Rorug01G0379000

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006869
Physical Location & Seq
Reverse (-)
49221757 .. 49226529
4773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0379000.1

Sequence Viewer

Length: 2382 bp
ATGAACATAGTGGATCCGTCAGTGACTTTACTGGCCGCAAGCGGCGGCGACACCGTGAAGCTCTTCGACGTTTCCGTCAAGTCCGGCGATCCATGCGTCTCCAGCTACATTCCTTCTCCGGGTTGCCACGTCAACTCCGTCAAGTGGAATCACACCAATTTGGTTGTGGTGAGTGCCGGAGATGATAAGAAGATATCGTTGTGGCATAAGAATGGGCAGAGCTTGGGGACTATTCCGGTGGCCGGGACGGACAGTGGTGACAACATTGAGGAGTCTATATCGGCGCTTAGCTTCAGTAACAAGGTTTCGAGATATATATGTTCTGGTGGGAGCGGTCAGGTTGTGAGGATATGGGATTTGCAGAGAAAGAGATGTATTAAATGGTTGAGGGGCCACTCGAGTACTATTACTGGCGCAGCGTACAATTGCAAAGATGAGCACTTGGCTTCCATCAGCCTTAGTGGGGATCTCATAATCCACAACCTGGCATCTAGTACAAGAACAACCGAATTTAAGGACCCTAATGGACAGGTACTAAGAGTGCTTGATTATTCCCGGATTAGCCGACACCTTTTGGTGACTGCAGGTGATGATGGCTCTGTGCATTTGTGGGACACAACTGGTCGTAGCCCAAAGATTTCTTGGTTGAAGCAGCATTCTGCACCAACTGCTGGTATCAGTTTCTCACCGTCAAATGACAAGATGTTTGCTAGTGTCGGGCTCGATAAAAAGTTGTATACTTACGACTCAGGGTCTAGGAGACATTCATCTTGCATCTCCTATGAGGCACCTTTTTCTGCATTGGCATTTAGAGATGATGGCTGGGTACTAGCAGCTGGAACAAGTAGCGGTCGTGTTGTATTTTATGATGTCCGTGGTAAACCAGAGCCTTTTACTGTTCTTCGTGCTTATAATAGTTCAGAGGCTGTTACAAGTTTATGCTGGCAAAGGTCGAAACCTGTCGTTGTAAATGAAAGCAGTTGTTCTGTTGAGACTGCGCTTTTAGGAGATGCTGTTGAAGATTCAATCCTTATGCCTGATCCACTTCCTTCTGTGACTTCATCAAACCTTTCTCTATCTATGGCAGTATCTAGTTCTCGGAATCCAGGCCGTTCTGGTTTATCTGCTGATACATTTTCAGTTACAGCAACTGGCAGTGGATTAGCGTCAACCACACTTAATGTTTCTACTGCAGAGGATACACCACATCGCGGGCATTTGTGGCCAGGTGGAACATTGTCAAGATTGCATGCTCCTCGATCTACTTTTAACTTCAAGGATGATATGGAGGTATTTTCCCCTCTTGTGGATGTTCATCCTATCACACCTACACTTGACAAGCTGTGGGATGATCATGACAGATCAAAGAAGGATAGTGTAGATAAGAAGCCTTCATCACTATTATTTCCCTCGTCCGGTAGGAGGTTCCCATTGGCAGAGGATGTGTCAAGTGATCATCCAATATTTGATTGGAAGCCTAGCTCAGCTTCTAAACAGGATGACAGCAAATCTTCATTTGCTCGATTAGAATCAACTCCTGCTCCGTATTCCAAGAGTGAAGACTCATCCATCACCCCTCCAGAAGCTTGGGGCGGTGAAAGATTATCTGATAAGTATACCAACCTGCTTCAGCCAAACATTATGCCATCTCGCTTTGGGATGTCAGCTCAGACATCAGGATCACTTATATCTGGATTACCAGATACATCCTTATCAACAAGTCAGACAAGTATTAGCTCTACAAGCTTAAACTATGCGAATATGCGCATTAAAGATGTCTCTTTCAATCACGAGAATTCCTTGGGATTTCCAGAACACGTTAACTCTAGTGCCATGCCTATGTCCCCTGGTAGCAAAGGAATCATGGGACAGTGTAGCCTTGATTCACCAACATCGTCTTTGACCCTCCATCGGAGATTCTCTACTTATGCAGAGAGGATAGGCACTACATCTTCCTTCAGCGACAGAACATCACTCGCAGTGGGTTCACCAAAAACAAAGAAAACAGGAGCTGAAATGAGAGAATTGTTAACTAGCTTGGTGTCAAAGTCAGATACATCAACTGCCACAGAATCAGGGATTCTTCCAGCAATGAACGGAGGAACCTCACAACTGCAGAAGGTCCCTCAACAAGATGCACAGCAGGGAAATTCCTTTACATTTCAGATTTTTCAACGTACTCTAGAAGAGACTCTTGATTCCTTTCAGAAATCAGTACATGAAGATATGAGGAACCTTCATATAGAAATTTTAAGACAATTCCACATGCAAGAGACGGATATGTCAACGGTAATGAGTAAAATTCTGGCAAACCAAGCTGAGCTAATGGAAGAAGTTAAATCTCTGCGGAAAGAAAACCAGCAACTCCGGCAATTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

793

Amino Acids

86.15

Weight (kDa)

6.53

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 5 - 157 1.1e-06 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 8 - 172 1.3e-16 WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 11 - 163 5.6e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 43 - 137 8.6e-10 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 43 - 205 4e-06 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 44 - 240 1.5e-17 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 55 - 245 1.5e-09 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st PF25173 90 - 249 2.9e-16 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 92 - 175 4.4e-06 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 94 - 207 3.1e-07 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 103 - 229 3.1e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 106 - 205 8.4e-06 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 132 - 207 7.5e-06 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 146 - 250 5.5e-06 MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st PF24817 159 - 319 7.7e-09 WDHD1 first WD40 domain
Beta-prop_EIPR1 PF23609 177 - 245 2.9e-06 EIPR1 beta-propeller
Beta-prop_WDR5 PF25175 183 - 294 1.8e-08 WDR5 beta-propeller domain
WD40_Prp19 PF24814 188 - 313 2.9e-12 Prp19 WD40 domain
WD40_RFWD3 PF23419 213 - 314 6.9e-06 E3 ubiquitin-protein ligase RFWD3 WD40 domain
Beta-prop_THOC3 PF25174 215 - 323 9.5e-09 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 225 - 312 4.4e-06 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 238 - 319 9.9e-06 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 912
AarI CACCTGC 1 cut(s) 575
AasI GACNNNNNNGTC 2 cut(s) 74, 2281
Acc16I TGCGCA 1 cut(s) 1766
Acc36I ACCTGC 2 cut(s) 575, 1632
AccB1I GGYRCC 1 cut(s) 787
AccB7I CCANNNNNTGG 2 cut(s) 484, 671
AccBSI CCGCTC 1 cut(s) 333
AccI GTMKAC 2 cut(s) 737, 1616
AccII CGCG 1 cut(s) 1212
AciI CCGC 8 cut(s) 36, 42, 45, 333, 849, 1212, 1593, 2347
AclWI GGATC 6 cut(s) 8, 21, 83, 474, 1034, 1687
AcoI YGGCCR 3 cut(s) 33, 240, 1223
AcsI RAATTY 5 cut(s) 509, 1795, 2149, 2247, 2301
AcuI CTGAAG 3 cut(s) 277, 1613, 1942
AfaI GTAC 7 cut(s) 403, 422, 496, 534, 828, 2179, 2217
AflIII ACRYGT 1 cut(s) 1816
AgsI TTSAA 6 cut(s) 649, 1019, 1026, 1276, 1786, 2174
AhdI GACNNNNNGTC 1 cut(s) 751
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 4 cut(s) 483, 1105, 1225, 1846
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 6 cut(s) 103, 754, 986, 1783, 2183, 2267
AlwI GGATC 6 cut(s) 8, 21, 83, 474, 1034, 1687
AlwNI CAGNNNCTG 3 cut(s) 926, 1151, 2012
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 5 cut(s) 33, 240, 391, 1108, 1223
ApeKI GCWGC 3 cut(s) 416, 652, 833
ApoI RAATTY 5 cut(s) 509, 1795, 2149, 2247, 2301
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 4 cut(s) 286, 416, 1000, 1767
AspS9I GGNCC 3 cut(s) 391, 517, 2122
AsuC2I CCSGG 3 cut(s) 120, 244, 556
AsuHPI GGTGA 9 cut(s) 181, 269, 589, 599, 678, 1564, 1607, 1878, 1980
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 2 cut(s) 517, 2122
BalI TGGCCA 1 cut(s) 1225
BamHI GGATCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 723
BauI CACGAG 1 cut(s) 1790
BbsI GAAGAC 1 cut(s) 1566
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 428, 664, 845
BccI CCATC 6 cut(s) 458, 587, 812, 1577, 1654, 1917
BceAI ACGGC 1 cut(s) 1095
BcgI CGANNNNNNTGC 2 cut(s) 1238, 1272
BciT130I CCWGG 4 cut(s) 485, 1107, 1227, 1848
BciVI GTATCC 1 cut(s) 1192
BclI TGATCA 2 cut(s) 1351, 1453
BcnI CCSGG 3 cut(s) 120, 244, 556
BcoDI GTCTC 6 cut(s) 103, 754, 986, 1783, 2183, 2267
BfaI CTAG 9 cut(s) 492, 711, 756, 830, 1092, 1479, 1827, 2034, 2183
BfmI CTRYAG 3 cut(s) 582, 1191, 2114
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 2 cut(s) 575, 1632
BfuI GTATCC 1 cut(s) 1192
BisI GCNGC 6 cut(s) 36, 43, 46, 417, 653, 834
BlpI GCTNAGC 3 cut(s) 287, 1483, 2319
BlsI GCNGC 6 cut(s) 37, 44, 47, 418, 654, 835
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 7 cut(s) 120, 244, 485, 556, 1107, 1227, 1848
Bme18I GGWCC 2 cut(s) 517, 2122
BmeRI GACNNNNNGTC 1 cut(s) 751
BmeT110I CYCGRG 1 cut(s) 397
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 3 cut(s) 391, 517, 2122
BmiI GGNNCC 8 cut(s) 15, 392, 519, 789, 1427, 2104, 2124, 2234
BmrFI CCNGG 7 cut(s) 120, 244, 485, 556, 1107, 1227, 1848
BmsI GCATC 4 cut(s) 497, 783, 1000, 2125
BpiI GAAGAC 1 cut(s) 1566
BpmI CTGGAG 2 cut(s) 85, 1563
Bpu1102I GCTNAGC 3 cut(s) 287, 1483, 2319
BpuMI CCSGG 3 cut(s) 120, 244, 556
BsaBI GATNNNNATC 2 cut(s) 1314, 1528
BsaJI CCNNGG 3 cut(s) 874, 1800, 1846
BsaWI WCCGGW 2 cut(s) 235, 1415
BsaXI ACNNNNNCTCC 6 cut(s) 119, 149, 999, 1029, 1525, 1555
Bse1I ACTGG 4 cut(s) 36, 415, 625, 1156
Bse3DI GCAATG 1 cut(s) 2097
Bse8I GATNNNNATC 2 cut(s) 1314, 1528
BseBI CCWGG 4 cut(s) 485, 1107, 1227, 1848
BseDI CCNNGG 3 cut(s) 874, 1800, 1846
BseJI GATNNNNATC 2 cut(s) 1314, 1528
BseMI GCAATG 1 cut(s) 2097
BseMII CTCAG 4 cut(s) 762, 1497, 1682, 2310
BseNI ACTGG 4 cut(s) 36, 415, 625, 1156
BseRI GAGGAG 2 cut(s) 284, 1245
BseXI GCAGC 3 cut(s) 428, 664, 845
BseYI CCCAGC 1 cut(s) 822
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 1212
Bsh1285I CGRYCG 1 cut(s) 853
BshFI GGCC 5 cut(s) 35, 242, 393, 1110, 1225
BshNI GGYRCC 1 cut(s) 787
BsiEI CGRYCG 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 8 cut(s) 84, 119, 177, 236, 243, 556, 1416, 2368
BslFI GGGAC 6 cut(s) 241, 259, 626, 1828, 1881, 2108
BsmAI GTCTC 6 cut(s) 103, 754, 986, 1783, 2183, 2267
BsmBI CGTCTC 2 cut(s) 103, 2267
BsmFI GGGAC 6 cut(s) 241, 259, 626, 1828, 1881, 2108
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 5 cut(s) 35, 242, 393, 1110, 1225
BsoBI CYCGRG 1 cut(s) 397
Bsp1286I GDGCHC 2 cut(s) 441, 723
Bsp143I GATC 9 cut(s) 13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
Bsp1720I GCTNAGC 3 cut(s) 287, 1483, 2319
BspACI CCGC 8 cut(s) 36, 42, 45, 333, 849, 1212, 1593, 2347
BspANI GGCC 5 cut(s) 35, 242, 393, 1110, 1225
BspCNI CTCAG 4 cut(s) 761, 1496, 1681, 2311
BspFNI CGCG 1 cut(s) 1212
BspHI TCATGA 1 cut(s) 1354
BspLI GGNNCC 8 cut(s) 15, 392, 519, 789, 1427, 2104, 2124, 2234
BspMAI CTGCAG 3 cut(s) 586, 1195, 2118
BspMI ACCTGC 2 cut(s) 575, 1632
BspPI GGATC 6 cut(s) 8, 21, 83, 474, 1034, 1687
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 787
BsrBI CCGCTC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 2097
BsrI ACTGG 4 cut(s) 36, 415, 625, 1156
BssECI CCNNGG 3 cut(s) 874, 1800, 1846
BssMI GATC 9 cut(s) 13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
BssNAI GTATAC 2 cut(s) 738, 1617
BssSI CACGAG 1 cut(s) 1790
BssT1I CCWWGG 1 cut(s) 1800
Bst1107I GTATAC 2 cut(s) 738, 1617
Bst2BI CACGAG 1 cut(s) 1790
Bst2UI CCWGG 4 cut(s) 485, 1107, 1227, 1848
Bst4CI ACNGT 6 cut(s) 55, 254, 690, 898, 1872, 2290
Bst6I CTCTTC 2 cut(s) 68, 2181
BstAPI GCANNNNNTGC 1 cut(s) 668
BstC8I GCNNGC 4 cut(s) 40, 944, 1214, 1251
BstDEI CTNAG 7 cut(s) 287, 458, 536, 748, 1483, 1668, 2319
BstDSI CCRYGG 1 cut(s) 874
BstFNI CGCG 1 cut(s) 1212
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 4 cut(s) 286, 416, 1000, 1767
BstKTI GATC 9 cut(s) 16, 91, 469, 1042, 1262, 1354, 1364, 1456, 1682
BstMAI GTCTC 6 cut(s) 103, 754, 986, 1783, 2183, 2267
BstMBI GATC 9 cut(s) 13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
BstMCI CGRYCG 1 cut(s) 853
BstMWI GCNNNNNNNGC 7 cut(s) 93, 102, 668, 1222, 1743, 2315, 2368
BstNI CCWGG 4 cut(s) 485, 1107, 1227, 1848
BstNSI RCATGY 2 cut(s) 1253, 2269
BstSCI CCNGG 7 cut(s) 118, 242, 483, 554, 1105, 1225, 1846
BstSFI CTRYAG 3 cut(s) 582, 1191, 2114
BstUI CGCG 1 cut(s) 1212
BstV1I GCAGC 3 cut(s) 428, 664, 845
BstV2I GAAGAC 1 cut(s) 1566
BstX2I RGATCY 2 cut(s) 13, 466
BstXI CCANNNNNNTGG 1 cut(s) 1587
BstYI RGATCY 2 cut(s) 13, 466
BstZ17I GTATAC 2 cut(s) 738, 1617
BsuI GTATCC 1 cut(s) 1192
BsuRI GGCC 5 cut(s) 35, 242, 393, 1110, 1225
BtgI CCRYGG 1 cut(s) 874
BtgZI GCGATG 1 cut(s) 1193
BtrI CACGTC 1 cut(s) 130
BtsI GCAGTG 2 cut(s) 1162, 1986
BtsIMutI CAGTG 5 cut(s) 27, 259, 1162, 1877, 1986
BveI ACCTGC 2 cut(s) 575, 1632
Cac8I GCNNGC 4 cut(s) 40, 944, 1214, 1251
CaiI CAGNNNCTG 3 cut(s) 926, 1151, 2012
CciI TCATGA 1 cut(s) 1354
CfoI GCGC 4 cut(s) 286, 416, 1000, 1767
Cfr13I GGNCC 3 cut(s) 391, 517, 2122
CseI GACGC 2 cut(s) 85, 1155
Csp6I GTAC 7 cut(s) 402, 421, 495, 533, 827, 2178, 2216
CviAII CATG 7 cut(s) 93, 1250, 1355, 1834, 1864, 2219, 2266
CviQI GTAC 7 cut(s) 402, 421, 495, 533, 827, 2178, 2216
DdeI CTNAG 7 cut(s) 287, 458, 536, 748, 1483, 1668, 2319
DpnI GATC 9 cut(s) 15, 90, 468, 1041, 1261, 1353, 1363, 1455, 1681
DpnII GATC 9 cut(s) 13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
DrdI GACNNNNNNGTC 2 cut(s) 74, 2281
DriI GACNNNNNGTC 1 cut(s) 751
DseDI GACNNNNNNGTC 2 cut(s) 74, 2281
EaeI YGGCCR 3 cut(s) 33, 240, 1223
Eam1104I CTCTTC 2 cut(s) 68, 2181
Eam1105I GACNNNNNGTC 1 cut(s) 751
EarI CTCTTC 2 cut(s) 68, 2181
Eco130I CCWWGG 1 cut(s) 1800
Eco24I GRGCYC 1 cut(s) 723
Eco32I GATATC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 517, 2122
Eco57I CTGAAG 3 cut(s) 277, 1613, 1942
Eco88I CYCGRG 1 cut(s) 397
EcoO109I RGGNCCY 2 cut(s) 517, 2122
EcoRI GAATTC 1 cut(s) 1795
EcoRII CCWGG 4 cut(s) 483, 1105, 1225, 1846
EcoRV GATATC 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 1800
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 1800
Esp3I CGTCTC 2 cut(s) 103, 2267
FaeI CATG 7 cut(s) 96, 1253, 1358, 1837, 1867, 2222, 2269
FalI AAGNNNNNCTT 2 cut(s) 2178, 2210
FaqI GGGAC 6 cut(s) 241, 259, 626, 1828, 1881, 2108
FatI CATG 7 cut(s) 92, 1249, 1354, 1833, 1863, 2218, 2265
FauI CCCGC 1 cut(s) 1205
FbaI TGATCA 2 cut(s) 1351, 1453
FblI GTMKAC 2 cut(s) 737, 1616
Fnu4HI GCNGC 6 cut(s) 36, 43, 46, 417, 653, 834
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 6 cut(s) 36, 43, 46, 417, 653, 834
FspAI RTGCGCAY 1 cut(s) 1766
FspBI CTAG 9 cut(s) 492, 711, 756, 830, 1092, 1479, 1827, 2034, 2183
FspI TGCGCA 1 cut(s) 1766
GlaI GCGC 4 cut(s) 285, 415, 999, 1766
GluI GCNGC 6 cut(s) 36, 43, 46, 417, 653, 834
GsaI CCCAGC 1 cut(s) 826
GsuI CTGGAG 2 cut(s) 85, 1563
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 5 cut(s) 35, 242, 393, 1110, 1225
HapII CCGG 8 cut(s) 84, 119, 177, 236, 243, 556, 1416, 2368
HgaI GACGC 2 cut(s) 85, 1155
HhaI GCGC 4 cut(s) 286, 416, 1000, 1767
Hin1II CATG 7 cut(s) 96, 1253, 1358, 1837, 1867, 2222, 2269
Hin6I GCGC 4 cut(s) 284, 414, 998, 1765
HinP1I GCGC 4 cut(s) 284, 414, 998, 1765
HincII GTYRAC 5 cut(s) 133, 1170, 1822, 2031, 2286
HindII GTYRAC 5 cut(s) 133, 1170, 1822, 2031, 2286
HindIII AAGCTT 2 cut(s) 1584, 1744
HpaI GTTAAC 2 cut(s) 1822, 2031
HpaII CCGG 8 cut(s) 84, 119, 177, 236, 243, 556, 1416, 2368
HphI GGTGA 9 cut(s) 181, 269, 589, 599, 678, 1564, 1607, 1878, 1980
Hpy166II GTNNAC 9 cut(s) 133, 738, 881, 1170, 1617, 1822, 1988, 2031, 2286
Hpy188I TCNGA 9 cut(s) 922, 1101, 1609, 1671, 1725, 1914, 2053, 2166, 2208
Hpy8I GTNNAC 9 cut(s) 133, 738, 881, 1170, 1617, 1822, 1988, 2031, 2286
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 7 cut(s) 123, 1059, 1363, 1401, 1966, 2113, 2246
HpyCH4III ACNGT 6 cut(s) 55, 254, 690, 898, 1872, 2290
HpyCH4IV ACGT 4 cut(s) 69, 129, 1818, 2176
HpyF10VI GCNNNNNNNGC 7 cut(s) 93, 102, 668, 1222, 1743, 2315, 2368
HpyF3I CTNAG 7 cut(s) 287, 458, 536, 748, 1483, 1668, 2319
HpySE526I ACGT 4 cut(s) 69, 129, 1818, 2176
Hsp92II CATG 7 cut(s) 96, 1253, 1358, 1837, 1867, 2222, 2269
HspAI GCGC 4 cut(s) 284, 414, 998, 1765
Ksp22I TGATCA 2 cut(s) 1351, 1453
KspAI GTTAAC 2 cut(s) 1822, 2031
Kzo9I GATC 9 cut(s) 13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 4 cut(s) 330, 1258, 1546, 2009
Lsp1109I GCAGC 3 cut(s) 428, 664, 845
LweI GCATC 4 cut(s) 497, 783, 1000, 2125
MaeI CTAG 9 cut(s) 492, 711, 756, 830, 1092, 1479, 1827, 2034, 2183
MaeII ACGT 4 cut(s) 69, 129, 1818, 2176
MaeIII GTNAC 7 cut(s) 22, 257, 296, 577, 928, 1054, 1141
MalI GATC 9 cut(s) 15, 90, 468, 1041, 1261, 1353, 1363, 1455, 1681
MbiI CCGCTC 1 cut(s) 333
MboI GATC 9 cut(s) 13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
MfeI CAATTG 2 cut(s) 424, 2372
MflI RGATCY 2 cut(s) 13, 466
MhlI GDGCHC 2 cut(s) 441, 723
MlsI TGGCCA 1 cut(s) 1225
MluNI TGGCCA 1 cut(s) 1225
MlyI GAGTC 4 cut(s) 281, 740, 1556, 2185
Mox20I TGGCCA 1 cut(s) 1225
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 1 cut(s) 1225
MslI CAYNNNNRTG 2 cut(s) 210, 1838
Msp20I TGGCCA 1 cut(s) 1225
MspA1I CMGCKG 1 cut(s) 836
MspI CCGG 8 cut(s) 84, 119, 177, 236, 243, 556, 1416, 2368
MspR9I CCNGG 7 cut(s) 120, 244, 485, 556, 1107, 1227, 1848
MunI CAATTG 2 cut(s) 424, 2372
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 4 cut(s) 485, 1107, 1227, 1848
MvnI CGCG 1 cut(s) 1212
MwoI GCNNNNNNNGC 7 cut(s) 93, 102, 668, 1222, 1743, 2315, 2368
NciI CCSGG 3 cut(s) 120, 244, 556
NdeII GATC 9 cut(s) 13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
NlaIII CATG 7 cut(s) 96, 1253, 1358, 1837, 1867, 2222, 2269
NlaIV GGNNCC 8 cut(s) 15, 392, 519, 789, 1427, 2104, 2124, 2234
NmuCI GTSAC 4 cut(s) 22, 257, 577, 1054
NsbI TGCGCA 1 cut(s) 1766
NspI RCATGY 2 cut(s) 1253, 2269
PaeI GCATGC 1 cut(s) 1253
PaeR7I CTCGAG 1 cut(s) 397
PagI TCATGA 1 cut(s) 1354
PaqCI CACCTGC 1 cut(s) 575
PciSI GCTCTTC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 135
PctI GAATGC 1 cut(s) 655
PdmI GAANNNNTTC 1 cut(s) 62
PflMI CCANNNNNTGG 2 cut(s) 484, 671
PfoI TCCNGGA 1 cut(s) 554
PkrI GCNGC 6 cut(s) 37, 44, 47, 418, 654, 835
PleI GAGTC 4 cut(s) 280, 740, 1556, 2185
PpsI GAGTC 4 cut(s) 280, 740, 1556, 2185
PpuMI RGGWCCY 2 cut(s) 517, 2122
PsiI TTATAA 1 cut(s) 912
Psp5II RGGWCCY 2 cut(s) 517, 2122
Psp6I CCWGG 4 cut(s) 483, 1105, 1225, 1846
PspFI CCCAGC 1 cut(s) 822
PspGI CCWGG 4 cut(s) 483, 1105, 1225, 1846
PspN4I GGNNCC 8 cut(s) 15, 392, 519, 789, 1427, 2104, 2124, 2234
PspPI GGNCC 3 cut(s) 391, 517, 2122
PspPPI RGGWCCY 2 cut(s) 517, 2122
PspXI VCTCGAGB 1 cut(s) 397
PstI CTGCAG 3 cut(s) 586, 1195, 2118
PstNI CAGNNNCTG 3 cut(s) 926, 1151, 2012
PsuI RGATCY 2 cut(s) 13, 466
PvuII CAGCTG 1 cut(s) 836
RsaI GTAC 7 cut(s) 403, 422, 496, 534, 828, 2179, 2217
RsaNI GTAC 7 cut(s) 402, 421, 495, 533, 827, 2178, 2216
RseI CAYNNNNRTG 2 cut(s) 210, 1838
SapI GCTCTTC 1 cut(s) 68
SatI GCNGC 6 cut(s) 36, 43, 46, 417, 653, 834
Sau3AI GATC 9 cut(s) 13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
Sau96I GGNCC 3 cut(s) 391, 517, 2122
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 4 cut(s) 281, 740, 1556, 2185
ScrFI CCNGG 7 cut(s) 120, 244, 485, 556, 1107, 1227, 1848
SduI GDGCHC 2 cut(s) 441, 723
SfaNI GCATC 4 cut(s) 497, 783, 1000, 2125
SfcI CTRYAG 3 cut(s) 582, 1191, 2114
Sfr274I CTCGAG 1 cut(s) 397
SinI GGWCC 2 cut(s) 517, 2122
SlaI CTCGAG 1 cut(s) 397
SmiMI CAYNNNNRTG 2 cut(s) 210, 1838
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
SphI GCATGC 1 cut(s) 1253
SsiI CCGC 8 cut(s) 36, 42, 45, 333, 849, 1212, 1593, 2347
SspI AATATT 1 cut(s) 1464
SspMI CTAG 9 cut(s) 492, 711, 756, 830, 1092, 1479, 1827, 2034, 2183
StyD4I CCNGG 7 cut(s) 118, 242, 483, 554, 1105, 1225, 1846
StyI CCWWGG 1 cut(s) 1800
TaaI ACNGT 6 cut(s) 55, 254, 690, 898, 1872, 2290
TaiI ACGT 4 cut(s) 72, 132, 1821, 2179
TaqI TCGA 7 cut(s) 66, 308, 398, 723, 953, 1258, 1522
TatI WGTACW 3 cut(s) 401, 494, 2215
TauI GCSGC 3 cut(s) 38, 45, 48
TscAI CASTG 5 cut(s) 27, 259, 1162, 1877, 1986
TseFI GTSAC 4 cut(s) 22, 257, 577, 1054
TseI GCWGC 3 cut(s) 416, 652, 833
Tsp45I GTSAC 4 cut(s) 22, 257, 577, 1054
TspGWI ACGGA 8 cut(s) 6, 64, 127, 263, 863, 1533, 2112, 2291
TspRI CASTG 5 cut(s) 27, 259, 1162, 1877, 1986
Van91I CCANNNNNTGG 2 cut(s) 484, 671
VpaK11BI GGWCC 2 cut(s) 517, 2122
XapI RAATTY 5 cut(s) 509, 1795, 2149, 2247, 2301
XbaI TCTAGA 1 cut(s) 2182
XceI RCATGY 2 cut(s) 1253, 2269
XcmI CCANNNNNNNNNTGG 3 cut(s) 163, 639, 1467
XhoI CTCGAG 1 cut(s) 397
XmiI GTMKAC 2 cut(s) 737, 1616
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 9 cut(s) 492, 711, 756, 830, 1092, 1479, 1827, 2034, 2183
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.