pycom07g22240

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
23651987 .. 23655256
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g22240.4

Sequence Viewer

Length: 1374 bp
ATGGAGTTTACAGAGGCTTACAAGCAGACCGGTCCTTGTTGCTTCTCGCCTAATGCTCGCTACATTGCCGTCGCCGTCGACTACCGCCTTGTCATTCGCGACACTCTTTCCTTTAAGGTTGTGCAGTTGTTTTCATGTTTGGATAAGATAAGCTATATCGAATGGGCGCTTGATTCTGAATACATTCTTTGTGGTCTATATAAAAGACCAATGATACAAGCGTGGTCGCTGGCCCAACCTGAATGGACATGCAAGATAGATGAAGGTCCTGCCGGTATTGCCTATGCTAGGTGGAGCCCAGATAGCCGTCACATACTTACCACATCAGACTTCCAACTGCGGTTAACAGTTTGGTCGCTGTTAAACACAGCATGTGTACATGTGCAATGGCCAAAGCATCCTTCCAAGGGAGTTTCTTTTACCAAAGATGGGCAATTTGCTGCAATTTGCACAAGGCGTGATTGCAAGGACTATATTAATCTTCTATCCTGTCATACATGGGAAATAATGGGTGTATTTGCTGTGGACACATTGGACTTGGCCGATATTGAATGGTCACCAGATGACAGTGCAATCGTGATATGGGATTCGCCTCTAGAATATAAGGTTCTAATATACTCGCCAGATGGGAGGTGCCTATATAAGTATCAAGCATACGAAAGTGCATTGGGCGTAAAAAGTGTTTCATGGTCTCCATGTGGCCAATTTCTAGCAGTGGGTAGTTATGACCAGATGTTGCGGGTTTTGAATCACTTGACTTGGAAGACTTTTGCTGAATTTATGCATCTATCTACTGTCCGTGCTCCCTGCTGTGCTGCCGTGTTTAAGGAAGTAGATGAGCCACTGCTACTTGATATGTCTGAGCTAAGTATAAGTGATGATTTTGCAGAAGGCAATAATGATGAAGGACACATCAGAGTCAGATACGAAGTTACAGAAATGCCCATCAATTTGCCTTTTCAGAAGCCTCCTGTAGACAAGCCTAACCCCAAACAGGGAATTGGTCTAATGTCATGGAGCAACAATAGCCAATATATCTGTACCCGCAATGATAGCATGCCAAGCATTCTCTGGATATGGGACATACGCCATCTTGAACTCGCTGCTATCTTGGTGCAGAAGGATCCTATTCGTGCAGCAGTTTGGGATCCTACGTGCACTCGTCTTGTTGTTTGCACTGGAAGTTCTCATCTGTACATGTGGACTCCTGGTGGTGCCTACTGTGTGAGCATCCCGCCGCAACCACAGTTTAGCATAGTTGATCTAAAATGGAATTCAGATGGAAGCTGTCTTCTCCTGAAGGATAAAGAGTTGTTTTGCTGCGCTGCTGTTGCCGTTCTTCCTGAATCGAGTGAATATAGCTCGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

51.8

Weight (kDa)

5.03

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 633, 1214
AccI GTMKAC 2 cut(s) 78, 975
AccII CGCG 1 cut(s) 99
AciI CCGC 6 cut(s) 85, 340, 739, 1045, 1235, 1238
AclWI GGATC 4 cut(s) 1118, 1131, 1142, 1155
AcoI YGGCCR 3 cut(s) 389, 540, 700
AcsI RAATTY 2 cut(s) 776, 1273
AcuI CTGAAG 1 cut(s) 1319
AfaI GTAC 3 cut(s) 378, 1042, 1196
AfiI CCNNNNNNNGG 5 cut(s) 288, 407, 429, 994, 995
AflIII ACRYGT 2 cut(s) 379, 1197
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 3 cut(s) 551, 748, 1097
AjnI CCWGG 1 cut(s) 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 385, 417
AluBI AGCT 4 cut(s) 153, 865, 1287, 1362
AluI AGCT 4 cut(s) 153, 865, 1287, 1362
Alw21I GWGCWC 2 cut(s) 805, 1160
Alw26I GTCTC 1 cut(s) 696
Alw44I GTGCAC 1 cut(s) 1156
AlwI GGATC 4 cut(s) 1118, 1131, 1142, 1155
AoxI GGCC 4 cut(s) 231, 389, 540, 700
ApaLI GTGCAC 1 cut(s) 1156
ApeKI GCWGC 6 cut(s) 440, 815, 1103, 1136, 1320, 1325
ApoI RAATTY 2 cut(s) 776, 1273
AseI ATTAAT 1 cut(s) 477
AsiGI ACCGGT 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 2 cut(s) 169, 1325
AspS9I GGNCC 3 cut(s) 32, 232, 266
AsuHPI GGTGA 1 cut(s) 549
AvaII GGWCC 2 cut(s) 32, 266
BaeGI GKGCMC 1 cut(s) 1160
BaeI ACNNNNGTAYC 2 cut(s) 206, 239
BalI TGGCCA 2 cut(s) 391, 702
BamHI GGATCC 2 cut(s) 1123, 1147
BanI GGYRCC 2 cut(s) 633, 1214
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 2 cut(s) 770, 1283
Bbv12I GWGCWC 2 cut(s) 805, 1160
BbvI GCAGC 6 cut(s) 427, 802, 1090, 1148, 1307, 1312
BccI CCATC 5 cut(s) 422, 620, 953, 1098, 1274
BceAI ACGGC 5 cut(s) 53, 59, 291, 803, 1319
BciT130I CCWGG 1 cut(s) 1209
BcoDI GTCTC 1 cut(s) 696
BfaI CTAG 3 cut(s) 288, 596, 710
BfmI CTRYAG 1 cut(s) 972
BfoI RGCGCY 1 cut(s) 170
BisI GCNGC 7 cut(s) 441, 816, 1104, 1137, 1238, 1321, 1326
BlsI GCNGC 7 cut(s) 442, 817, 1105, 1138, 1239, 1322, 1327
Bme1390I CCNGG 1 cut(s) 1209
Bme18I GGWCC 2 cut(s) 32, 266
BmgT120I GGNCC 3 cut(s) 32, 232, 266
BmiI GGNNCC 5 cut(s) 296, 635, 1125, 1149, 1216
BmrFI CCNGG 1 cut(s) 1209
BmsI GCATC 3 cut(s) 406, 793, 1239
BpiI GAAGAC 2 cut(s) 770, 1283
BsaAI YACGTR 1 cut(s) 1155
BsaI GGTCTC 1 cut(s) 696
BsaJI CCNNGG 1 cut(s) 405
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 5 cut(s) 288, 407, 429, 994, 995
Bse118I RCCGGY 2 cut(s) 29, 272
Bse1I ACTGG 1 cut(s) 1183
Bse3DI GCAATG 3 cut(s) 63, 392, 1054
BseBI CCWGG 1 cut(s) 1209
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 3 cut(s) 397, 1230, 1372
BseLI CCNNNNNNNGG 5 cut(s) 288, 407, 429, 994, 995
BseMI GCAATG 3 cut(s) 63, 392, 1054
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 1 cut(s) 1183
BseSI GKGCMC 1 cut(s) 1160
BseXI GCAGC 6 cut(s) 427, 802, 1090, 1148, 1307, 1312
BsgI GTGCAG 3 cut(s) 143, 1136, 1155
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 4 cut(s) 233, 391, 542, 702
BshNI GGYRCC 2 cut(s) 633, 1214
BshTI ACCGGT 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 805, 1160
BsiSI CCGG 2 cut(s) 30, 273
BslFI GGGAC 1 cut(s) 1094
BslI CCNNNNNNNGG 5 cut(s) 288, 407, 429, 994, 995
BsmAI GTCTC 1 cut(s) 696
BsmFI GGGAC 1 cut(s) 1094
BsmI GAATGC 1 cut(s) 1065
BsnI GGCC 4 cut(s) 233, 391, 542, 702
Bso31I GGTCTC 1 cut(s) 696
Bsp1286I GDGCHC 3 cut(s) 299, 805, 1160
Bsp1407I TGTACA 2 cut(s) 376, 1194
Bsp143I GATC 3 cut(s) 1123, 1147, 1261
Bsp68I TCGCGA 1 cut(s) 99
BspACI CCGC 6 cut(s) 85, 340, 739, 1045, 1235, 1238
BspANI GGCC 4 cut(s) 233, 391, 542, 702
BspCNI CTCAG 1 cut(s) 853
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 5 cut(s) 296, 635, 1125, 1149, 1216
BspPI GGATC 4 cut(s) 1118, 1131, 1142, 1155
BspT107I GGYRCC 2 cut(s) 633, 1214
BspTNI GGTCTC 1 cut(s) 696
BsrDI GCAATG 3 cut(s) 63, 392, 1054
BsrFI RCCGGY 2 cut(s) 29, 272
BsrGI TGTACA 2 cut(s) 376, 1194
BsrI ACTGG 1 cut(s) 1183
BssAI RCCGGY 2 cut(s) 29, 272
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 3 cut(s) 1123, 1147, 1261
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 1209
Bst4CI ACNGT 5 cut(s) 349, 569, 796, 1223, 1248
BstAUI TGTACA 2 cut(s) 376, 1194
BstBAI YACGTR 1 cut(s) 1155
BstC8I GCNNGC 3 cut(s) 58, 231, 1058
BstDEI CTNAG 2 cut(s) 861, 866
BstEII GGTNACC 1 cut(s) 555
BstENI CCTNNNNNAGG 1 cut(s) 286
BstF5I GGATG 3 cut(s) 397, 1230, 1372
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 2 cut(s) 169, 1325
BstKTI GATC 3 cut(s) 1126, 1150, 1264
BstMAI GTCTC 1 cut(s) 696
BstMBI GATC 3 cut(s) 1123, 1147, 1261
BstMWI GCNNNNNNNGC 6 cut(s) 278, 303, 1026, 1053, 1062, 1331
BstNI CCWGG 1 cut(s) 1209
BstNSI RCATGY 5 cut(s) 252, 375, 383, 1060, 1201
BstPI GGTNACC 1 cut(s) 555
BstSCI CCNGG 1 cut(s) 1207
BstSFI CTRYAG 1 cut(s) 972
BstSLI GKGCMC 1 cut(s) 1160
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 6 cut(s) 427, 802, 1090, 1148, 1307, 1312
BstV2I GAAGAC 2 cut(s) 770, 1283
BstX2I RGATCY 2 cut(s) 1123, 1147
BstYI RGATCY 2 cut(s) 1123, 1147
BsuRI GGCC 4 cut(s) 233, 391, 542, 702
BtsCI GGATG 3 cut(s) 397, 1230, 1372
BtsI GCAGTG 2 cut(s) 720, 842
BtsIMutI CAGTG 4 cut(s) 574, 720, 842, 1176
BtuMI TCGCGA 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 58, 231, 1058
CfoI GCGC 2 cut(s) 169, 1325
Cfr10I RCCGGY 2 cut(s) 29, 272
Cfr13I GGNCC 3 cut(s) 32, 232, 266
Csp6I GTAC 3 cut(s) 377, 1041, 1195
CspAI ACCGGT 1 cut(s) 29
CviQI GTAC 3 cut(s) 377, 1041, 1195
DdeI CTNAG 2 cut(s) 861, 866
DpnI GATC 3 cut(s) 1125, 1149, 1263
DpnII GATC 3 cut(s) 1123, 1147, 1261
EaeI YGGCCR 3 cut(s) 389, 540, 700
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 32, 266
Eco57I CTGAAG 1 cut(s) 1319
Eco91I GGTNACC 1 cut(s) 555
EcoNI CCTNNNNNAGG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 1273
EcoRII CCWGG 1 cut(s) 1207
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 786
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 405
FaqI GGGAC 1 cut(s) 1094
FauI CCCGC 3 cut(s) 732, 1052, 1242
FblI GTMKAC 2 cut(s) 78, 975
Fnu4HI GCNGC 7 cut(s) 441, 816, 1104, 1137, 1238, 1321, 1326
FokI GGATG 2 cut(s) 384, 1217
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 7 cut(s) 441, 816, 1104, 1137, 1238, 1321, 1326
FspBI CTAG 3 cut(s) 288, 596, 710
GlaI GCGC 2 cut(s) 168, 1324
GluI GCNGC 7 cut(s) 441, 816, 1104, 1137, 1238, 1321, 1326
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 4 cut(s) 233, 391, 542, 702
HapII CCGG 2 cut(s) 30, 273
HhaI GCGC 2 cut(s) 169, 1325
Hin6I GCGC 2 cut(s) 167, 1323
HinP1I GCGC 2 cut(s) 167, 1323
HincII GTYRAC 2 cut(s) 79, 345
HindII GTYRAC 2 cut(s) 79, 345
HinfI GANTC 6 cut(s) 173, 587, 748, 918, 1204, 1346
HpaI GTTAAC 1 cut(s) 345
HpaII CCGG 2 cut(s) 30, 273
HphI GGTGA 1 cut(s) 549
Hpy166II GTNNAC 8 cut(s) 9, 79, 345, 377, 526, 976, 1158, 1203
Hpy188I TCNGA 8 cut(s) 178, 328, 862, 917, 923, 963, 1279, 1366
Hpy188III TCNNGA 7 cut(s) 98, 577, 596, 1072, 1094, 1297, 1343
Hpy8I GTNNAC 8 cut(s) 9, 79, 345, 377, 526, 976, 1158, 1203
Hpy99I CGWCG 2 cut(s) 74, 80
HpyAV CCTTC 6 cut(s) 257, 411, 884, 899, 1114, 1294
HpyCH4III ACNGT 5 cut(s) 349, 569, 796, 1223, 1248
HpyCH4IV ACGT 1 cut(s) 1154
HpyF10VI GCNNNNNNNGC 6 cut(s) 278, 303, 1026, 1053, 1062, 1331
HpyF3I CTNAG 2 cut(s) 861, 866
HpySE526I ACGT 1 cut(s) 1154
HspAI GCGC 2 cut(s) 167, 1323
KspAI GTTAAC 1 cut(s) 345
Kzo9I GATC 3 cut(s) 1123, 1147, 1261
LmnI GCTCC 3 cut(s) 294, 808, 1017
Lsp1109I GCAGC 6 cut(s) 427, 802, 1090, 1148, 1307, 1312
LweI GCATC 3 cut(s) 406, 793, 1239
MaeI CTAG 3 cut(s) 288, 596, 710
MaeII ACGT 1 cut(s) 1154
MaeIII GTNAC 3 cut(s) 308, 555, 931
MalI GATC 3 cut(s) 1125, 1149, 1263
MboI GATC 3 cut(s) 1123, 1147, 1261
MboII GAAGA 4 cut(s) 473, 775, 1283, 1331
MflI RGATCY 2 cut(s) 1123, 1147
MhlI GDGCHC 3 cut(s) 299, 805, 1160
MlsI TGGCCA 2 cut(s) 391, 702
MluCI AATT 7 cut(s) 434, 444, 704, 776, 949, 999, 1273
MluNI TGGCCA 2 cut(s) 391, 702
MlyI GAGTC 2 cut(s) 927, 1198
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 4 cut(s) 7, 603, 624, 978
Mox20I TGGCCA 2 cut(s) 391, 702
Mph1103I ATGCAT 1 cut(s) 786
MroXI GAANNNNTTC 1 cut(s) 183
MscI TGGCCA 2 cut(s) 391, 702
MseI TTAA 5 cut(s) 114, 344, 362, 477, 825
Msp20I TGGCCA 2 cut(s) 391, 702
MspI CCGG 2 cut(s) 30, 273
MspR9I CCNGG 1 cut(s) 1209
Mva1269I GAATGC 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 1209
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 6 cut(s) 278, 303, 1026, 1053, 1062, 1331
NdeII GATC 3 cut(s) 1123, 1147, 1261
NlaIV GGNNCC 5 cut(s) 296, 635, 1125, 1149, 1216
NmuCI GTSAC 2 cut(s) 308, 555
NruI TCGCGA 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 5 cut(s) 252, 375, 383, 1060, 1201
PaeI GCATGC 1 cut(s) 1060
PciI ACATGT 2 cut(s) 379, 1197
PctI GAATGC 1 cut(s) 1065
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 4 cut(s) 173, 587, 748, 1346
PinAI ACCGGT 1 cut(s) 29
PkrI GCNGC 7 cut(s) 442, 817, 1105, 1138, 1239, 1322, 1327
PleI GAGTC 2 cut(s) 926, 1198
PpsI GAGTC 2 cut(s) 926, 1198
Ppu21I YACGTR 1 cut(s) 1155
PpuMI RGGWCCY 1 cut(s) 266
PscI ACATGT 2 cut(s) 379, 1197
PshBI ATTAAT 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 1207
PspEI GGTNACC 1 cut(s) 555
PspGI CCWGG 1 cut(s) 1207
PspN4I GGNNCC 5 cut(s) 296, 635, 1125, 1149, 1216
PspPI GGNCC 3 cut(s) 32, 232, 266
PspPPI RGGWCCY 1 cut(s) 266
PsuI RGATCY 2 cut(s) 1123, 1147
RruI TCGCGA 1 cut(s) 99
RsaI GTAC 3 cut(s) 378, 1042, 1196
RsaNI GTAC 3 cut(s) 377, 1041, 1195
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 5 cut(s) 114, 344, 362, 477, 825
SatI GCNGC 7 cut(s) 441, 816, 1104, 1137, 1238, 1321, 1326
Sau3AI GATC 3 cut(s) 1123, 1147, 1261
Sau96I GGNCC 3 cut(s) 32, 232, 266
SchI GAGTC 2 cut(s) 927, 1198
ScrFI CCNGG 1 cut(s) 1209
SduI GDGCHC 3 cut(s) 299, 805, 1160
SfaNI GCATC 3 cut(s) 406, 793, 1239
SfcI CTRYAG 1 cut(s) 972
SinI GGWCC 2 cut(s) 32, 266
SphI GCATGC 1 cut(s) 1060
Sse9I AATT 7 cut(s) 434, 444, 704, 776, 949, 999, 1273
SsiI CCGC 6 cut(s) 85, 340, 739, 1045, 1235, 1238
SspMI CTAG 3 cut(s) 288, 596, 710
StyD4I CCNGG 1 cut(s) 1207
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 5 cut(s) 349, 569, 796, 1223, 1248
TaiI ACGT 1 cut(s) 1157
TaqI TCGA 3 cut(s) 78, 159, 1349
TasI AATT 7 cut(s) 434, 444, 704, 776, 949, 999, 1273
TatI WGTACW 2 cut(s) 376, 1194
TauI GCSGC 1 cut(s) 1240
TfiI GAWTC 4 cut(s) 173, 587, 748, 1346
Tru1I TTAA 5 cut(s) 114, 344, 362, 477, 825
Tru9I TTAA 5 cut(s) 114, 344, 362, 477, 825
TscAI CASTG 4 cut(s) 574, 720, 849, 1183
TseFI GTSAC 2 cut(s) 308, 555
TseI GCWGC 6 cut(s) 440, 815, 1103, 1136, 1320, 1325
Tsp45I GTSAC 2 cut(s) 308, 555
TspDTI ATGAA 4 cut(s) 123, 276, 675, 918
TspGWI ACGGA 1 cut(s) 788
TspRI CASTG 4 cut(s) 574, 720, 849, 1183
VneI GTGCAC 1 cut(s) 1156
VpaK11BI GGWCC 2 cut(s) 32, 266
VspI ATTAAT 1 cut(s) 477
XagI CCTNNNNNAGG 1 cut(s) 286
XapI RAATTY 2 cut(s) 776, 1273
XbaI TCTAGA 1 cut(s) 595
XceI RCATGY 5 cut(s) 252, 375, 383, 1060, 1201
XcmI CCANNNNNNNNNTGG 1 cut(s) 1068
XmiI GTMKAC 2 cut(s) 78, 975
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 3 cut(s) 288, 596, 710
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.