Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006869

Physical Location & Seq

Genomic Coordinates Reverse (-)

49227375 .. 49231424

Gene Structure 4050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0379100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGACGCAGGGGCAGGGAGCGATGGACCCTGCCGTGCTCGATGACATAATCCGACGGCTCACGGAGGTCCGATTGGCCAGGCCGGGGAAGCAGGTCCAGCTCTCCGAGTCCGAGATCAAACAGCTCTGTGTTGCTTCCAGGGAAATCTTTCTCCAGCAGCCCAATTTGCTCGAGCTTGAAGCCCCAATCAAAATTTGCGGTGACATTCATGGGCAATATAGCGACCTATTAAGGCTCTTTGAATATGGGGGCTTTCCTCCGAGTGCAAATTATCTGTTTTTAGGTGACTATGTGGATCGTGGCAAGCAGAGTTTAGAAACAATATGCCTCTTGCTCGCGTATAAAATCAAATTTCCAGAGAACTTTTTTCTTCTTAGAGGGAATCACGAATGTGCTTCTATTAATCGCATATATGGTTTTTATGATGAGTGCAAGCGCCGGTTTAATGTCAGACTTTGGAAATCCTTTACCGACAGCTTTAACTGCCTTCCTGTGGCAGCCCTTATAGATGACAAAATATTATGTATGCATGGTGGTCTTTCCCCTGATTTGACAAATTTGGATCAGATCAGGAATTTACCTCGTCCAACTGCTATTCCTGATACTGGCTTGCTTTGCGATTTGCTCTGGTCAGATCCTGGCAGAGATGTTAAGGGATGGGGAATGAATGATAGAGGAGTCTCCTATACATTTGGCCCTGATAAGGTTGCAGAATTTCTAATGAAGCATGATTTGGACCTTGTTTGTCGTGCTCATCAGGTTGTGGAGGATGGTTATGAATTCTTCGCCGACAGACAACTTGTTACAATTTTTTCAGCCCCCAACTACTGTGGTGAATTTGATAATGCTGGTGCCATGATGAGTGTGGATGAGAACCTAATGTGCTCTTTCCAGATTCTTAAGCCAGCAGAGAAAAAAGCAACAAAGTTCATGATGTCAACAAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

317

Amino Acids

35.93

Weight (kDa)

5.37

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	14 - 61	2.4e-21	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	63 - 256	1.2e-49	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07590 AT5G07590 AT5G07590 AT5G07590
fragaria_vesca	FvH4_7g26970 FvH4_7g26970 FvH4_7g26970
malus_domestica	MD01G1177500.v1.1 MD07G1249200.v1.1
prunus_persica	Prupe.2G272800_v2.0.a1 Prupe.2G272800_v2.0.a1 Prupe.2G272800_v2.0.a1
pyrus_communis	pycom01g18800 pycom07g22240
rosa_chinensis	RchiOBHm_Chr1g0373701
rosa_laevigata	RLG00000026807
rosa_multiflora	Rmu_sc0002606.1_g000002 Rmu_sc0010519.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284060
rosa_rugosa	Rorug01G0379000 Rorug01G0379100
rosa_samantha	Rh1AG388400 Rh1BG352800 Rh1CG365700 Rh1DG383200
rosa_wichuraiana	Rw1G034680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	854
AccII	CGCG	1 cut(s)	341
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	3 cut(s)	306, 573, 632
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	7 cut(s)	195, 353, 559, 577, 716, 782, 839
AfiI	CCNNNNNNNGG	4 cut(s)	87, 496, 608, 706
AflII	CTTAAG	1 cut(s)	902
AgsI	TTSAA	2 cut(s)	182, 245
AjnI	CCWGG	3 cut(s)	80, 140, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	4 cut(s)	103, 127, 178, 480
AluI	AGCT	4 cut(s)	103, 127, 178, 480
Alw21I	GWGCWC	3 cut(s)	42, 757, 890
Alw26I	GTCTC	1 cut(s)	688
AlwI	GGATC	3 cut(s)	306, 573, 632
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	3 cut(s)	78, 83, 697
ApeKI	GCWGC	2 cut(s)	160, 500
ApoI	RAATTY	7 cut(s)	195, 353, 559, 577, 716, 782, 839
AseI	ATTAAT	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	5 cut(s)	28, 70, 97, 698, 739
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	3 cut(s)	215, 299, 848
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	4 cut(s)	28, 70, 97, 739
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	854
Bbv12I	GWGCWC	3 cut(s)	42, 757, 890
BbvI	GCAGC	2 cut(s)	172, 512
BccI	CCATC	3 cut(s)	19, 654, 767
BceAI	ACGGC	2 cut(s)	20, 74
BciT130I	CCWGG	3 cut(s)	82, 142, 642
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	688
BfoI	RGCGCY	1 cut(s)	442
BfrI	CTTAAG	1 cut(s)	902
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	161, 501
BlsI	GCNGC	2 cut(s)	162, 502
Bme1390I	CCNGG	4 cut(s)	82, 87, 142, 642
Bme18I	GGWCC	4 cut(s)	28, 70, 97, 739
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	5 cut(s)	28, 70, 97, 698, 739
BmiI	GGNNCC	2 cut(s)	30, 856
BmrFI	CCNGG	4 cut(s)	82, 87, 142, 642
BpmI	CTGGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	86, 141
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 496, 608, 706
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	613
BseBI	CCWGG	3 cut(s)	82, 142, 642
BseDI	CCNNGG	2 cut(s)	86, 141
BseGI	GGATG	3 cut(s)	665, 778, 877
BseLI	CCNNNNNNNGG	4 cut(s)	87, 496, 608, 706
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	1 cut(s)	693
BseXI	GCAGC	2 cut(s)	172, 512
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	3 cut(s)	80, 85, 699
BshNI	GGYRCC	1 cut(s)	854
BsiHKAI	GWGCWC	3 cut(s)	42, 757, 890
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	86, 442
BslI	CCNNNNNNNGG	4 cut(s)	87, 496, 608, 706
BsmAI	GTCTC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	80, 85, 699
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	42, 757, 890
Bsp143I	GATC	5 cut(s)	117, 298, 565, 570, 637
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	80, 85, 699
BspFNI	CGCG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	933
BspLI	GGNNCC	2 cut(s)	30, 856
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	3 cut(s)	306, 573, 632
BspT107I	GGYRCC	1 cut(s)	854
BspTI	CTTAAG	1 cut(s)	902
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	86, 141
BssMI	GATC	5 cut(s)	117, 298, 565, 570, 637
Bst2UI	CCWGG	3 cut(s)	82, 142, 642
Bst4CI	ACNGT	1 cut(s)	833
BstAFI	CTTAAG	1 cut(s)	902
BstC8I	GCNNGC	5 cut(s)	308, 339, 437, 614, 909
BstDEI	CTNAG	1 cut(s)	377
BstF5I	GGATG	3 cut(s)	665, 778, 877
BstFNI	CGCG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	5 cut(s)	120, 301, 568, 573, 640
BstMAI	GTCTC	1 cut(s)	688
BstMBI	GATC	5 cut(s)	117, 298, 565, 570, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 100, 169, 486, 618
BstNI	CCWGG	3 cut(s)	82, 142, 642
BstSCI	CCNGG	4 cut(s)	80, 85, 140, 640
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	172, 512
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	3 cut(s)	80, 85, 699
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	665, 778, 877
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	5 cut(s)	308, 339, 437, 614, 909
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	933
CfoI	GCGC	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	5 cut(s)	28, 70, 97, 698, 739
CseI	GACGC	1 cut(s)	16
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviAII	CATG	5 cut(s)	212, 533, 731, 859, 934
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	5 cut(s)	119, 300, 567, 572, 639
DpnII	GATC	5 cut(s)	117, 298, 565, 570, 637
EaeI	YGGCCR	1 cut(s)	78
Eco47I	GGWCC	4 cut(s)	28, 70, 97, 739
Eco88I	CYCGRG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	3 cut(s)	80, 140, 640
EcoT22I	ATGCAT	1 cut(s)	534
FaeI	CATG	5 cut(s)	215, 536, 734, 862, 937
FatI	CATG	5 cut(s)	211, 532, 730, 858, 933
Fnu4HI	GCNGC	2 cut(s)	161, 501
FokI	GGATG	3 cut(s)	672, 785, 884
Fsp4HI	GCNGC	2 cut(s)	161, 501
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	2 cut(s)	161, 501
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	442
HaeIII	GGCC	3 cut(s)	80, 85, 699
HapII	CCGG	2 cut(s)	86, 442
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	441
Hin1II	CATG	5 cut(s)	215, 536, 734, 862, 937
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HincII	GTYRAC	1 cut(s)	942
HindII	GTYRAC	1 cut(s)	942
HinfI	GANTC	4 cut(s)	110, 385, 681, 898
HpaII	CCGG	2 cut(s)	86, 442
HphI	GGTGA	3 cut(s)	215, 299, 848
Hpy166II	GTNNAC	1 cut(s)	942
Hpy188I	TCNGA	8 cut(s)	56, 74, 109, 115, 264, 455, 570, 637
Hpy188III	TCNNGA	6 cut(s)	359, 389, 574, 602, 895, 934
Hpy8I	GTNNAC	1 cut(s)	942
Hpy99I	CGWCG	2 cut(s)	10, 60
HpyAV	CCTTC	1 cut(s)	500
HpyCH4III	ACNGT	1 cut(s)	833
HpyCH4V	TGCA	4 cut(s)	269, 435, 532, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 100, 169, 486, 618
HpyF3I	CTNAG	1 cut(s)	377
Hsp92II	CATG	5 cut(s)	215, 536, 734, 862, 937
HspAI	GCGC	1 cut(s)	439
Kzo9I	GATC	5 cut(s)	117, 298, 565, 570, 637
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	2 cut(s)	172, 512
MaeIII	GTNAC	3 cut(s)	203, 287, 805
MalI	GATC	5 cut(s)	119, 300, 567, 572, 639
MboI	GATC	5 cut(s)	117, 298, 565, 570, 637
MboII	GAAGA	2 cut(s)	365, 778
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	3 cut(s)	42, 757, 890
MlsI	TGGCCA	1 cut(s)	80
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	119, 690
MmeI	TCCRAC	2 cut(s)	79, 614
MnlI	CCTC	7 cut(s)	61, 270, 341, 374, 594, 671, 763
Mox20I	TGGCCA	1 cut(s)	80
Mph1103I	ATGCAT	1 cut(s)	534
MroXI	GAANNNNTTC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	6 cut(s)	233, 405, 447, 483, 654, 903
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	902
MspI	CCGG	2 cut(s)	86, 442
MspR9I	CCNGG	4 cut(s)	82, 87, 142, 642
MvaI	CCWGG	3 cut(s)	82, 142, 642
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	5 cut(s)	91, 100, 169, 486, 618
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	5 cut(s)	117, 298, 565, 570, 637
NlaIII	CATG	5 cut(s)	215, 536, 734, 862, 937
NlaIV	GGNNCC	2 cut(s)	30, 856
NmuCI	GTSAC	2 cut(s)	203, 287
NsiI	ATGCAT	1 cut(s)	534
OliI	CACNNNNGTG	1 cut(s)	393
PaeR7I	CTCGAG	1 cut(s)	173
PagI	TCATGA	1 cut(s)	933
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	385, 898
PkrI	GCNGC	2 cut(s)	162, 502
PleI	GAGTC	2 cut(s)	118, 689
PpsI	GAGTC	2 cut(s)	118, 689
PshBI	ATTAAT	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	80, 140, 640
PspGI	CCWGG	3 cut(s)	80, 140, 640
PspN4I	GGNNCC	2 cut(s)	30, 856
PspPI	GGNCC	5 cut(s)	28, 70, 97, 698, 739
PspXI	VCTCGAGB	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	6 cut(s)	233, 405, 447, 483, 654, 903
SatI	GCNGC	2 cut(s)	161, 501
Sau3AI	GATC	5 cut(s)	117, 298, 565, 570, 637
Sau96I	GGNCC	5 cut(s)	28, 70, 97, 698, 739
SchI	GAGTC	2 cut(s)	119, 690
ScrFI	CCNGG	4 cut(s)	82, 87, 142, 642
SduI	GDGCHC	3 cut(s)	42, 757, 890
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	4 cut(s)	28, 70, 97, 739
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	173, 902
SmoI	CTYRAG	2 cut(s)	173, 902
SsiI	CCGC	1 cut(s)	201
SspI	AATATT	1 cut(s)	522
StyD4I	CCNGG	4 cut(s)	80, 85, 140, 640
TaaI	ACNGT	1 cut(s)	833
TaqI	TCGA	2 cut(s)	42, 174
TfiI	GAWTC	2 cut(s)	385, 898
Tru1I	TTAA	6 cut(s)	233, 405, 447, 483, 654, 903
Tru9I	TTAA	6 cut(s)	233, 405, 447, 483, 654, 903
TseFI	GTSAC	2 cut(s)	203, 287
TseI	GCWGC	2 cut(s)	160, 500
Tsp45I	GTSAC	2 cut(s)	203, 287
TspDTI	ATGAA	5 cut(s)	200, 683, 740, 795, 922
TspGWI	ACGGA	1 cut(s)	80
Vha464I	CTTAAG	1 cut(s)	902
VpaK11BI	GGWCC	4 cut(s)	28, 70, 97, 739
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	7 cut(s)	195, 353, 559, 577, 716, 782, 839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865
XhoI	CTCGAG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.