RLG00000010971

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015325
Physical Location & Seq
Forward (+)
5768448 .. 5770521
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010971

Sequence Viewer

Length: 1200 bp
ATGGGGGTGACGGTAATATCTCCCCATTCATTGCCACAATATTTGCATTTACAGCAGTCGATACCAAACCAGAAAGCAGTAAAAACTAGATGTTTGCTTAGCTATGGTGGACGAGGACGAGTTTTGCTTGGTCAAAATAACCATCCAGACCCGACCACCGTTAATAGTATCACTACTCTTCCCGCCATGAAACTTAACTCATCATCATCTAGTATTGCAGCAGAGGCAACTAGTACTGGTGCCGCGGCCGCCGCCGACGATTTAGTGTTGGAATTGGAGCTGGGAGAGATTAAGGACAAGTACATGAAGTGGAAGTGGAAGGGTCAGTACGCCATCAACTACGTCGTTTCACATCCAGAAGATGCAAATCCGAATCCAAATGCTCCTCCTATTCTTCTTGTTCACGGCTTCGGCGCCTCCGTTCCTCACTGGCGCAGAAATATTAAGACATTGGCGAAGAATTATACAGTTTATGCTATTGACCTGATTGGCTTTGGTGCCTCAGATAAGCCGATAGGCTTTTCATACACCATGGAGAAATGGGCTGAGTTAATCTTGGATTTTTTGGATGAAGTTGTTCAGAAGCCTACTGTTTTGATAGGCAACTCTGTGGGAAGCCTTGCATGTGTAATCTCTGCCTCAGAATCTAAAAAGGGACTGGTTCGAGGGCTAGTGCTTTTAAATTGCTCTGGTGGGATGAATAACAAGGCCATTGTTGATGATTGGAGGATCAAGCTGCTCTTCCCTTTGCTCTTGCTAATTGATTTCTTGTTGAAGCAACGACCTATTGCTTCCTTCATTTTTGAGCGTGTTAGACAGCGGAAAAGTTTAAGAAATATCTTATCATCTGTTTACGCCAACAAAGAATCTGTGGATGACGAATTAGTAGAGATCATAATGGAACCAACAAGTGACCCAGGTGCACTGGACGCGTTTGTCTCAATAGTCACAGGCCCACCAGGACCAAACCCGGTCCAGTTGATGCCGGGCCTCTCCCTACCGATTCTAGTCTTATGGGGCGATGAAGACCCGTTCACTCCGCTTGATGGGCCTGTTGGCAAATACTTCACTTCCTTACCTTCTCAGAAATCGAATGTGAGCCTCTCCATTTTACAAGGAGTTGGGCACTGCCCCCACGATGACAGGCCCAAGTTGGTCCACGACAAACTTCTTCCTTGGTTGGATAATCTTTCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

400

Amino Acids

43.6

Weight (kDa)

6.76

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 129 - 383 1.9e-24 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 131 - 387 8.2e-21 Alpha/beta hydrolase family
Hydrolase_4 PF12146 131 - 381 1.2e-10 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38520 AT5G38520
fragaria_vesca FvH4_2g37190
malus_domestica MD08G1001000.v1.1
prunus_persica Prupe.1G353100_v2.0.a1
pyrus_communis pycom08g00040
rosa_chinensis RchiOBHm_Chr6g0304501
rosa_laevigata RLG00000010971
rosa_multiflora Rmu_sc0023263.1_g000001 Rmu_ssc0000218.1_g000058
rosa_roxburghii Rroxscaffold_7G00163690
rosa_rugosa Rorug06G0332600
rosa_samantha Rh6AG445100 Rh6CG457900 Rh6DG444700
rosa_wichuraiana Rw6G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 935
AccB1I GGYRCC 3 cut(s) 239, 413, 497
AccII CGCG 2 cut(s) 245, 932
AciI CCGC 7 cut(s) 183, 243, 245, 249, 252, 820, 1040
AclWI GGATC 1 cut(s) 737
AcoI YGGCCR 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 3 cut(s) 235, 302, 329
AfiI CCNNNNNNNGG 1 cut(s) 1046
AflIII ACRYGT 1 cut(s) 930
AgsI TTSAA 1 cut(s) 775
AhlI ACTAGT 1 cut(s) 230
AjnI CCWGG 2 cut(s) 916, 958
AluBI AGCT 3 cut(s) 102, 280, 736
AluI AGCT 3 cut(s) 102, 280, 736
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 1 cut(s) 943
Alw44I GTGCAC 1 cut(s) 921
AlwI GGATC 1 cut(s) 737
AoxI GGCC 6 cut(s) 246, 708, 952, 988, 1049, 1145
ApaLI GTGCAC 1 cut(s) 921
ApeKI GCWGC 2 cut(s) 218, 736
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 2 cut(s) 416, 435
AspS9I GGNCC 7 cut(s) 953, 962, 973, 988, 1049, 1146, 1156
AsuC2I CCSGG 2 cut(s) 971, 987
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 3 cut(s) 962, 973, 1156
BaeGI GKGCMC 2 cut(s) 925, 1128
BanI GGYRCC 3 cut(s) 239, 413, 497
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BbsI GAAGAC 1 cut(s) 1032
Bbv12I GWGCWC 1 cut(s) 925
BbvI GCAGC 2 cut(s) 230, 723
BccI CCATC 3 cut(s) 150, 341, 1040
BceAI ACGGC 1 cut(s) 421
BciT130I CCWGG 2 cut(s) 918, 960
BcnI CCSGG 2 cut(s) 971, 987
BcoDI GTCTC 1 cut(s) 943
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 5 cut(s) 87, 210, 231, 671, 1007
BfoI RGCGCY 1 cut(s) 417
BisI GCNGC 6 cut(s) 219, 243, 246, 249, 252, 737
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 6 cut(s) 220, 244, 247, 250, 253, 738
BmcAI AGTACT 1 cut(s) 235
Bme1390I CCNGG 4 cut(s) 918, 960, 971, 987
Bme18I GGWCC 3 cut(s) 962, 973, 1156
BmgT120I GGNCC 7 cut(s) 953, 962, 973, 988, 1049, 1146, 1156
BmiI GGNNCC 4 cut(s) 241, 415, 499, 903
BmrFI CCNGG 4 cut(s) 918, 960, 971, 987
BmsI GCATC 2 cut(s) 352, 972
BpiI GAAGAC 1 cut(s) 1032
Bpu1102I GCTNAGC 1 cut(s) 98
BpuMI CCSGG 2 cut(s) 971, 987
BsaBI GATNNNNATC 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 4 cut(s) 243, 531, 916, 1175
Bsc4I CCNNNNNNNGG 1 cut(s) 1046
Bse1I ACTGG 5 cut(s) 241, 434, 663, 930, 976
Bse3DI GCAATG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 2 cut(s) 918, 960
BseDI CCNNGG 4 cut(s) 243, 531, 916, 1175
BseGI GGATG 5 cut(s) 142, 352, 574, 702, 880
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 1046
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 4 cut(s) 516, 537, 654, 1097
BseNI ACTGG 5 cut(s) 241, 434, 663, 930, 976
BseRI GAGGAG 1 cut(s) 375
BseSI GKGCMC 2 cut(s) 925, 1128
BseX3I CGGCCG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 230, 723
BseYI CCCAGC 1 cut(s) 280
Bsh1236I CGCG 2 cut(s) 245, 932
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 6 cut(s) 248, 710, 954, 990, 1051, 1147
BshNI GGYRCC 3 cut(s) 239, 413, 497
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 925
BsiSI CCGG 2 cut(s) 971, 986
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 1 cut(s) 1046
BsmAI GTCTC 1 cut(s) 943
BsmFI GGGAC 1 cut(s) 669
BsnI GGCC 6 cut(s) 248, 710, 954, 990, 1051, 1147
Bsp1286I GDGCHC 2 cut(s) 925, 1128
Bsp143I GATC 2 cut(s) 729, 891
Bsp1720I GCTNAGC 1 cut(s) 98
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 7 cut(s) 183, 243, 245, 249, 252, 820, 1040
BspANI GGCC 6 cut(s) 248, 710, 954, 990, 1051, 1147
BspCNI CTCAG 4 cut(s) 515, 538, 653, 1096
BspFNI CGCG 2 cut(s) 245, 932
BspLI GGNNCC 4 cut(s) 241, 415, 499, 903
BspPI GGATC 1 cut(s) 737
BspQI GCTCTTC 1 cut(s) 746
BspT107I GGYRCC 3 cut(s) 239, 413, 497
BsrDI GCAATG 1 cut(s) 29
BsrI ACTGG 5 cut(s) 241, 434, 663, 930, 976
BssECI CCNNGG 4 cut(s) 243, 531, 916, 1175
BssMI GATC 2 cut(s) 729, 891
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 2 cut(s) 531, 1175
Bst2UI CCWGG 2 cut(s) 918, 960
Bst4CI ACNGT 4 cut(s) 13, 160, 469, 592
Bst6I CTCTTC 2 cut(s) 183, 746
BstACI GRCGYC 1 cut(s) 414
BstDEI CTNAG 5 cut(s) 98, 502, 546, 640, 1083
BstDSI CCRYGG 2 cut(s) 243, 531
BstF5I GGATG 5 cut(s) 142, 352, 574, 702, 880
BstFNI CGCG 2 cut(s) 245, 932
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 2 cut(s) 416, 435
BstKTI GATC 2 cut(s) 732, 894
BstMAI GTCTC 1 cut(s) 943
BstMBI GATC 2 cut(s) 729, 891
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 6 cut(s) 52, 224, 248, 251, 929, 1048
BstNI CCWGG 2 cut(s) 918, 960
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 4 cut(s) 916, 958, 969, 985
BstSLI GKGCMC 2 cut(s) 925, 1128
BstUI CGCG 2 cut(s) 245, 932
BstV1I GCAGC 2 cut(s) 230, 723
BstV2I GAAGAC 1 cut(s) 1032
BstZI CGGCCG 1 cut(s) 246
BsuRI GGCC 6 cut(s) 248, 710, 954, 990, 1051, 1147
BtgI CCRYGG 2 cut(s) 243, 531
BtgZI GCGATG 1 cut(s) 1035
BtsCI GGATG 5 cut(s) 142, 352, 574, 702, 880
BtsI GCAGTG 1 cut(s) 1126
BtsIMutI CAGTG 3 cut(s) 427, 923, 1126
CciNI GCGGCCGC 1 cut(s) 246
CfoI GCGC 2 cut(s) 416, 435
Cfr13I GGNCC 7 cut(s) 953, 962, 973, 988, 1049, 1146, 1156
Cfr42I CCGCGG 1 cut(s) 246
CseI GACGC 1 cut(s) 938
Csp6I GTAC 3 cut(s) 234, 301, 328
CspCI CAANNNNNGTGG 2 cut(s) 24, 59
CviAII CATG 4 cut(s) 187, 304, 532, 624
CviQI GTAC 3 cut(s) 234, 301, 328
DdeI CTNAG 5 cut(s) 98, 502, 546, 640, 1083
DinI GGCGCC 1 cut(s) 415
DpnI GATC 2 cut(s) 731, 893
DpnII GATC 2 cut(s) 729, 891
DraI TTTAAA 1 cut(s) 681
DrdI GACNNNNNNGTC 1 cut(s) 935
DseDI GACNNNNNNGTC 1 cut(s) 935
EaeI YGGCCR 1 cut(s) 246
EagI CGGCCG 1 cut(s) 246
Eam1104I CTCTTC 2 cut(s) 183, 746
EarI CTCTTC 2 cut(s) 183, 746
EclXI CGGCCG 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 531, 1175
Eco47I GGWCC 3 cut(s) 962, 973, 1156
Eco52I CGGCCG 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 916, 958
EcoT14I CCWWGG 2 cut(s) 531, 1175
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
ErhI CCWWGG 2 cut(s) 531, 1175
FaeI CATG 4 cut(s) 190, 307, 535, 627
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FaqI GGGAC 1 cut(s) 669
FatI CATG 4 cut(s) 186, 303, 531, 623
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 6 cut(s) 219, 243, 246, 249, 252, 737
FokI GGATG 5 cut(s) 129, 339, 581, 709, 887
Fsp4HI GCNGC 6 cut(s) 219, 243, 246, 249, 252, 737
FspBI CTAG 5 cut(s) 87, 210, 231, 671, 1007
GlaI GCGC 2 cut(s) 415, 434
GluI GCNGC 6 cut(s) 219, 243, 246, 249, 252, 737
GsaI CCCAGC 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 6 cut(s) 248, 710, 954, 990, 1051, 1147
HapII CCGG 2 cut(s) 971, 986
HgaI GACGC 1 cut(s) 938
HhaI GCGC 2 cut(s) 416, 435
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 4 cut(s) 190, 307, 535, 627
Hin6I GCGC 2 cut(s) 414, 433
HinP1I GCGC 2 cut(s) 414, 433
HinfI GANTC 4 cut(s) 373, 644, 866, 1003
HpaII CCGG 2 cut(s) 971, 986
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 6 cut(s) 110, 403, 853, 923, 1035, 1159
Hpy188I TCNGA 5 cut(s) 372, 505, 582, 643, 1086
Hpy188III TCNNGA 2 cut(s) 146, 356
Hpy8I GTNNAC 6 cut(s) 110, 403, 853, 923, 1035, 1159
Hpy99I CGWCG 2 cut(s) 260, 347
HpyAV CCTTC 3 cut(s) 313, 805, 1089
HpyCH4III ACNGT 4 cut(s) 13, 160, 469, 592
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 5 cut(s) 46, 218, 365, 623, 923
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 224, 248, 251, 929, 1048
HpyF3I CTNAG 5 cut(s) 98, 502, 546, 640, 1083
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 4 cut(s) 190, 307, 535, 627
HspAI GCGC 2 cut(s) 414, 433
KasI GGCGCC 1 cut(s) 413
KspI CCGCGG 1 cut(s) 246
Kzo9I GATC 2 cut(s) 729, 891
LguI GCTCTTC 1 cut(s) 746
LmnI GCTCC 2 cut(s) 277, 388
Lsp1109I GCAGC 2 cut(s) 230, 723
LweI GCATC 2 cut(s) 352, 972
MaeI CTAG 5 cut(s) 87, 210, 231, 671, 1007
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 3 cut(s) 7, 911, 946
MalI GATC 2 cut(s) 731, 893
MboI GATC 2 cut(s) 729, 891
MboII GAAGA 7 cut(s) 170, 371, 386, 469, 733, 1037, 1163
MhlI GDGCHC 2 cut(s) 925, 1128
MluCI AATT 5 cut(s) 272, 460, 682, 759, 881
MluI ACGCGT 1 cut(s) 930
Mly113I GGCGCC 1 cut(s) 414
MmeI TCCRAC 2 cut(s) 249, 1161
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 8 cut(s) 162, 195, 291, 444, 551, 680, 830, 1198
MspA1I CMGCKG 2 cut(s) 245, 820
MspI CCGG 2 cut(s) 971, 986
MspR9I CCNGG 4 cut(s) 918, 960, 971, 987
MvaI CCWGG 2 cut(s) 918, 960
MvnI CGCG 2 cut(s) 245, 932
MwoI GCNNNNNNNGC 6 cut(s) 52, 224, 248, 251, 929, 1048
NarI GGCGCC 1 cut(s) 414
NciI CCSGG 2 cut(s) 971, 987
NcoI CCATGG 1 cut(s) 531
NdeII GATC 2 cut(s) 729, 891
NlaIII CATG 4 cut(s) 190, 307, 535, 627
NlaIV GGNNCC 4 cut(s) 241, 415, 499, 903
NmuCI GTSAC 3 cut(s) 7, 911, 946
NotI GCGGCCGC 1 cut(s) 246
NspI RCATGY 1 cut(s) 627
PciSI GCTCTTC 1 cut(s) 746
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 4 cut(s) 373, 644, 866, 1003
PkrI GCNGC 6 cut(s) 220, 244, 247, 250, 253, 738
PluTI GGCGCC 1 cut(s) 417
Psp6I CCWGG 2 cut(s) 916, 958
PspFI CCCAGC 1 cut(s) 280
PspGI CCWGG 2 cut(s) 916, 958
PspN4I GGNNCC 4 cut(s) 241, 415, 499, 903
PspPI GGNCC 7 cut(s) 953, 962, 973, 988, 1049, 1146, 1156
RsaI GTAC 3 cut(s) 235, 302, 329
RsaNI GTAC 3 cut(s) 234, 301, 328
SacII CCGCGG 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 746
SaqAI TTAA 8 cut(s) 162, 195, 291, 444, 551, 680, 830, 1198
SatI GCNGC 6 cut(s) 219, 243, 246, 249, 252, 737
Sau3AI GATC 2 cut(s) 729, 891
Sau96I GGNCC 7 cut(s) 953, 962, 973, 988, 1049, 1146, 1156
ScaI AGTACT 1 cut(s) 235
ScrFI CCNGG 4 cut(s) 918, 960, 971, 987
SduI GDGCHC 2 cut(s) 925, 1128
SetI ASST 8 cut(s) 104, 282, 345, 486, 738, 787, 922, 1081
SfaNI GCATC 2 cut(s) 352, 972
SfoI GGCGCC 1 cut(s) 415
Sfr303I CCGCGG 1 cut(s) 246
SgrBI CCGCGG 1 cut(s) 246
SinI GGWCC 3 cut(s) 962, 973, 1156
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 5 cut(s) 272, 460, 682, 759, 881
SsiI CCGC 7 cut(s) 183, 243, 245, 249, 252, 820, 1040
SspDI GGCGCC 1 cut(s) 413
SspI AATATT 2 cut(s) 41, 442
SspMI CTAG 5 cut(s) 87, 210, 231, 671, 1007
StyD4I CCNGG 4 cut(s) 916, 958, 969, 985
StyI CCWWGG 2 cut(s) 531, 1175
TaaI ACNGT 4 cut(s) 13, 160, 469, 592
TaiI ACGT 1 cut(s) 345
TaqI TCGA 3 cut(s) 59, 664, 1091
TasI AATT 5 cut(s) 272, 460, 682, 759, 881
TatI WGTACW 2 cut(s) 233, 300
TauI GCSGC 4 cut(s) 245, 248, 251, 254
TfiI GAWTC 4 cut(s) 373, 644, 866, 1003
Tru1I TTAA 8 cut(s) 162, 195, 291, 444, 551, 680, 830, 1198
Tru9I TTAA 8 cut(s) 162, 195, 291, 444, 551, 680, 830, 1198
TscAI CASTG 3 cut(s) 434, 930, 1133
TseFI GTSAC 3 cut(s) 7, 911, 946
TseI GCWGC 2 cut(s) 218, 736
Tsp45I GTSAC 3 cut(s) 7, 911, 946
TspDTI ATGAA 8 cut(s) 18, 203, 320, 513, 585, 713, 787, 1038
TspGWI ACGGA 1 cut(s) 409
TspRI CASTG 3 cut(s) 434, 930, 1133
VneI GTGCAC 1 cut(s) 921
VpaK11BI GGWCC 3 cut(s) 962, 973, 1156
XceI RCATGY 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 5 cut(s) 87, 210, 231, 671, 1007
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.