Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015325

Physical Location & Seq

Genomic Coordinates Reverse (-)

75228 .. 78695

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1001000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTTTTACAGTTGCCATCCCCTTCGGAGATTTTCTCTACAAAACATCAATAACAAAGGGAACCAACAACAAAGCGAAAGTAAGAGGGAGAGAGAAGAATTGATGGGGCTGACGGTAAGGGCTCCCCGTCCAGTGTCGTCTGGGCCGCCGCTCTATTTGCAGTTGCGGCGATTCCCAAGCAAGCACATAGGAATAAGGAGCTTGCTTTTTAGATATGGTGGTCAAAATATTCTTCCTCGCAGCTTGAACATGAAATTCAGCTCTTGTGTTTCTGCAGCAAAGGCAACGTCGTCTAGTATTACAGCAGCGGCCACAGGTGCAGCAGCTGGTGGCGAAGATACGACGACTTCGTCGGAAGTGGAGGAGTTGAGAGAGATAAAAGACAAGTGCAGACAGTGGAAGTGGAAGGGTAGATACGCCATCAATTACTTTGTTTCTCTTTCTGATCCACCACCATCATCTTCAAATCCAAAACCGAAACCTCCTCTACTGCTTGTCCACGGTTTCGGAGCCTCCATTCTTCACTGGCGAAGAAACATTAGGACGTTGTCCCAGAATTATACCGTTTATGCTATTGACCTCCTTGGCTTTGGCACCTCGGAAAAGCCTACTGGATTCTCATATACCATGGAAAAATGGGCTCAGTTAATCTTGGATTTTCTGGACGAAATAGTTCAAAAGCCAACTGTATTGATAGGGAACTCTGTTGGAAGCCTTGCTTGTGTAATTGCTGCCTCAGAATCTAATAATAAAGCACTTGTTGGAGGGTTAGTGCTTTTAAATTGTGCTGGTGGTATGAATAATAAAGCAATTGTTGATGATTGGAGGATCAAGCTTTTGTTACCTTTGCTTTGGTTTTTTGACTTTCTACTCAAACAAAGACGAATTGCTTCGGCCATTTTTGAGCGTGTCAAACAAAGAGATACTATAAGGAATGCTTTATTGGCTGTTTATGGGAACAAGGAATCCGTCGATAAAGAATTAGTAGAGATAATCATGGAACCAACGTGCGACCCAGGGGCACTTGATGCGTTTGTTTCTATCGTGACTGGCCCCCCAGGACCAAACCCGATGCAGTTGATATCAAGAATGTCCGATATCCCTCTTCTAGTATTATGGGGGGATCAAGACCCCTTCACCCCGCTTGATGGACCTCTTGGCAAATACTTCGCTTCCCTGCCTTCTCAACACCCCCCCAATGTGAATGCGAATGCGAATGTGAGCTTCTTTGTTCTGCCAGGGGTTGGACATTGTCCCCATGATGACAGGCCCGAGTTAGTTCACGAAAGACTTCTACCCTGGTTGGATCACCTTTCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

441

Amino Acids

48.85

Weight (kDa)

9.06

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	158 - 309	7.7e-11	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	161 - 424	4.1e-23	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	163 - 428	9.9e-22	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38520 AT5G38520
fragaria_vesca	FvH4_2g37190
malus_domestica	MD08G1001000.v1.1
prunus_persica	Prupe.1G353100_v2.0.a1
pyrus_communis	pycom08g00040
rosa_chinensis	RchiOBHm_Chr6g0304501
rosa_laevigata	RLG00000010971
rosa_multiflora	Rmu_sc0023263.1_g000001 Rmu_ssc0000218.1_g000058
rosa_roxburghii	Rroxscaffold_7G00163690
rosa_rugosa	Rorug06G0332600
rosa_samantha	Rh6AG445100 Rh6CG457900 Rh6DG444700
rosa_wichuraiana	Rw6G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	593
AccB7I	CCANNNNNTGG	1 cut(s)	1244
AccBSI	CCGCTC	1 cut(s)	151
AciI	CCGC	5 cut(s)	146, 149, 166, 308, 1142
AclWI	GGATC	4 cut(s)	440, 836, 1131, 1314
AcoI	YGGCCR	2 cut(s)	309, 894
AcsI	RAATTY	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	1148, 1244
AgsI	TTSAA	3 cut(s)	247, 465, 677
AjnI	CCWGG	4 cut(s)	1015, 1057, 1237, 1298
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
AloI	GAACNNNNNNTCC	2 cut(s)	950, 982
AluBI	AGCT	6 cut(s)	201, 243, 261, 326, 835, 1224
AluI	AGCT	6 cut(s)	201, 243, 261, 326, 835, 1224
AlwI	GGATC	4 cut(s)	440, 836, 1131, 1314
AlwNI	CAGNNNCTG	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	1271
AoxI	GGCC	5 cut(s)	143, 309, 894, 1051, 1268
ApeKI	GCWGC	6 cut(s)	240, 275, 305, 320, 323, 731
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	3 cut(s)	672, 889, 1290
AspS9I	GGNCC	5 cut(s)	143, 1052, 1061, 1151, 1269
AsuHPI	GGTGA	2 cut(s)	1129, 1301
AvaI	CYCGRG	1 cut(s)	1271
AvaII	GGWCC	2 cut(s)	1061, 1151
BaeGI	GKGCMC	1 cut(s)	1024
BanI	GGYRCC	1 cut(s)	593
BanII	GRGCYC	2 cut(s)	124, 643
BarI	GAAGNNNNNNTAC	2 cut(s)	398, 430
BbvI	GCAGC	6 cut(s)	252, 287, 317, 332, 335, 718
BccI	CCATC	5 cut(s)	24, 97, 428, 463, 1142
BcgI	CGANNNNNNTGC	2 cut(s)	1150, 1184
BciT130I	CCWGG	4 cut(s)	1017, 1059, 1239, 1300
BfaI	CTAG	2 cut(s)	294, 1109
BfmI	CTRYAG	1 cut(s)	273
Bme1390I	CCNGG	4 cut(s)	1017, 1059, 1239, 1300
Bme18I	GGWCC	2 cut(s)	1061, 1151
BmeT110I	CYCGRG	1 cut(s)	1271
BmgT120I	GGNCC	5 cut(s)	143, 1052, 1061, 1151, 1269
BmiI	GGNNCC	6 cut(s)	62, 123, 511, 595, 1002, 1054
BmrFI	CCNGG	4 cut(s)	1017, 1059, 1239, 1300
BmsI	GCATC	2 cut(s)	1018, 1062
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BsaJI	CCNNGG	9 cut(s)	499, 583, 597, 627, 1015, 1016, 1057, 1238, 1298
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	1148, 1244
Bse1I	ACTGG	4 cut(s)	131, 530, 616, 1054
BseBI	CCWGG	4 cut(s)	1017, 1059, 1239, 1300
BseDI	CCNNGG	9 cut(s)	499, 583, 597, 627, 1015, 1016, 1057, 1238, 1298
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	1148, 1244
BseMII	CTCAG	2 cut(s)	656, 750
BseNI	ACTGG	4 cut(s)	131, 530, 616, 1054
BseRI	GAGGAG	2 cut(s)	377, 474
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	6 cut(s)	252, 287, 317, 332, 335, 718
BsgI	GTGCAG	2 cut(s)	339, 409
BshFI	GGCC	5 cut(s)	145, 311, 896, 1053, 1270
BshNI	GGYRCC	1 cut(s)	593
BsiHKCI	CYCGRG	1 cut(s)	1271
BslFI	GGGAC	2 cut(s)	535, 1239
BslI	CCNNNNNNNGG	2 cut(s)	1148, 1244
BsmFI	GGGAC	2 cut(s)	535, 1239
BsmI	GAATGC	3 cut(s)	940, 1210, 1216
BsnI	GGCC	5 cut(s)	145, 311, 896, 1053, 1270
BsoBI	CYCGRG	1 cut(s)	1271
Bsp1286I	GDGCHC	3 cut(s)	124, 643, 1024
Bsp143I	GATC	4 cut(s)	445, 828, 1123, 1306
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	5 cut(s)	146, 149, 166, 308, 1142
BspANI	GGCC	5 cut(s)	145, 311, 896, 1053, 1270
BspCNI	CTCAG	2 cut(s)	655, 749
BspLI	GGNNCC	6 cut(s)	62, 123, 511, 595, 1002, 1054
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	4 cut(s)	440, 836, 1131, 1314
BspT107I	GGYRCC	1 cut(s)	593
BsrBI	CCGCTC	1 cut(s)	151
BsrI	ACTGG	4 cut(s)	131, 530, 616, 1054
BssECI	CCNNGG	9 cut(s)	499, 583, 597, 627, 1015, 1016, 1057, 1238, 1298
BssMI	GATC	4 cut(s)	445, 828, 1123, 1306
BssT1I	CCWWGG	2 cut(s)	583, 627
Bst2UI	CCWGG	4 cut(s)	1017, 1059, 1239, 1300
Bst4CI	ACNGT	6 cut(s)	11, 115, 396, 503, 565, 688
Bst6I	CTCTTC	1 cut(s)	1110
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstC8I	GCNNGC	2 cut(s)	182, 203
BstDEI	CTNAG	2 cut(s)	642, 736
BstDSI	CCRYGG	2 cut(s)	499, 627
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	4 cut(s)	448, 831, 1126, 1309
BstMBI	GATC	4 cut(s)	445, 828, 1123, 1306
BstMWI	GCNNNNNNNGC	6 cut(s)	157, 166, 281, 317, 944, 1028
BstNI	CCWGG	4 cut(s)	1017, 1059, 1239, 1300
BstSCI	CCNGG	4 cut(s)	1015, 1057, 1237, 1298
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	1024
BstV1I	GCAGC	6 cut(s)	252, 287, 317, 332, 335, 718
BsuRI	GGCC	5 cut(s)	145, 311, 896, 1053, 1270
BtgI	CCRYGG	2 cut(s)	499, 627
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	3 cut(s)	138, 401, 523
Cac8I	GCNNGC	2 cut(s)	182, 203
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr13I	GGNCC	5 cut(s)	143, 1052, 1061, 1151, 1269
CviAII	CATG	4 cut(s)	250, 628, 997, 1259
DdeI	CTNAG	2 cut(s)	642, 736
DpnI	GATC	4 cut(s)	447, 830, 1125, 1308
DpnII	GATC	4 cut(s)	445, 828, 1123, 1306
DraI	TTTAAA	1 cut(s)	780
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	2 cut(s)	309, 894
Eam1104I	CTCTTC	1 cut(s)	1110
EarI	CTCTTC	1 cut(s)	1110
Eco130I	CCWWGG	2 cut(s)	583, 627
Eco24I	GRGCYC	2 cut(s)	124, 643
Eco32I	GATATC	2 cut(s)	1083, 1099
Eco47I	GGWCC	2 cut(s)	1061, 1151
Eco88I	CYCGRG	1 cut(s)	1271
EcoRII	CCWGG	4 cut(s)	1015, 1057, 1237, 1298
EcoRV	GATATC	2 cut(s)	1083, 1099
EcoT14I	CCWWGG	2 cut(s)	583, 627
EcoT38I	GRGCYC	2 cut(s)	124, 643
ErhI	CCWWGG	2 cut(s)	583, 627
FaeI	CATG	4 cut(s)	253, 631, 1000, 1262
FalI	AAGNNNNNCTT	4 cut(s)	703, 735, 922, 954
FaqI	GGGAC	2 cut(s)	535, 1239
FatI	CATG	4 cut(s)	249, 627, 996, 1258
FauI	CCCGC	1 cut(s)	1149
FokI	GGATG	1 cut(s)	3
FriOI	GRGCYC	2 cut(s)	124, 643
FspBI	CTAG	2 cut(s)	294, 1109
HaeIII	GGCC	5 cut(s)	145, 311, 896, 1053, 1270
Hin1II	CATG	4 cut(s)	253, 631, 1000, 1262
HindIII	AAGCTT	1 cut(s)	833
HinfI	GANTC	4 cut(s)	171, 615, 740, 965
HphI	GGTGA	2 cut(s)	1129, 1301
Hpy166II	GTNNAC	2 cut(s)	499, 1282
Hpy188I	TCNGA	7 cut(s)	27, 355, 445, 509, 601, 739, 1096
Hpy188III	TCNNGA	5 cut(s)	662, 1045, 1086, 1127, 1283
Hpy8I	GTNNAC	2 cut(s)	499, 1282
Hpy99I	CGWCG	4 cut(s)	292, 346, 355, 974
HpyAV	CCTTC	4 cut(s)	32, 400, 1144, 1191
HpyCH4III	ACNGT	6 cut(s)	11, 115, 396, 503, 565, 688
HpyCH4IV	ACGT	3 cut(s)	287, 545, 1007
HpyCH4V	TGCA	5 cut(s)	160, 275, 320, 390, 1075
HpyF10VI	GCNNNNNNNGC	6 cut(s)	157, 166, 281, 317, 944, 1028
HpyF3I	CTNAG	2 cut(s)	642, 736
HpySE526I	ACGT	3 cut(s)	287, 545, 1007
Hsp92II	CATG	4 cut(s)	253, 631, 1000, 1262
Kzo9I	GATC	4 cut(s)	445, 828, 1123, 1306
LmnI	GCTCC	3 cut(s)	127, 198, 509
Lsp1109I	GCAGC	6 cut(s)	252, 287, 317, 332, 335, 718
LweI	GCATC	2 cut(s)	1018, 1062
MaeI	CTAG	2 cut(s)	294, 1109
MaeII	ACGT	3 cut(s)	287, 545, 1007
MaeIII	GTNAC	2 cut(s)	840, 1045
MalI	GATC	4 cut(s)	447, 830, 1125, 1308
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	4 cut(s)	445, 828, 1123, 1306
MboII	GAAGA	7 cut(s)	107, 224, 347, 453, 512, 543, 1097
MfeI	CAATTG	1 cut(s)	810
MhlI	GDGCHC	3 cut(s)	124, 643, 1024
MluCI	AATT	9 cut(s)	98, 254, 424, 556, 726, 781, 810, 885, 980
MmeI	TCCRAC	5 cut(s)	333, 688, 742, 1225, 1284
MroXI	GAANNNNTTC	3 cut(s)	672, 889, 1290
MseI	TTAA	3 cut(s)	647, 779, 1321
MspA1I	CMGCKG	2 cut(s)	308, 326
MspR9I	CCNGG	4 cut(s)	1017, 1059, 1239, 1300
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	3 cut(s)	940, 1210, 1216
MvaI	CCWGG	4 cut(s)	1017, 1059, 1239, 1300
MwoI	GCNNNNNNNGC	6 cut(s)	157, 166, 281, 317, 944, 1028
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	4 cut(s)	445, 828, 1123, 1306
NlaIII	CATG	4 cut(s)	253, 631, 1000, 1262
NlaIV	GGNNCC	6 cut(s)	62, 123, 511, 595, 1002, 1054
NmuCI	GTSAC	1 cut(s)	1045
PasI	CCCWGGG	1 cut(s)	1016
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PctI	GAATGC	3 cut(s)	940, 1210, 1216
PdmI	GAANNNNTTC	3 cut(s)	672, 889, 1290
PfeI	GAWTC	4 cut(s)	171, 615, 740, 965
PflFI	GACNNNGTC	3 cut(s)	349, 547, 1251
PflMI	CCANNNNNTGG	1 cut(s)	1244
Psp6I	CCWGG	4 cut(s)	1015, 1057, 1237, 1298
PspGI	CCWGG	4 cut(s)	1015, 1057, 1237, 1298
PspN4I	GGNNCC	6 cut(s)	62, 123, 511, 595, 1002, 1054
PspPI	GGNCC	5 cut(s)	143, 1052, 1061, 1151, 1269
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	326
PsyI	GACNNNGTC	3 cut(s)	349, 547, 1251
PvuII	CAGCTG	1 cut(s)	326
SaqAI	TTAA	3 cut(s)	647, 779, 1321
Sau3AI	GATC	4 cut(s)	445, 828, 1123, 1306
Sau96I	GGNCC	5 cut(s)	143, 1052, 1061, 1151, 1269
ScrFI	CCNGG	4 cut(s)	1017, 1059, 1239, 1300
SduI	GDGCHC	3 cut(s)	124, 643, 1024
SfaNI	GCATC	2 cut(s)	1018, 1062
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	2 cut(s)	1061, 1151
Sse9I	AATT	9 cut(s)	98, 254, 424, 556, 726, 781, 810, 885, 980
SsiI	CCGC	5 cut(s)	146, 149, 166, 308, 1142
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	2 cut(s)	294, 1109
StyD4I	CCNGG	4 cut(s)	1015, 1057, 1237, 1298
StyI	CCWWGG	2 cut(s)	583, 627
TaaI	ACNGT	6 cut(s)	11, 115, 396, 503, 565, 688
TaiI	ACGT	3 cut(s)	290, 548, 1010
TaqI	TCGA	1 cut(s)	972
TasI	AATT	9 cut(s)	98, 254, 424, 556, 726, 781, 810, 885, 980
TauI	GCSGC	4 cut(s)	148, 151, 169, 311
TfiI	GAWTC	4 cut(s)	171, 615, 740, 965
Tru1I	TTAA	3 cut(s)	647, 779, 1321
Tru9I	TTAA	3 cut(s)	647, 779, 1321
TscAI	CASTG	3 cut(s)	138, 401, 530
TseFI	GTSAC	1 cut(s)	1045
TseI	GCWGC	6 cut(s)	240, 275, 305, 320, 323, 731
Tsp45I	GTSAC	1 cut(s)	1045
TspDTI	ATGAA	2 cut(s)	266, 812
TspGWI	ACGGA	1 cut(s)	958
TspRI	CASTG	3 cut(s)	138, 401, 530
Tth111I	GACNNNGTC	3 cut(s)	349, 547, 1251
Van91I	CCANNNNNTGG	1 cut(s)	1244
VpaK11BI	GGWCC	2 cut(s)	1061, 1151
XapI	RAATTY	1 cut(s)	254
XmnI	GAANNNNTTC	3 cut(s)	672, 889, 1290
XspI	CTAG	2 cut(s)	294, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.