Prupe.2G272800_v2.0.a1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
27585064 .. 27589489
4426 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G272800.3

Sequence Viewer

Length: 1377 bp
ATGGAGTTCACAGAAGCTTACAAGCAGACGGGTCCTTGTTGTTTCTCACCCAATGCTCGTTACATTGCCGTCGCCGTCGATTATCGCCTCGTTATTCGGGACACTCTTTCCTTCAAGGTTGTGCAGCTGTTTTCATGCTTGGACAAGATAAGCTATATCGAATGGGCCATCGATTCTGAGTACATTCTTTGTGGTCTATATAAAAGACCAATGATACAGGCATGGTCGTTGGCCCAACCTGAATGGACATGCAAGATAGATGAAGGTCCTGCTGGTATTGCGTATGCTAGATGGAGCCCGGACAGCCGTCACATACTTACCACATCAGACTTCCAACTGCGTTTAACAGTTTGGTCACTATTAAACACAGCATGTGTACATGTGCAATGGCCAAAGCATCCTTCCAAGGGCGTTTCTTTTACCAAAGATGGGAAATTTGCTGCAATTTGCACAAGGCGTGATTGCAAGGACTACATTAATCTTCTGTCTTGTCATACATGGGAGATAATGGGTGTATTTGCTGTGGACACATTGGACTTGTCTGATACTGAATGGTCGCCAGATGACAGTGCAATAGTGATATGGGATTCGCCTCTCGAATATAAGGTTCTAATATACTCCCCAGATGGGAGGTGCCTATATAAGTATCAAGCATATGAAAGTGGATTGGGCGTAAAAAGTGTTTCATGGTCTCCTTGTGGCCAGTTTCTAGCAGTGGGTAGTTATGACCAGATGTTGCGGGTTTTGAATCACCTGACTTGGAAGACTTTTGCTGAATTTATGCATCTATCTACTGTCCGTGCTCCTTGTTGCACTGCTGTTTTTAAGGAAGTGGATGAGCCACTGCTGCTTGATATGTCCGAGTTATGTTTAAGTGATGATTTTGCACAAGGCAATGATGATGCTTCTGAAGGACATTTCAGAGTTAGGTACGAGGTTACAGAAGTGCCCATTAGTTTGCCTTTCCAGAAGCCTCCTGCAGACAAACCTAACCCCAAACAAGGAATTGGTCTAATGTCATGGAGCAGTGACAGCCAATACATCTGCACTAGGAATGATAGCATGCCAAGTATTCTGTGGATCTGGGACATACGCCATCTTGAGCTTGCCACTATCTTGGTGCAGAAAGATCCAATTCGAGCAGCAGTTTGGGACCCTACGTGCACGCGTCTCGTTGTTTGCACTGGAAGCTCACATTTGTACATGTGGACTCCTGCGGGTGCTTACTGTGTGAGTATCCCACTACCGCAGTTTAGCATAGTCGATCTAAAATGGAATTCGGATGGAAGCTGTCTTTTCCTGAAGGATAAAGAGTCATTTTGCTGCGCTGCTGTTGCTGTACTTCCAGAATCCAGTGAATATAGCTCAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

459

Amino Acids

51.85

Weight (kDa)

5.03

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 633
AccII CGCG 1 cut(s) 1168
AciI CCGC 3 cut(s) 739, 1217, 1247
AclWI GGATC 2 cut(s) 1088, 1124
AcoI YGGCCR 2 cut(s) 389, 700
AcsI RAATTY 3 cut(s) 434, 776, 1276
AcuI CTGAAG 2 cut(s) 930, 1322
AfaI GTAC 5 cut(s) 182, 378, 932, 1202, 1341
AfiI CCNNNNNNNGG 4 cut(s) 407, 429, 627, 1001
AflIII ACRYGT 3 cut(s) 379, 1166, 1203
AgsI TTSAA 2 cut(s) 115, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 385, 417
AluBI AGCT 7 cut(s) 17, 127, 153, 1105, 1191, 1290, 1365
AluI AGCT 7 cut(s) 17, 127, 153, 1105, 1191, 1290, 1365
Alw21I GWGCWC 2 cut(s) 805, 1166
Alw26I GTCTC 2 cut(s) 696, 1175
Alw44I GTGCAC 1 cut(s) 1162
AlwI GGATC 2 cut(s) 1088, 1124
AoxI GGCC 4 cut(s) 165, 231, 389, 700
ApaLI GTGCAC 1 cut(s) 1162
ApeKI GCWGC 6 cut(s) 124, 440, 847, 1142, 1323, 1328
ApoI RAATTY 3 cut(s) 434, 776, 1276
AseI ATTAAT 1 cut(s) 477
AspLEI GCGC 1 cut(s) 1328
AspS9I GGNCC 5 cut(s) 32, 165, 232, 266, 1153
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 39, 743
AvaII GGWCC 3 cut(s) 32, 266, 1153
BaeGI GKGCMC 2 cut(s) 951, 1166
BalI TGGCCA 2 cut(s) 391, 702
BanI GGYRCC 1 cut(s) 633
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 770
Bbv12I GWGCWC 2 cut(s) 805, 1166
BbvI GCAGC 6 cut(s) 136, 427, 834, 1154, 1310, 1315
BccI CCATC 6 cut(s) 176, 285, 422, 620, 1104, 1277
BceAI ACGGC 3 cut(s) 53, 59, 291
BcgI CGANNNNNNTGC 2 cut(s) 1153, 1187
BciVI GTATCC 1 cut(s) 1247
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 696, 1175
BfaI CTAG 3 cut(s) 288, 710, 1050
BfmI CTRYAG 1 cut(s) 978
BfuI GTATCC 1 cut(s) 1247
BisI GCNGC 6 cut(s) 125, 441, 848, 1143, 1324, 1329
BlsI GCNGC 6 cut(s) 126, 442, 849, 1144, 1325, 1330
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 3 cut(s) 32, 266, 1153
BmgT120I GGNCC 5 cut(s) 32, 165, 232, 266, 1153
BmiI GGNNCC 5 cut(s) 33, 296, 635, 1154, 1155
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 3 cut(s) 406, 793, 892
BoxI GACNNNNGTC 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 770
BpuEI CTTGAG 1 cut(s) 1121
BpuMI CCSGG 1 cut(s) 299
Bsa29I ATCGAT 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 1161
BsaI GGTCTC 1 cut(s) 696
BsaJI CCNNGG 1 cut(s) 405
Bsc4I CCNNNNNNNGG 4 cut(s) 407, 429, 627, 1001
Bse1I ACTGG 3 cut(s) 703, 1189, 1353
Bse3DI GCAATG 3 cut(s) 63, 392, 901
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 3 cut(s) 397, 841, 1288
BseLI CCNNNNNNNGG 4 cut(s) 407, 429, 627, 1001
BseMI GCAATG 3 cut(s) 63, 392, 901
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 3 cut(s) 703, 1189, 1353
BseSI GKGCMC 2 cut(s) 951, 1166
BseXI GCAGC 6 cut(s) 136, 427, 834, 1154, 1310, 1315
BsgI GTGCAG 3 cut(s) 143, 1030, 1142
Bsh1236I CGCG 1 cut(s) 1168
BshFI GGCC 4 cut(s) 167, 233, 391, 702
BshNI GGYRCC 1 cut(s) 633
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 2 cut(s) 805, 1166
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 3 cut(s) 113, 1100, 1166
BslI CCNNNNNNNGG 4 cut(s) 407, 429, 627, 1001
BsmAI GTCTC 2 cut(s) 696, 1175
BsmBI CGTCTC 1 cut(s) 1175
BsmFI GGGAC 3 cut(s) 113, 1100, 1166
BsnI GGCC 4 cut(s) 167, 233, 391, 702
Bso31I GGTCTC 1 cut(s) 696
Bsp1286I GDGCHC 4 cut(s) 299, 805, 951, 1166
Bsp1407I TGTACA 2 cut(s) 376, 1200
Bsp143I GATC 3 cut(s) 1080, 1129, 1264
BspACI CCGC 3 cut(s) 739, 1217, 1247
BspANI GGCC 4 cut(s) 167, 233, 391, 702
BspCNI CTCAG 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 171
BspFNI CGCG 1 cut(s) 1168
BspLI GGNNCC 5 cut(s) 33, 296, 635, 1154, 1155
BspMAI CTGCAG 1 cut(s) 982
BspPI GGATC 2 cut(s) 1088, 1124
BspT107I GGYRCC 1 cut(s) 633
BspTNI GGTCTC 1 cut(s) 696
BsrDI GCAATG 3 cut(s) 63, 392, 901
BsrGI TGTACA 2 cut(s) 376, 1200
BsrI ACTGG 3 cut(s) 703, 1189, 1353
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 3 cut(s) 1080, 1129, 1264
BssT1I CCWWGG 1 cut(s) 405
Bst4CI ACNGT 4 cut(s) 349, 569, 796, 1229
BstAUI TGTACA 2 cut(s) 376, 1200
BstBAI YACGTR 1 cut(s) 1161
BstC8I GCNNGC 3 cut(s) 1064, 1107, 1166
BstDEI CTNAG 2 cut(s) 177, 1366
BstF5I GGATG 3 cut(s) 397, 841, 1288
BstFNI CGCG 1 cut(s) 1168
BstHHI GCGC 1 cut(s) 1328
BstKTI GATC 3 cut(s) 1083, 1132, 1267
BstMAI GTCTC 2 cut(s) 696, 1175
BstMBI GATC 3 cut(s) 1080, 1129, 1264
BstMWI GCNNNNNNNGC 6 cut(s) 278, 303, 847, 1032, 1188, 1334
BstNSI RCATGY 5 cut(s) 252, 375, 383, 1066, 1207
BstPAI GACNNNNGTC 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 978
BstSLI GKGCMC 2 cut(s) 951, 1166
BstUI CGCG 1 cut(s) 1168
BstV1I GCAGC 6 cut(s) 136, 427, 834, 1154, 1310, 1315
BstV2I GAAGAC 1 cut(s) 770
BstX2I RGATCY 2 cut(s) 1080, 1129
BstXI CCANNNNNNTGG 1 cut(s) 1117
BstYI RGATCY 2 cut(s) 1080, 1129
Bsu15I ATCGAT 1 cut(s) 171
BsuI GTATCC 1 cut(s) 1247
BsuRI GGCC 4 cut(s) 167, 233, 391, 702
BsuTUI ATCGAT 1 cut(s) 171
BtsCI GGATG 3 cut(s) 397, 841, 1288
BtsI GCAGTG 4 cut(s) 720, 813, 842, 1033
BtsIMutI CAGTG 7 cut(s) 574, 720, 813, 842, 1033, 1182, 1360
Cac8I GCNNGC 3 cut(s) 1064, 1107, 1166
CfoI GCGC 1 cut(s) 1328
Cfr13I GGNCC 5 cut(s) 32, 165, 232, 266, 1153
ClaI ATCGAT 1 cut(s) 171
CseI GACGC 1 cut(s) 1157
Csp6I GTAC 5 cut(s) 181, 377, 931, 1201, 1340
CviQI GTAC 5 cut(s) 181, 377, 931, 1201, 1340
DdeI CTNAG 2 cut(s) 177, 1366
DpnI GATC 3 cut(s) 1082, 1131, 1266
DpnII GATC 3 cut(s) 1080, 1129, 1264
EaeI YGGCCR 2 cut(s) 389, 700
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 696
Eco47I GGWCC 3 cut(s) 32, 266, 1153
Eco57I CTGAAG 2 cut(s) 930, 1322
EcoO109I RGGNCCY 3 cut(s) 32, 266, 1153
EcoRI GAATTC 1 cut(s) 1276
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 786
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 405
Esp3I CGTCTC 1 cut(s) 1175
FaqI GGGAC 3 cut(s) 113, 1100, 1166
FauI CCCGC 2 cut(s) 732, 1210
FauNDI CATATG 1 cut(s) 655
Fnu4HI GCNGC 6 cut(s) 125, 441, 848, 1143, 1324, 1329
FokI GGATG 3 cut(s) 384, 848, 1295
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 6 cut(s) 125, 441, 848, 1143, 1324, 1329
FspBI CTAG 3 cut(s) 288, 710, 1050
GlaI GCGC 1 cut(s) 1327
GluI GCNGC 6 cut(s) 125, 441, 848, 1143, 1324, 1329
HaeIII GGCC 4 cut(s) 167, 233, 391, 702
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 1157
HhaI GCGC 1 cut(s) 1328
Hin6I GCGC 1 cut(s) 1326
HinP1I GCGC 1 cut(s) 1326
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 6 cut(s) 173, 587, 748, 1210, 1313, 1349
HpaII CCGG 1 cut(s) 299
HphI GGTGA 2 cut(s) 39, 743
Hpy166II GTNNAC 5 cut(s) 9, 377, 526, 1164, 1209
Hpy188I TCNGA 8 cut(s) 178, 328, 544, 862, 910, 923, 1282, 1369
Hpy188III TCNNGA 6 cut(s) 98, 596, 967, 1100, 1300, 1346
Hpy8I GTNNAC 5 cut(s) 9, 377, 526, 1164, 1209
Hpy99I CGWCG 2 cut(s) 74, 80
HpyAV CCTTC 5 cut(s) 121, 257, 411, 905, 1297
HpyCH4III ACNGT 4 cut(s) 349, 569, 796, 1229
HpyCH4IV ACGT 1 cut(s) 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 278, 303, 847, 1032, 1188, 1334
HpyF3I CTNAG 2 cut(s) 177, 1366
HpySE526I ACGT 1 cut(s) 1160
HspAI GCGC 1 cut(s) 1326
KflI GGGWCCC 1 cut(s) 1153
Kzo9I GATC 3 cut(s) 1080, 1129, 1264
LmnI GCTCC 3 cut(s) 294, 808, 1023
Lsp1109I GCAGC 6 cut(s) 136, 427, 834, 1154, 1310, 1315
LweI GCATC 3 cut(s) 406, 793, 892
MaeI CTAG 3 cut(s) 288, 710, 1050
MaeII ACGT 1 cut(s) 1160
MaeIII GTNAC 5 cut(s) 59, 308, 354, 937, 1028
MalI GATC 3 cut(s) 1082, 1131, 1266
MboI GATC 3 cut(s) 1080, 1129, 1264
MboII GAAGA 2 cut(s) 473, 775
MflI RGATCY 2 cut(s) 1080, 1129
MhlI GDGCHC 4 cut(s) 299, 805, 951, 1166
MlsI TGGCCA 2 cut(s) 391, 702
MluCI AATT 6 cut(s) 434, 444, 776, 1005, 1134, 1276
MluI ACGCGT 1 cut(s) 1166
MluNI TGGCCA 2 cut(s) 391, 702
MlyI GAGTC 2 cut(s) 1204, 1322
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 5 cut(s) 98, 603, 624, 928, 984
Mox20I TGGCCA 2 cut(s) 391, 702
Mph1103I ATGCAT 1 cut(s) 786
MscI TGGCCA 2 cut(s) 391, 702
MseI TTAA 5 cut(s) 344, 362, 477, 825, 872
Msp20I TGGCCA 2 cut(s) 391, 702
MspA1I CMGCKG 1 cut(s) 127
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 1168
MwoI GCNNNNNNNGC 6 cut(s) 278, 303, 847, 1032, 1188, 1334
NciI CCSGG 1 cut(s) 299
NdeI CATATG 1 cut(s) 655
NdeII GATC 3 cut(s) 1080, 1129, 1264
NlaIV GGNNCC 5 cut(s) 33, 296, 635, 1154, 1155
NmuCI GTSAC 3 cut(s) 308, 354, 1028
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 5 cut(s) 252, 375, 383, 1066, 1207
PaeI GCATGC 1 cut(s) 1066
PciI ACATGT 2 cut(s) 379, 1203
PfeI GAWTC 4 cut(s) 173, 587, 748, 1349
PkrI GCNGC 6 cut(s) 126, 442, 849, 1144, 1325, 1330
PleI GAGTC 2 cut(s) 1204, 1321
PpsI GAGTC 2 cut(s) 1204, 1321
Ppu21I YACGTR 1 cut(s) 1161
PpuMI RGGWCCY 3 cut(s) 32, 266, 1153
PscI ACATGT 2 cut(s) 379, 1203
PshAI GACNNNNGTC 1 cut(s) 306
PshBI ATTAAT 1 cut(s) 477
Psp5II RGGWCCY 3 cut(s) 32, 266, 1153
PspN4I GGNNCC 5 cut(s) 33, 296, 635, 1154, 1155
PspPI GGNCC 5 cut(s) 32, 165, 232, 266, 1153
PspPPI RGGWCCY 3 cut(s) 32, 266, 1153
PstI CTGCAG 1 cut(s) 982
PsuI RGATCY 2 cut(s) 1080, 1129
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 5 cut(s) 182, 378, 932, 1202, 1341
RsaNI GTAC 5 cut(s) 181, 377, 931, 1201, 1340
SaqAI TTAA 5 cut(s) 344, 362, 477, 825, 872
SatI GCNGC 6 cut(s) 125, 441, 848, 1143, 1324, 1329
Sau3AI GATC 3 cut(s) 1080, 1129, 1264
Sau96I GGNCC 5 cut(s) 32, 165, 232, 266, 1153
SchI GAGTC 2 cut(s) 1204, 1322
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 4 cut(s) 299, 805, 951, 1166
SfaNI GCATC 3 cut(s) 406, 793, 892
SfcI CTRYAG 1 cut(s) 978
SinI GGWCC 3 cut(s) 32, 266, 1153
SmlI CTYRAG 1 cut(s) 1100
SmoI CTYRAG 1 cut(s) 1100
SphI GCATGC 1 cut(s) 1066
Sse9I AATT 6 cut(s) 434, 444, 776, 1005, 1134, 1276
SsiI CCGC 3 cut(s) 739, 1217, 1247
SspMI CTAG 3 cut(s) 288, 710, 1050
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 4 cut(s) 349, 569, 796, 1229
TaiI ACGT 1 cut(s) 1163
TaqI TCGA 6 cut(s) 78, 159, 171, 597, 1138, 1263
TasI AATT 6 cut(s) 434, 444, 776, 1005, 1134, 1276
TatI WGTACW 4 cut(s) 180, 376, 1200, 1339
TfiI GAWTC 4 cut(s) 173, 587, 748, 1349
Tru1I TTAA 5 cut(s) 344, 362, 477, 825, 872
Tru9I TTAA 5 cut(s) 344, 362, 477, 825, 872
TscAI CASTG 7 cut(s) 574, 720, 820, 849, 1033, 1189, 1360
TseFI GTSAC 3 cut(s) 308, 354, 1028
TseI GCWGC 6 cut(s) 124, 440, 847, 1142, 1323, 1328
Tsp45I GTSAC 3 cut(s) 308, 354, 1028
TspDTI ATGAA 4 cut(s) 123, 276, 672, 675
TspGWI ACGGA 1 cut(s) 788
TspRI CASTG 7 cut(s) 574, 720, 820, 849, 1033, 1189, 1360
VneI GTGCAC 1 cut(s) 1162
VpaK11BI GGWCC 3 cut(s) 32, 266, 1153
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 3 cut(s) 434, 776, 1276
XceI RCATGY 5 cut(s) 252, 375, 383, 1066, 1207
XcmI CCANNNNNNNNNTGG 1 cut(s) 1074
XspI CTAG 3 cut(s) 288, 710, 1050
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.