Rh1CG365700

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006869
Physical Location & Seq
Reverse (-)
63732969 .. 63737153
4185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG365700.1

Sequence Viewer

Length: 1272 bp
ATGCAGGTTGTGCAGTTGTTCTCATGCTTGGACAAGATAAGCTACATTGAATGGGCTCTTGATTCTGAGTACATTCTTTGTGGTCTATATAAAAGACCAATGATACAGGCATGGTCGCTGGCCCAACCTGAATGGACATGCAAGATAGATGAAGGTCCTGCCGGCATTGCTTATGCTAGGTGGAGCCCAGATAGCCGTCACATACTTACCACATCAGACTTCCAACTGCGTTTAACAGTTTGGTCTCTCTTAAACACAGCATGTGTACATGTGCAATGGCCTAAGCATCTTTCGAAGGGGGTTTCTTTCACCAAAGATGGGAAATTTGCTGCAATTTGCACGAGGCGCGATTGCAAGGATTATATTAATCTTCTGTCTTGTCAAACTTGGGAAATAATGGGTGTATTTGCTGTTGACACAGTGGACTTGGCTGATACTGAATGGTCACCTGATGACAGTGCAATAGTGATATGGGATTCTTCTCTTGAATATAAGGTTCTGATATACTCCCCAGATGGGAGGTGCCTATTTAAGTATCAAGCATATGAAAGTGGATTGGGGGTAAAAAGTGTTTCATGGTCTCCCTGTGGCCAGTTTCTAGCAGTGGGTAGTTATGATCAGATGTTGCGGGTCTTGAATCACCTGACATGGAAGACTTTTGCAGAATTTATGCATCTATCTACTGTTCGTGCTCCCTGTTGTGCTGCTGTCTTCAAGGAAGTAGATGAGCCGCTGCTACTCAATATGTCGGAGTTATGCTTAACTGATGATTTTGCACCTGAAAATAATGAAGATGCTTCAGAAGGACACGTCAGAGTTAGGTACGAGGTAACAGAAGTGCCCATCACTTTGCCTTTTCAGAAGCCTCCTGGTGACAAACCTAACCCAAAACAAGGAATTGGTCTACTGGCATGGAGCAACGATAGCCAATATATTTGTACTCGCAACGACAGCATGCCATGTATTCTCTGGATATGGGACATCCGCCATCTTGAACTAGCAGCTATCTTGGTGCAGAAAGATCCTATCCGAGCAGCAGTTTGGGACCCTACGTGTACACGTCTTGTTGTTTGCACCGGAAGTTCTCATCTGTACATGTGGACTCCTGGAGGTGCTTATTGTGTGAGTATCCCACTACCACAGTTCAGCATACTTGATCTGAAATGGAATTCAGATGGAAGCTGTCTTTTCCTGAAGGACAAAGAGTCATTTTGCTGCGCTGCTGTTGCCGTGCTTCCAGAGGAATCAAGTGACTATAGCTCCGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

423

Amino Acids

47.78

Weight (kDa)

4.86

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 12 - 226 1.2e-13 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 522
AccI GTMKAC 1 cut(s) 904
AccII CGCG 1 cut(s) 348
AciI CCGC 3 cut(s) 628, 731, 985
AclWI GGATC 1 cut(s) 1016
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 3 cut(s) 323, 665, 1168
AcuI CTGAAG 2 cut(s) 783, 1214
AfaI GTAC 6 cut(s) 71, 267, 824, 940, 1057, 1094
AfiI CCNNNNNNNGG 3 cut(s) 318, 516, 893
AflIII ACRYGT 5 cut(s) 268, 808, 1052, 1058, 1095
AgsI TTSAA 5 cut(s) 50, 488, 637, 715, 995
AhdI GACNNNNNGTC 1 cut(s) 1204
AjiI CACGTC 2 cut(s) 811, 1061
AjnI CCWGG 2 cut(s) 868, 1105
AluBI AGCT 4 cut(s) 42, 1004, 1182, 1260
AluI AGCT 4 cut(s) 42, 1004, 1182, 1260
Alw21I GWGCWC 1 cut(s) 694
Alw26I GTCTC 2 cut(s) 249, 585
AlwI GGATC 1 cut(s) 1016
AoxI GGCC 3 cut(s) 120, 278, 589
ApeKI GCWGC 7 cut(s) 329, 704, 733, 1001, 1034, 1215, 1220
ApoI RAATTY 3 cut(s) 323, 665, 1168
AseI ATTAAT 1 cut(s) 366
AspLEI GCGC 2 cut(s) 348, 1220
AspS9I GGNCC 3 cut(s) 121, 155, 1045
AsuHPI GGTGA 4 cut(s) 301, 438, 632, 884
AsuII TTCGAA 1 cut(s) 293
AvaII GGWCC 2 cut(s) 155, 1045
BaeGI GKGCMC 1 cut(s) 843
BalI TGGCCA 1 cut(s) 591
BanI GGYRCC 1 cut(s) 522
BanII GRGCYC 2 cut(s) 58, 188
BauI CACGAG 1 cut(s) 340
BbsI GAAGAC 2 cut(s) 659, 703
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 7 cut(s) 316, 691, 720, 1013, 1046, 1202, 1207
BccI CCATC 5 cut(s) 311, 509, 851, 996, 1169
BceAI ACGGC 2 cut(s) 180, 1214
BciT130I CCWGG 2 cut(s) 870, 1107
BciVI GTATCC 1 cut(s) 1139
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 2 cut(s) 249, 585
BfaI CTAG 3 cut(s) 177, 599, 998
BfmI CTRYAG 1 cut(s) 1255
BfuI GTATCC 1 cut(s) 1139
BisI GCNGC 8 cut(s) 330, 705, 731, 734, 1002, 1035, 1216, 1221
BlsI GCNGC 8 cut(s) 331, 706, 732, 735, 1003, 1036, 1217, 1222
Bme1390I CCNGG 2 cut(s) 870, 1107
Bme18I GGWCC 2 cut(s) 155, 1045
BmeRI GACNNNNNGTC 1 cut(s) 1204
BmgBI CACGTC 2 cut(s) 811, 1061
BmgT120I GGNCC 3 cut(s) 121, 155, 1045
BmiI GGNNCC 4 cut(s) 185, 524, 1046, 1047
BmrFI CCNGG 2 cut(s) 870, 1107
BmsI GCATC 3 cut(s) 295, 682, 784
BpiI GAAGAC 2 cut(s) 659, 703
BpmI CTGGAG 1 cut(s) 1128
Bpu10I CCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 293
BsaAI YACGTR 1 cut(s) 1053
BsaI GGTCTC 2 cut(s) 249, 585
BsaWI WCCGGW 1 cut(s) 1076
BsaXI ACNNNNNCTCC 1 cut(s) 1244
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 516, 893
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 592, 912
Bse3DI GCAATG 2 cut(s) 165, 281
BseBI CCWGG 2 cut(s) 870, 1107
BseGI GGATG 1 cut(s) 981
BseLI CCNNNNNNNGG 3 cut(s) 318, 516, 893
BseMI GCAATG 2 cut(s) 165, 281
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 592, 912
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 7 cut(s) 316, 691, 720, 1013, 1046, 1202, 1207
BsgI GTGCAG 2 cut(s) 32, 1034
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 3 cut(s) 122, 280, 591
BshNI GGYRCC 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 694
BsiSI CCGG 2 cut(s) 162, 1077
BslFI GGGAC 2 cut(s) 992, 1058
BslI CCNNNNNNNGG 3 cut(s) 318, 516, 893
BsmAI GTCTC 2 cut(s) 249, 585
BsmFI GGGAC 2 cut(s) 992, 1058
BsnI GGCC 3 cut(s) 122, 280, 591
Bso31I GGTCTC 2 cut(s) 249, 585
Bsp119I TTCGAA 1 cut(s) 293
Bsp1286I GDGCHC 4 cut(s) 58, 188, 694, 843
Bsp1407I TGTACA 3 cut(s) 265, 1055, 1092
Bsp143I GATC 3 cut(s) 616, 1021, 1156
BspACI CCGC 3 cut(s) 628, 731, 985
BspANI GGCC 3 cut(s) 122, 280, 591
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 4 cut(s) 185, 524, 1046, 1047
BspPI GGATC 1 cut(s) 1016
BspT104I TTCGAA 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 522
BspTNI GGTCTC 2 cut(s) 249, 585
BsrDI GCAATG 2 cut(s) 165, 281
BsrFI RCCGGY 1 cut(s) 161
BsrGI TGTACA 3 cut(s) 265, 1055, 1092
BsrI ACTGG 2 cut(s) 592, 912
BssAI RCCGGY 1 cut(s) 161
BssMI GATC 3 cut(s) 616, 1021, 1156
BssSI CACGAG 1 cut(s) 340
Bst2BI CACGAG 1 cut(s) 340
Bst2UI CCWGG 2 cut(s) 870, 1107
Bst4CI ACNGT 5 cut(s) 238, 421, 458, 685, 1143
BstAPI GCANNNNNTGC 1 cut(s) 10
BstAUI TGTACA 3 cut(s) 265, 1055, 1092
BstBAI YACGTR 1 cut(s) 1053
BstBI TTCGAA 1 cut(s) 293
BstC8I GCNNGC 3 cut(s) 120, 163, 956
BstDEI CTNAG 2 cut(s) 66, 282
BstEII GGTNACC 1 cut(s) 444
BstF5I GGATG 1 cut(s) 981
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 2 cut(s) 348, 1220
BstKTI GATC 3 cut(s) 619, 1024, 1159
BstMAI GTCTC 2 cut(s) 249, 585
BstMBI GATC 3 cut(s) 616, 1021, 1156
BstMWI GCNNNNNNNGC 7 cut(s) 10, 167, 192, 345, 924, 951, 1226
BstNI CCWGG 2 cut(s) 870, 1107
BstNSI RCATGY 5 cut(s) 141, 264, 272, 958, 1099
BstPI GGTNACC 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 868, 1105
BstSFI CTRYAG 1 cut(s) 1255
BstSLI GKGCMC 1 cut(s) 843
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 7 cut(s) 316, 691, 720, 1013, 1046, 1202, 1207
BstV2I GAAGAC 2 cut(s) 659, 703
BstX2I RGATCY 1 cut(s) 1021
BstYI RGATCY 1 cut(s) 1021
BsuI GTATCC 1 cut(s) 1139
BsuRI GGCC 3 cut(s) 122, 280, 591
BtrI CACGTC 2 cut(s) 811, 1061
BtsCI GGATG 1 cut(s) 981
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 3 cut(s) 426, 463, 609
Cac8I GCNNGC 3 cut(s) 120, 163, 956
CfoI GCGC 2 cut(s) 348, 1220
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 3 cut(s) 121, 155, 1045
Csp6I GTAC 6 cut(s) 70, 266, 823, 939, 1056, 1093
CviQI GTAC 6 cut(s) 70, 266, 823, 939, 1056, 1093
DdeI CTNAG 2 cut(s) 66, 282
DpnI GATC 3 cut(s) 618, 1023, 1158
DpnII GATC 3 cut(s) 616, 1021, 1156
DriI GACNNNNNGTC 1 cut(s) 1204
EaeI YGGCCR 1 cut(s) 589
Eam1105I GACNNNNNGTC 1 cut(s) 1204
EciI GGCGGA 1 cut(s) 974
Eco24I GRGCYC 2 cut(s) 58, 188
Eco31I GGTCTC 2 cut(s) 249, 585
Eco47I GGWCC 2 cut(s) 155, 1045
Eco57I CTGAAG 2 cut(s) 783, 1214
Eco91I GGTNACC 1 cut(s) 444
EcoO109I RGGNCCY 2 cut(s) 155, 1045
EcoO65I GGTNACC 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 1168
EcoRII CCWGG 2 cut(s) 868, 1105
EcoT22I ATGCAT 1 cut(s) 675
EcoT38I GRGCYC 2 cut(s) 58, 188
FaqI GGGAC 2 cut(s) 992, 1058
FauI CCCGC 1 cut(s) 621
FauNDI CATATG 1 cut(s) 544
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 904
Fnu4HI GCNGC 8 cut(s) 330, 705, 731, 734, 1002, 1035, 1216, 1221
FokI GGATG 1 cut(s) 968
FriOI GRGCYC 2 cut(s) 58, 188
Fsp4HI GCNGC 8 cut(s) 330, 705, 731, 734, 1002, 1035, 1216, 1221
FspBI CTAG 3 cut(s) 177, 599, 998
GlaI GCGC 2 cut(s) 347, 1219
GluI GCNGC 8 cut(s) 330, 705, 731, 734, 1002, 1035, 1216, 1221
GsuI CTGGAG 1 cut(s) 1128
HaeIII GGCC 3 cut(s) 122, 280, 591
HapII CCGG 2 cut(s) 162, 1077
HhaI GCGC 2 cut(s) 348, 1220
Hin6I GCGC 2 cut(s) 346, 1218
HinP1I GCGC 2 cut(s) 346, 1218
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 6 cut(s) 62, 476, 637, 1102, 1205, 1244
HpaII CCGG 2 cut(s) 162, 1077
HphI GGTGA 4 cut(s) 301, 438, 632, 884
Hpy166II GTNNAC 7 cut(s) 266, 415, 424, 905, 1056, 1058, 1101
Hpy188III TCNNGA 7 cut(s) 59, 485, 634, 970, 992, 1192, 1238
Hpy8I GTNNAC 7 cut(s) 266, 415, 424, 905, 1056, 1058, 1101
HpyAV CCTTC 4 cut(s) 146, 289, 797, 1189
HpyCH4III ACNGT 5 cut(s) 238, 421, 458, 685, 1143
HpyCH4IV ACGT 3 cut(s) 810, 1052, 1060
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 167, 192, 345, 924, 951, 1226
HpyF3I CTNAG 2 cut(s) 66, 282
HpySE526I ACGT 3 cut(s) 810, 1052, 1060
HspAI GCGC 2 cut(s) 346, 1218
KflI GGGWCCC 1 cut(s) 1045
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 3 cut(s) 616, 1021, 1156
LmnI GCTCC 4 cut(s) 183, 697, 915, 1265
Lsp1109I GCAGC 7 cut(s) 316, 691, 720, 1013, 1046, 1202, 1207
LweI GCATC 3 cut(s) 295, 682, 784
MaeI CTAG 3 cut(s) 177, 599, 998
MaeII ACGT 3 cut(s) 810, 1052, 1060
MaeIII GTNAC 5 cut(s) 197, 444, 829, 872, 1250
MalI GATC 3 cut(s) 618, 1023, 1158
MboI GATC 3 cut(s) 616, 1021, 1156
MboII GAAGA 5 cut(s) 362, 471, 664, 703, 803
MflI RGATCY 1 cut(s) 1021
MhlI GDGCHC 4 cut(s) 58, 188, 694, 843
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 5 cut(s) 323, 333, 665, 897, 1168
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 2 cut(s) 1096, 1214
MmeI TCCRAC 2 cut(s) 247, 729
MnlI CCTC 6 cut(s) 336, 513, 820, 876, 1103, 1234
Mox20I TGGCCA 1 cut(s) 591
Mph1103I ATGCAT 1 cut(s) 675
MroNI GCCGGC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 591
MseI TTAA 5 cut(s) 233, 251, 366, 531, 761
Msp20I TGGCCA 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 733
MspI CCGG 2 cut(s) 162, 1077
MspR9I CCNGG 2 cut(s) 870, 1107
MvaI CCWGG 2 cut(s) 870, 1107
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 7 cut(s) 10, 167, 192, 345, 924, 951, 1226
NaeI GCCGGC 1 cut(s) 163
NdeI CATATG 1 cut(s) 544
NdeII GATC 3 cut(s) 616, 1021, 1156
NgoMIV GCCGGC 1 cut(s) 161
NlaIV GGNNCC 4 cut(s) 185, 524, 1046, 1047
NmuCI GTSAC 4 cut(s) 197, 444, 872, 1250
NsiI ATGCAT 1 cut(s) 675
NspI RCATGY 5 cut(s) 141, 264, 272, 958, 1099
NspV TTCGAA 1 cut(s) 293
PaeI GCATGC 1 cut(s) 958
PciI ACATGT 2 cut(s) 268, 1095
PdiI GCCGGC 1 cut(s) 163
PfeI GAWTC 4 cut(s) 62, 476, 637, 1244
PfoI TCCNGGA 1 cut(s) 1105
PkrI GCNGC 8 cut(s) 331, 706, 732, 735, 1003, 1036, 1217, 1222
PleI GAGTC 2 cut(s) 1096, 1213
PpsI GAGTC 2 cut(s) 1096, 1213
Ppu21I YACGTR 1 cut(s) 1053
PpuMI RGGWCCY 2 cut(s) 155, 1045
PscI ACATGT 2 cut(s) 268, 1095
PshBI ATTAAT 1 cut(s) 366
Psp5II RGGWCCY 2 cut(s) 155, 1045
Psp6I CCWGG 2 cut(s) 868, 1105
PspEI GGTNACC 1 cut(s) 444
PspGI CCWGG 2 cut(s) 868, 1105
PspN4I GGNNCC 4 cut(s) 185, 524, 1046, 1047
PspPI GGNCC 3 cut(s) 121, 155, 1045
PspPPI RGGWCCY 2 cut(s) 155, 1045
PsuI RGATCY 1 cut(s) 1021
RsaI GTAC 6 cut(s) 71, 267, 824, 940, 1057, 1094
RsaNI GTAC 6 cut(s) 70, 266, 823, 939, 1056, 1093
SaqAI TTAA 5 cut(s) 233, 251, 366, 531, 761
SatI GCNGC 8 cut(s) 330, 705, 731, 734, 1002, 1035, 1216, 1221
Sau3AI GATC 3 cut(s) 616, 1021, 1156
Sau96I GGNCC 3 cut(s) 121, 155, 1045
SchI GAGTC 2 cut(s) 1096, 1214
ScrFI CCNGG 2 cut(s) 870, 1107
SduI GDGCHC 4 cut(s) 58, 188, 694, 843
SfaNI GCATC 3 cut(s) 295, 682, 784
SfcI CTRYAG 1 cut(s) 1255
SfuI TTCGAA 1 cut(s) 293
SinI GGWCC 2 cut(s) 155, 1045
SphI GCATGC 1 cut(s) 958
Sse9I AATT 5 cut(s) 323, 333, 665, 897, 1168
SsiI CCGC 3 cut(s) 628, 731, 985
SspMI CTAG 3 cut(s) 177, 599, 998
StyD4I CCNGG 2 cut(s) 868, 1105
TaaI ACNGT 5 cut(s) 238, 421, 458, 685, 1143
TaiI ACGT 3 cut(s) 813, 1055, 1063
TaqI TCGA 1 cut(s) 293
TasI AATT 5 cut(s) 323, 333, 665, 897, 1168
TatI WGTACW 5 cut(s) 69, 265, 938, 1055, 1092
TauI GCSGC 1 cut(s) 733
TfiI GAWTC 4 cut(s) 62, 476, 637, 1244
Tru1I TTAA 5 cut(s) 233, 251, 366, 531, 761
Tru9I TTAA 5 cut(s) 233, 251, 366, 531, 761
TscAI CASTG 3 cut(s) 426, 463, 609
TseFI GTSAC 4 cut(s) 197, 444, 872, 1250
TseI GCWGC 7 cut(s) 329, 704, 733, 1001, 1034, 1215, 1220
Tsp45I GTSAC 4 cut(s) 197, 444, 872, 1250
TspDTI ATGAA 4 cut(s) 165, 561, 564, 804
TspRI CASTG 3 cut(s) 426, 463, 609
VpaK11BI GGWCC 2 cut(s) 155, 1045
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 3 cut(s) 323, 665, 1168
XceI RCATGY 5 cut(s) 141, 264, 272, 958, 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 966
XmiI GTMKAC 1 cut(s) 904
XspI CTAG 3 cut(s) 177, 599, 998
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.