 cut(s) | 1082, 1131, 1266 |
| DpnII | GATC | 3 cut(s) | 1080, 1129, 1264 |
| EaeI | YGGCCR | 2 cut(s) | 389, 700 |
| Eco130I | CCWWGG | 1 cut(s) | 405 |
| Eco24I | GRGCYC | 1 cut(s) | 299 |
| Eco31I | GGTCTC | 1 cut(s) | 696 |
| Eco47I | GGWCC | 3 cut(s) | 32, 266, 1153 |
| Eco57I | CTGAAG | 2 cut(s) | 930, 1322 |
| EcoO109I | RGGNCCY | 3 cut(s) | 32, 266, 1153 |
| EcoRI | GAATTC | 1 cut(s) | 1276 |
| EcoT14I | CCWWGG | 1 cut(s) | 405 |
| EcoT22I | ATGCAT | 1 cut(s) | 786 |
| EcoT38I | GRGCYC | 1 cut(s) | 299 |
| ErhI | CCWWGG | 1 cut(s) | 405 |
| Esp3I | CGTCTC | 1 cut(s) | 1175 |
| FaqI | GGGAC | 3 cut(s) | 113, 1100, 1166 |
| FauI | CCCGC | 2 cut(s) | 732, 1210 |
| FauNDI | CATATG | 1 cut(s) | 655 |
| Fnu4HI | GCNGC | 6 cut(s) | 125, 441, 848, 1143, 1324, 1329 |
| FokI | GGATG | 3 cut(s) | 384, 848, 1295 |
| FriOI | GRGCYC | 1 cut(s) | 299 |
| Fsp4HI | GCNGC | 6 cut(s) | 125, 441, 848, 1143, 1324, 1329 |
| FspBI | CTAG | 3 cut(s) | 288, 710, 1050 |
| GlaI | GCGC | 1 cut(s) | 1327 |
| GluI | GCNGC | 6 cut(s) | 125, 441, 848, 1143, 1324, 1329 |
| HaeIII | GGCC | 4 cut(s) | 167, 233, 391, 702 |
| HapII | CCGG | 1 cut(s) | 299 |
| HgaI | GACGC | 1 cut(s) | 1157 |
| HhaI | GCGC | 1 cut(s) | 1328 |
| Hin6I | GCGC | 1 cut(s) | 1326 |
| HinP1I | GCGC | 1 cut(s) | 1326 |
| HindIII | AAGCTT | 1 cut(s) | 15 |
| HinfI | GANTC | 6 cut(s) | 173, 587, 748, 1210, 1313, 1349 |
| HpaII | CCGG | 1 cut(s) | 299 |
| HphI | GGTGA | 2 cut(s) | 39, 743 |
| Hpy166II | GTNNAC | 5 cut(s) | 9, 377, 526, 1164, 1209 |
| Hpy188I | TCNGA | 8 cut(s) | 178, 328, 544, 862, 910, 923, 1282, 1369 |
| Hpy188III | TCNNGA | 6 cut(s) | 98, 596, 967, 1100, 1300, 1346 |
| Hpy8I | GTNNAC | 5 cut(s) | 9, 377, 526, 1164, 1209 |
| Hpy99I | CGWCG | 2 cut(s) | 74, 80 |
| HpyAV | CCTTC | 5 cut(s) | 121, 257, 411, 905, 1297 |
| HpyCH4III | ACNGT | 4 cut(s) | 349, 569, 796, 1229 |
| HpyCH4IV | ACGT | 1 cut(s) | 1160 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 278, 303, 847, 1032, 1188, 1334 |
| HpyF3I | CTNAG | 2 cut(s) | 177, 1366 |
| HpySE526I | ACGT | 1 cut(s) | 1160 |
| HspAI | GCGC | 1 cut(s) | 1326 |
| KflI | GGGWCCC | 1 cut(s) | 1153 |
| Kzo9I | GATC | 3 cut(s) | 1080, 1129, 1264 |
| LmnI | GCTCC | 3 cut(s) | 294, 808, 1023 |
| Lsp1109I | GCAGC | 6 cut(s) | 136, 427, 834, 1154, 1310, 1315 |
| LweI | GCATC | 3 cut(s) | 406, 793, 892 |
| MaeI | CTAG | 3 cut(s) | 288, 710, 1050 |
| MaeII | ACGT | 1 cut(s) | 1160 |
| MaeIII | GTNAC | 5 cut(s) | 59, 308, 354, 937, 1028 |
| MalI | GATC | 3 cut(s) | 1082, 1131, 1266 |
| MboI | GATC | 3 cut(s) | 1080, 1129, 1264 |
| MboII | GAAGA | 2 cut(s) | 473, 775 |
| MflI | RGATCY | 2 cut(s) | 1080, 1129 |
| MhlI | GDGCHC | 4 cut(s) | 299, 805, 951, 1166 |
| MlsI | TGGCCA | 2 cut(s) | 391, 702 |
| MluCI | AATT | 6 cut(s) | 434, 444, 776, 1005, 1134, 1276 |
| MluI | ACGCGT | 1 cut(s) | 1166 |
| MluNI | TGGCCA | 2 cut(s) | 391, 702 |
| MlyI | GAGTC | 2 cut(s) | 1204, 1322 |
| MmeI | TCCRAC | 1 cut(s) | 358 |
| MnlI | CCTC | 5 cut(s) | 98, 603, 624, 928, 984 |
| Mox20I | TGGCCA | 2 cut(s) | 391, 702 |
| Mph1103I | ATGCAT | 1 cut(s) | 786 |
| MscI | TGGCCA | 2 cut(s) | 391, 702 |
| MseI | TTAA | 5 cut(s) | 344, 362, 477, 825, 872 |
| Msp20I | TGGCCA | 2 cut(s) | 391, 702 |
| MspA1I | CMGCKG | 1 cut(s) | 127 |
| MspI | CCGG | 1 cut(s) | 299 |
| MspR9I | CCNGG | 1 cut(s) | 299 |
| MvnI | CGCG | 1 cut(s) | 1168 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 278, 303, 847, 1032, 1188, 1334 |
| NciI | CCSGG | 1 cut(s) | 299 |
| NdeI | CATATG | 1 cut(s) | 655 |
| NdeII | GATC | 3 cut(s) | 1080, 1129, 1264 |
| NlaIV | GGNNCC | 5 cut(s) | 33, 296, 635, 1154, 1155 |
| NmuCI | GTSAC | 3 cut(s) | 308, 354, 1028 |
| NsiI | ATGCAT | 1 cut(s) | 786 |
| NspI | RCATGY | 5 cut(s) | 252, 375, 383, 1066, 1207 |
| PaeI | GCATGC | 1 cut(s) | 1066 |
| PciI | ACATGT | 2 cut(s) | 379, 1203 |
| PfeI | GAWTC | 4 cut(s) | 173, 587, 748, 1349 |
| PkrI | GCNGC | 6 cut(s) | 126, 442, 849, 1144, 1325, 1330 |
| PleI | GAGTC | 2 cut(s) | 1204, 1321 |
| PpsI | GAGTC | 2 cut(s) | 1204, 1321 |
| Ppu21I | YACGTR | 1 cut(s) | 1161 |
| PpuMI | RGGWCCY | 3 cut(s) | 32, 266, 1153 |
| PscI | ACATGT | 2 cut(s) | 379, 1203 |
| PshAI | GACNNNNGTC | 1 cut(s) | 306 |
| PshBI | ATTAAT | 1 cut(s) | 477 |
| Psp5II | RGGWCCY | 3 cut(s) | 32, 266, 1153 |
| PspN4I | GGNNCC | 5 cut(s) | 33, 296, 635, 1154, 1155 |
| PspPI | GGNCC | 5 cut(s) | 32, 165, 232, 266, 1153 |
| PspPPI | RGGWCCY | 3 cut(s) | 32, 266, 1153 |
| PstI | CTGCAG | 1 cut(s) | 982 |
| PsuI | RGATCY | 2 cut(s) | 1080, 1129 |
| PvuII | CAGCTG | 1 cut(s) | 127 |
| RsaI | GTAC | 5 cut(s) | 182, 378, 932, 1202, 1341 |
| RsaNI | GTAC | 5 cut(s) | 181, 377, 931, 1201, 1340 |
| SaqAI | TTAA | 5 cut(s) | 344, 362, 477, 825, 872 |
| SatI | GCNGC | 6 cut(s) | 125, 441, 848, 1143, 1324, 1329 |
| Sau3AI | GATC | 3 cut(s) | 1080, 1129, 1264 |
| Sau96I | GGNCC | 5 cut(s) | 32, 165, 232, 266, 1153 |
| SchI | GAGTC | 2 cut(s) | 1204, 1322 |
| ScrFI | CCNGG | 1 cut(s) | 299 |
| SduI | GDGCHC | 4 cut(s) | 299, 805, 951, 1166 |
| SfaNI | GCATC | 3 cut(s) | 406, 793, 892 |
| SfcI | CTRYAG | 1 cut(s) | 978 |
| SinI | GGWCC | 3 cut(s) | 32, 266, 1153 |
| SmlI | CTYRAG | 1 cut(s) | 1100 |
| SmoI | CTYRAG | 1 cut(s) | 1100 |
| SphI | GCATGC | 1 cut(s) | 1066 |
| Sse9I | AATT | 6 cut(s) | 434, 444, 776, 1005, 1134, 1276 |
| SsiI | CCGC | 3 cut(s) | 739, 1217, 1247 |
| SspMI | CTAG | 3 cut(s) | 288, 710, 1050 |
| StyD4I | CCNGG | 1 cut(s) | 297 |
| StyI | CCWWGG | 1 cut(s) | 405 |
| TaaI | ACNGT | 4 cut(s) | 349, 569, 796, 1229 |
| TaiI | ACGT | 1 cut(s) | 1163 |
| TaqI | TCGA | 6 cut(s) | 78, 159, 171, 597, 1138, 1263 |
| TasI | AATT | 6 cut(s) | 434, 444, 776, 1005, 1134, 1276 |
| TatI | WGTACW | 4 cut(s) | 180, 376, 1200, 1339 |
| TfiI | GAWTC | 4 cut(s) | 173, 587, 748, 1349 |
| Tru1I | TTAA | 5 cut(s) | 344, 362, 477, 825, 872 |
| Tru9I | TTAA | 5 cut(s) | 344, 362, 477, 825, 872 |
| TscAI | CASTG | 7 cut(s) | 574, 720, 820, 849, 1033, 1189, 1360 |
| TseFI | GTSAC | 3 cut(s) | 308, 354, 1028 |
| TseI | GCWGC | 6 cut(s) | 124, 440, 847, 1142, 1323, 1328 |
| Tsp45I | GTSAC | 3 cut(s) | 308, 354, 1028 |
| TspDTI | ATGAA | 4 cut(s) | 123, 276, 672, 675 |
| TspGWI | ACGGA | 1 cut(s) | 788 |
| TspRI | CASTG | 7 cut(s) | 574, 720, 820, 849, 1033, 1189, 1360 |
| VneI | GTGCAC | 1 cut(s) | 1162 |
| VpaK11BI | GGWCC | 3 cut(s) | 32, 266, 1153 |
| VspI | ATTAAT | 1 cut(s) | 477 |
| XapI | RAATTY | 3 cut(s) | 434, 776, 1276 |
| XceI | RCATGY | 5 cut(s) | 252, 375, 383, 1066, 1207 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1074 |
| XspI | CTAG | 3 cut(s) | 288, 710, 1050 |
| Zsp2I | ATGCAT | 1 cut(s) | 786 |