Rmu_sc0023263.1_g000001

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023263.1
OG0015325
Physical Location & Seq
Forward (+)
1 .. 1398
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023263.1_g000001.1.cds

Sequence Viewer

Length: 710 bp
ataagccgataggcttttcatacaccatggagaaatgggctgagttaatcttggattttttggatgaagttgttcagaagcctactgttttaataggcaactctgtgggaagccttgcatgtgtaatctctgcctcagaatctagaaagggactggttcgagggctagtgcttttgaattgctctggtgggatgaataacaaggccattgttgatgattggaggatcaagctgcttttccctttgctcatgctaattgatttcttgttgaagcaacgacctattgcttccttcatttttgagcgtgttagacagagggaaagtttaagaaatatcttatcatctgtttacgccaacaaagaatctgtggatgacgaattagtagagatcataatggaaccaacaagtgacccaggtgcactggacgcttttgtctcaatcgtaacaggcccaccaggaccaaacccggtccagttaatgccaggcctctccctaccgattctagtcctatggggcgatgaagacccgttcactccactcgatgggcctgttggcaaatacttcacttccttaccttctcagaaatcgaatgtgagcctctccattttacaaggagttgggcactgcccccacgatgacaggcctatattggtccacgacaaacttcttccctggttggataatctttctatagaaaatccagttgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

235

Amino Acids

25.88

Weight (kDa)

4.89

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38520 AT5G38520
fragaria_vesca FvH4_2g37190
malus_domestica MD08G1001000.v1.1
prunus_persica Prupe.1G353100_v2.0.a1
pyrus_communis pycom08g00040
rosa_chinensis RchiOBHm_Chr6g0304501
rosa_laevigata RLG00000010971
rosa_multiflora Rmu_sc0023263.1_g000001 Rmu_ssc0000218.1_g000058
rosa_roxburghii Rroxscaffold_7G00163690
rosa_rugosa Rorug06G0332600
rosa_samantha Rh6AG445100 Rh6CG457900 Rh6DG444700
rosa_wichuraiana Rw6G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 430
AccB7I CCANNNNNTGG 1 cut(s) 541
AclWI GGATC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 541
AgsI TTSAA 2 cut(s) 177, 270
AjnI CCWGG 4 cut(s) 411, 453, 480, 670
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 438
Alw44I GTGCAC 1 cut(s) 416
AlwI GGATC 1 cut(s) 232
AoxI GGCC 5 cut(s) 203, 447, 483, 544, 640
ApaLI GTGCAC 1 cut(s) 416
ApeKI GCWGC 1 cut(s) 231
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 5 cut(s) 448, 457, 468, 544, 651
AsuC2I CCSGG 1 cut(s) 466
AvaII GGWCC 3 cut(s) 457, 468, 651
BaeGI GKGCMC 2 cut(s) 420, 623
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 535
BciT130I CCWGG 4 cut(s) 413, 455, 482, 672
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 3 cut(s) 143, 166, 502
BfmI CTRYAG 1 cut(s) 689
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 5 cut(s) 413, 455, 466, 482, 672
Bme18I GGWCC 3 cut(s) 457, 468, 651
BmgT120I GGNCC 5 cut(s) 448, 457, 468, 544, 651
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 5 cut(s) 413, 455, 466, 482, 672
BpiI GAAGAC 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 466
BsaJI CCNNGG 3 cut(s) 26, 411, 670
Bsc4I CCNNNNNNNGG 1 cut(s) 541
Bse1I ACTGG 4 cut(s) 158, 425, 471, 700
BseBI CCWGG 4 cut(s) 413, 455, 482, 672
BseDI CCNNGG 3 cut(s) 26, 411, 670
BseGI GGATG 3 cut(s) 69, 197, 375
BseLI CCNNNNNNNGG 1 cut(s) 541
BseMII CTCAG 3 cut(s) 32, 149, 592
BseNI ACTGG 4 cut(s) 158, 425, 471, 700
BseSI GKGCMC 2 cut(s) 420, 623
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 5 cut(s) 205, 449, 485, 546, 642
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 466
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 541
BsmAI GTCTC 1 cut(s) 438
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 5 cut(s) 205, 449, 485, 546, 642
Bsp1286I GDGCHC 2 cut(s) 420, 623
Bsp143I GATC 2 cut(s) 224, 386
Bsp19I CCATGG 1 cut(s) 26
BspANI GGCC 5 cut(s) 205, 449, 485, 546, 642
BspCNI CTCAG 3 cut(s) 33, 148, 591
BspLI GGNNCC 1 cut(s) 398
BspPI GGATC 1 cut(s) 232
BsrI ACTGG 4 cut(s) 158, 425, 471, 700
BssECI CCNNGG 3 cut(s) 26, 411, 670
BssMI GATC 2 cut(s) 224, 386
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 4 cut(s) 413, 455, 482, 672
Bst4CI ACNGT 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 41, 135, 578
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 3 cut(s) 69, 197, 375
BstKTI GATC 2 cut(s) 227, 389
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 2 cut(s) 224, 386
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstNI CCWGG 4 cut(s) 413, 455, 482, 672
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 5 cut(s) 411, 453, 464, 480, 670
BstSFI CTRYAG 1 cut(s) 689
BstSLI GKGCMC 2 cut(s) 420, 623
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 527
BsuRI GGCC 5 cut(s) 205, 449, 485, 546, 642
BtgI CCRYGG 1 cut(s) 26
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 3 cut(s) 69, 197, 375
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 2 cut(s) 418, 621
Cfr13I GGNCC 5 cut(s) 448, 457, 468, 544, 651
CseI GACGC 1 cut(s) 433
CviAII CATG 3 cut(s) 27, 119, 249
DdeI CTNAG 3 cut(s) 41, 135, 578
DpnI GATC 2 cut(s) 226, 388
DpnII GATC 2 cut(s) 224, 386
DrdI GACNNNNNNGTC 1 cut(s) 430
DseDI GACNNNNNNGTC 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 26
Eco147I AGGCCT 2 cut(s) 485, 642
Eco47I GGWCC 3 cut(s) 457, 468, 651
EcoRII CCWGG 4 cut(s) 411, 453, 480, 670
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 3 cut(s) 30, 122, 252
FaiI YATR 9 cut(s) 21, 28, 120, 250, 391, 510, 646, 691, 708
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 26, 118, 248
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 3 cut(s) 76, 204, 382
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 3 cut(s) 143, 166, 502
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 5 cut(s) 205, 449, 485, 546, 642
HapII CCGG 1 cut(s) 466
HgaI GACGC 1 cut(s) 433
Hin1II CATG 3 cut(s) 30, 122, 252
HinfI GANTC 3 cut(s) 139, 361, 498
HpaII CCGG 1 cut(s) 466
Hpy166II GTNNAC 4 cut(s) 348, 418, 530, 654
Hpy188I TCNGA 3 cut(s) 77, 138, 581
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 4 cut(s) 348, 418, 530, 654
HpyAV CCTTC 2 cut(s) 300, 584
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 118, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpyF3I CTNAG 3 cut(s) 41, 135, 578
Hsp92II CATG 3 cut(s) 30, 122, 252
Kzo9I GATC 2 cut(s) 224, 386
Lsp1109I GCAGC 1 cut(s) 218
MaeI CTAG 3 cut(s) 143, 166, 502
MaeIII GTNAC 2 cut(s) 406, 441
MalI GATC 2 cut(s) 226, 388
MboI GATC 2 cut(s) 224, 386
MboII GAAGA 2 cut(s) 532, 658
MhlI GDGCHC 2 cut(s) 420, 623
MluCI AATT 3 cut(s) 177, 254, 376
MmeI TCCRAC 1 cut(s) 656
MnlI CCTC 6 cut(s) 144, 154, 215, 308, 496, 607
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 4 cut(s) 46, 91, 325, 475
MspI CCGG 1 cut(s) 466
MspR9I CCNGG 5 cut(s) 413, 455, 466, 482, 672
MvaI CCWGG 4 cut(s) 413, 455, 482, 672
MwoI GCNNNNNNNGC 1 cut(s) 424
NciI CCSGG 1 cut(s) 466
NcoI CCATGG 1 cut(s) 26
NdeII GATC 2 cut(s) 224, 386
NlaIII CATG 3 cut(s) 30, 122, 252
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 1 cut(s) 122
PceI AGGCCT 2 cut(s) 485, 642
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 3 cut(s) 139, 361, 498
PflMI CCANNNNNTGG 1 cut(s) 541
PkrI GCNGC 1 cut(s) 233
Psp6I CCWGG 4 cut(s) 411, 453, 480, 670
PspGI CCWGG 4 cut(s) 411, 453, 480, 670
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 5 cut(s) 448, 457, 468, 544, 651
SaqAI TTAA 4 cut(s) 46, 91, 325, 475
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 2 cut(s) 224, 386
Sau96I GGNCC 5 cut(s) 448, 457, 468, 544, 651
ScrFI CCNGG 5 cut(s) 413, 455, 466, 482, 672
SduI GDGCHC 2 cut(s) 420, 623
SetI ASST 4 cut(s) 233, 282, 417, 576
SfcI CTRYAG 1 cut(s) 689
SinI GGWCC 3 cut(s) 457, 468, 651
Sse9I AATT 3 cut(s) 177, 254, 376
SseBI AGGCCT 2 cut(s) 485, 642
SspMI CTAG 3 cut(s) 143, 166, 502
StuI AGGCCT 2 cut(s) 485, 642
StyD4I CCNGG 5 cut(s) 411, 453, 464, 480, 670
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 159, 539, 586
TasI AATT 3 cut(s) 177, 254, 376
TfiI GAWTC 3 cut(s) 139, 361, 498
Tru1I TTAA 4 cut(s) 46, 91, 325, 475
Tru9I TTAA 4 cut(s) 46, 91, 325, 475
TscAI CASTG 2 cut(s) 425, 628
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 5 cut(s) 8, 80, 208, 282, 533
TspRI CASTG 2 cut(s) 425, 628
Van91I CCANNNNNTGG 1 cut(s) 541
VneI GTGCAC 1 cut(s) 416
VpaK11BI GGWCC 3 cut(s) 457, 468, 651
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 3 cut(s) 143, 166, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.