Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008582

Physical Location & Seq

Genomic Coordinates Forward (+)

6165077 .. 6172967

Gene Structure 7891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1075600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGATTCAAAAGACAATACGCTTTCATAAGTTGGTTCGGTCTCTTGGAGTGGGTTCTTCTTTATCTCCATCATTCAAGAATCTTGGAGTTTACTGTTGCTTCGGATCTGTAGCTAAATCGAATGCAGAACAAGCATGTGATCCATTTGAATACAGCTATGATCTTGATAAGCATGAGTATGCTGATGTAGATTGGGACAATCTCGGATTTGGTTTAGTGCGAACTGATTACATGTACATTATCAAAACTTCCAACGACGGGAAATTTGAAGAAGGCCAACTTAGTCGTTATGGAAATATCGAACTTAACCCTGCTGCAGCAGTTTTAAATTATGGACAGGCAATATATGAAGGCACAAAAGCATACAGGAAGAGAGATGGGAAACTCCTCCTCTTTCGTCTAGACCAGAATGCGATGCGGATGAAGATTAGCGCGGAAAGAATGTGCATGCCTTCACTGTCAGTTGATCAATTCATTGATGCTGTAAAGCAAACAGCTCAAGCAAACAAGTGTTGGGTTCCTCCTCCAGGCAAAGGGTCTTTGTATATTAGGCCTCTACTTATAGGAAGTGGCCCCATATTAGGCTTGGCACCATCACCTGAGTACACATTCCTTGTATATGCTTCCCCGGTCAGAAATTATTTCAAGGAGGGCTCTGCACCCTTGAACGTATTTGTCGAGGAGGAGTATGATCGTGCCTCTCGTGGCGGAGCTGGAGGTGTCAAAAGCAGTACCAATTATGCCCCGGTTTTGAAGGCACTAACCAGAGCAAAAAGCAGGGGATTTTCGGATGTTCTATATCTCGATTCGGTACACAAGAAAAATCTGGAGGAGGTCTCTTCTTGCAACATTTTTATTGTGAAAGGCAATATAATTTCAACTCCTGCCACGTCGGGGACTATTCTTTCGGGAGTTACTCGAAAAAGCGTTATTGAAATAGCTCGTGATCATGGTTACCAGGTCGAGGAACGTGTTATTCCGGTGGACGAATTGAGTGAAGCCGATGAAGTGTTCTGCACTGGAACTGCTGTTGGTGTTGCTCCAGTGGGCAGCATTACTTACAAAGGCCAAAGGATGGAGTACAAAACGGGTGCTGAGACTGTATGTCCACAACTTTACTCAACCCTAGTAGGAATTCAAACGGGACAGATTGAGGATAAGAAAGGCTGGATTATGGAAATCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071669

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

396

Amino Acids

43.52

Weight (kDa)

6.9

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	115 - 352	6.9e-38	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10070 AT1G10070 AT1G10070
fragaria_vesca	FvH4_2g32430
malus_domestica	MD08G1075600.v1.1 MD15G1063100.v1.1
prunus_persica	Prupe.1G417100_v2.0.a1
pyrus_communis	pycom08g06240 pycom15g05970
rosa_chinensis	RchiOBHm_Chr3g0458081 RchiOBHm_Chr6g0310241
rosa_laevigata	RLG00000010496
rosa_multiflora	Rmu_sc0002348.1_g000024 Rmu_sc0008163.1_g000019
rosa_roxburghii	Rroxscaffold_7G00158710
rosa_rugosa	Rorug06G0378400
rosa_samantha	Rh3BG088200 Rh3CG088800 Rh3DG089100 Rh6AG492600 Rh6DG493400
rosa_wichuraiana	Rw3G007260 Rw6G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AccB7I	CCANNNNNTGG	1 cut(s)	1075
AccII	CGCG	1 cut(s)	434
AciI	CCGC	3 cut(s)	418, 434, 708
AclWI	GGATC	2 cut(s)	112, 134
AcsI	RAATTY	2 cut(s)	263, 1134
AfaI	GTAC	5 cut(s)	236, 605, 733, 813, 1082
AfiI	CCNNNNNNNGG	7 cut(s)	258, 527, 533, 581, 894, 964, 1075
AflIII	ACRYGT	2 cut(s)	231, 970
AhdI	GACNNNNNGTC	1 cut(s)	1104
AjiI	CACGTC	1 cut(s)	891
AjnI	CCWGG	2 cut(s)	526, 957
AluBI	AGCT	5 cut(s)	113, 156, 497, 713, 941
AluI	AGCT	5 cut(s)	113, 156, 497, 713, 941
Alw26I	GTCTC	3 cut(s)	45, 841, 1091
AlwI	GGATC	2 cut(s)	112, 134
AoxI	GGCC	4 cut(s)	274, 551, 571, 1066
ApeKI	GCWGC	3 cut(s)	314, 317, 1050
ApoI	RAATTY	2 cut(s)	263, 1134
ArsI	GACNNNNNNTTYG	4 cut(s)	248, 280, 889, 921
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	572
AsuC2I	CCSGG	2 cut(s)	629, 746
AsuHPI	GGTGA	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	656
BauI	CACGAG	2 cut(s)	702, 942
BbvI	GCAGC	3 cut(s)	301, 329, 1062
BccI	CCATC	4 cut(s)	76, 371, 601, 1069
BciT130I	CCWGG	2 cut(s)	528, 959
BclI	TGATCA	2 cut(s)	466, 946
BcnI	CCSGG	2 cut(s)	629, 746
BcoDI	GTCTC	3 cut(s)	45, 841, 1091
BfaI	CTAG	2 cut(s)	401, 1127
BfmI	CTRYAG	2 cut(s)	108, 315
BisI	GCNGC	3 cut(s)	315, 318, 1051
BlsI	GCNGC	3 cut(s)	316, 319, 1052
Bme1390I	CCNGG	4 cut(s)	528, 629, 746, 959
BmeRI	GACNNNNNGTC	1 cut(s)	1104
BmgBI	CACGTC	1 cut(s)	891
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	3 cut(s)	519, 574, 591
BmrFI	CCNGG	4 cut(s)	528, 629, 746, 959
BmsI	GCATC	2 cut(s)	405, 469
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
BpmI	CTGGAG	4 cut(s)	510, 735, 848, 1026
BpuEI	CTTGAG	1 cut(s)	483
BpuMI	CCSGG	2 cut(s)	629, 746
BsaI	GGTCTC	2 cut(s)	45, 841
BsaJI	CCNNGG	2 cut(s)	627, 744
BsaWI	WCCGGW	1 cut(s)	979
Bsc4I	CCNNNNNNNGG	7 cut(s)	258, 527, 533, 581, 894, 964, 1075
Bse1I	ACTGG	2 cut(s)	1024, 1043
BseBI	CCWGG	2 cut(s)	528, 959
BseDI	CCNNGG	2 cut(s)	627, 744
BseGI	GGATG	3 cut(s)	426, 796, 1080
BseLI	CCNNNNNNNGG	7 cut(s)	258, 527, 533, 581, 894, 964, 1075
BseMII	CTCAG	2 cut(s)	591, 1086
BseNI	ACTGG	2 cut(s)	1024, 1043
BseRI	GAGGAG	6 cut(s)	377, 380, 513, 695, 698, 845
BseXI	GCAGC	3 cut(s)	301, 329, 1062
BsgI	GTGCAG	2 cut(s)	642, 1000
Bsh1236I	CGCG	1 cut(s)	434
BshFI	GGCC	4 cut(s)	276, 553, 573, 1068
BshNI	GGYRCC	1 cut(s)	589
BsiSI	CCGG	3 cut(s)	629, 746, 980
BslFI	GGGAC	3 cut(s)	209, 910, 1158
BslI	CCNNNNNNNGG	7 cut(s)	258, 527, 533, 581, 894, 964, 1075
BsmAI	GTCTC	3 cut(s)	45, 841, 1091
BsmFI	GGGAC	3 cut(s)	209, 910, 1158
BsmI	GAATGC	2 cut(s)	127, 415
BsnI	GGCC	4 cut(s)	276, 553, 573, 1068
Bso31I	GGTCTC	2 cut(s)	45, 841
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	6 cut(s)	104, 139, 160, 466, 691, 946
BspACI	CCGC	3 cut(s)	418, 434, 708
BspANI	GGCC	4 cut(s)	276, 553, 573, 1068
BspCNI	CTCAG	2 cut(s)	592, 1087
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	3 cut(s)	519, 574, 591
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	2 cut(s)	112, 134
BspT107I	GGYRCC	1 cut(s)	589
BspTNI	GGTCTC	2 cut(s)	45, 841
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	1024, 1043
BssECI	CCNNGG	2 cut(s)	627, 744
BssMI	GATC	6 cut(s)	104, 139, 160, 466, 691, 946
BssSI	CACGAG	2 cut(s)	702, 942
Bst2BI	CACGAG	2 cut(s)	702, 942
Bst2UI	CCWGG	2 cut(s)	528, 959
Bst4CI	ACNGT	3 cut(s)	95, 459, 1102
Bst6I	CTCTTC	2 cut(s)	365, 844
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	3 cut(s)	281, 600, 1095
BstEII	GGTNACC	1 cut(s)	953
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	3 cut(s)	426, 796, 1080
BstFNI	CGCG	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	6 cut(s)	107, 142, 163, 469, 694, 949
BstMAI	GTCTC	3 cut(s)	45, 841, 1091
BstMBI	GATC	6 cut(s)	104, 139, 160, 466, 691, 946
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	2 cut(s)	528, 959
BstNSI	RCATGY	3 cut(s)	138, 235, 451
BstPI	GGTNACC	1 cut(s)	953
BstSCI	CCNGG	4 cut(s)	526, 627, 744, 957
BstSFI	CTRYAG	2 cut(s)	108, 315
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	301, 329, 1062
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	4 cut(s)	276, 553, 573, 1068
BtgZI	GCGATG	1 cut(s)	428
BtrI	CACGTC	1 cut(s)	891
BtsCI	GGATG	3 cut(s)	426, 796, 1080
BtsIMutI	CAGTG	3 cut(s)	455, 1017, 1050
Cac8I	GCNNGC	1 cut(s)	449
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	957
Csp6I	GTAC	5 cut(s)	235, 604, 732, 812, 1081
CviAII	CATG	5 cut(s)	135, 173, 232, 448, 950
CviQI	GTAC	5 cut(s)	235, 604, 732, 812, 1081
DdeI	CTNAG	3 cut(s)	281, 600, 1095
DpnI	GATC	6 cut(s)	106, 141, 162, 468, 693, 948
DpnII	GATC	6 cut(s)	104, 139, 160, 466, 691, 946
DraI	TTTAAA	1 cut(s)	327
DriI	GACNNNNNGTC	1 cut(s)	1104
Eam1104I	CTCTTC	2 cut(s)	365, 844
Eam1105I	GACNNNNNGTC	1 cut(s)	1104
EarI	CTCTTC	2 cut(s)	365, 844
EciI	GGCGGA	1 cut(s)	723
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	656
Eco31I	GGTCTC	2 cut(s)	45, 841
Eco91I	GGTNACC	1 cut(s)	953
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoO65I	GGTNACC	1 cut(s)	953
EcoRI	GAATTC	1 cut(s)	1134
EcoRII	CCWGG	2 cut(s)	526, 957
EcoT38I	GRGCYC	1 cut(s)	656
FaeI	CATG	5 cut(s)	138, 176, 235, 451, 953
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	3 cut(s)	209, 910, 1158
FatI	CATG	5 cut(s)	134, 172, 231, 447, 949
FbaI	TGATCA	2 cut(s)	466, 946
Fnu4HI	GCNGC	3 cut(s)	315, 318, 1051
FokI	GGATG	3 cut(s)	433, 803, 1087
FriOI	GRGCYC	1 cut(s)	656
Fsp4HI	GCNGC	3 cut(s)	315, 318, 1051
FspBI	CTAG	2 cut(s)	401, 1127
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	3 cut(s)	315, 318, 1051
GsuI	CTGGAG	4 cut(s)	510, 735, 848, 1026
HaeIII	GGCC	4 cut(s)	276, 553, 573, 1068
HapII	CCGG	3 cut(s)	629, 746, 980
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	5 cut(s)	138, 176, 235, 451, 953
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	3 cut(s)	4, 79, 806
HpaII	CCGG	3 cut(s)	629, 746, 980
HphI	GGTGA	1 cut(s)	588
Hpy166II	GTNNAC	5 cut(s)	91, 606, 814, 985, 1109
Hpy188I	TCNGA	4 cut(s)	104, 206, 635, 790
Hpy188III	TCNNGA	7 cut(s)	76, 164, 401, 803, 827, 909, 944
Hpy8I	GTNNAC	5 cut(s)	91, 606, 814, 985, 1109
Hpy99I	CGWCG	2 cut(s)	260, 895
HpyAV	CCTTC	4 cut(s)	266, 344, 462, 748
HpyCH4III	ACNGT	3 cut(s)	95, 459, 1102
HpyCH4IV	ACGT	3 cut(s)	669, 890, 970
HpyCH4V	TGCA	6 cut(s)	125, 317, 447, 659, 846, 1017
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	281, 600, 1095
HpySE526I	ACGT	3 cut(s)	669, 890, 970
Hsp92II	CATG	5 cut(s)	138, 176, 235, 451, 953
HspAI	GCGC	1 cut(s)	432
Ksp22I	TGATCA	2 cut(s)	466, 946
Kzo9I	GATC	6 cut(s)	104, 139, 160, 466, 691, 946
LmnI	GCTCC	2 cut(s)	710, 1045
Lsp1109I	GCAGC	3 cut(s)	301, 329, 1062
LweI	GCATC	2 cut(s)	405, 469
MabI	ACCWGGT	1 cut(s)	957
MaeI	CTAG	2 cut(s)	401, 1127
MaeII	ACGT	3 cut(s)	669, 890, 970
MaeIII	GTNAC	2 cut(s)	913, 953
MalI	GATC	6 cut(s)	106, 141, 162, 468, 693, 948
MboI	GATC	6 cut(s)	104, 139, 160, 466, 691, 946
MboII	GAAGA	5 cut(s)	48, 281, 382, 436, 831
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	656
MluCI	AATT	8 cut(s)	263, 328, 470, 637, 736, 873, 989, 1134
MmeI	TCCRAC	1 cut(s)	276
MseI	TTAA	2 cut(s)	306, 326
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	3 cut(s)	629, 746, 980
MspR9I	CCNGG	4 cut(s)	528, 629, 746, 959
Mva1269I	GAATGC	2 cut(s)	127, 415
MvaI	CCWGG	2 cut(s)	528, 959
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	2 cut(s)	629, 746
NdeII	GATC	6 cut(s)	104, 139, 160, 466, 691, 946
NlaIII	CATG	5 cut(s)	138, 176, 235, 451, 953
NlaIV	GGNNCC	3 cut(s)	519, 574, 591
NspI	RCATGY	3 cut(s)	138, 235, 451
PaeI	GCATGC	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	553
PciI	ACATGT	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	2 cut(s)	675, 700
PctI	GAATGC	2 cut(s)	127, 415
PfeI	GAWTC	3 cut(s)	4, 79, 806
PflMI	CCANNNNNTGG	1 cut(s)	1075
PkrI	GCNGC	3 cut(s)	316, 319, 1052
PscI	ACATGT	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	526, 957
PspEI	GGTNACC	1 cut(s)	953
PspGI	CCWGG	2 cut(s)	526, 957
PspN4I	GGNNCC	3 cut(s)	519, 574, 591
PspPI	GGNCC	1 cut(s)	572
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	5 cut(s)	236, 605, 733, 813, 1082
RsaNI	GTAC	5 cut(s)	235, 604, 732, 812, 1081
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	306, 326
SatI	GCNGC	3 cut(s)	315, 318, 1051
Sau3AI	GATC	6 cut(s)	104, 139, 160, 466, 691, 946
Sau96I	GGNCC	1 cut(s)	572
ScrFI	CCNGG	4 cut(s)	528, 629, 746, 959
SduI	GDGCHC	1 cut(s)	656
SexAI	ACCWGGT	1 cut(s)	957
SfaNI	GCATC	2 cut(s)	405, 469
SfcI	CTRYAG	2 cut(s)	108, 315
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	8 cut(s)	263, 328, 470, 637, 736, 873, 989, 1134
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	3 cut(s)	418, 434, 708
SspMI	CTAG	2 cut(s)	401, 1127
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	4 cut(s)	526, 627, 744, 957
TaaI	ACNGT	3 cut(s)	95, 459, 1102
TaiI	ACGT	3 cut(s)	672, 893, 973
TaqI	TCGA	7 cut(s)	119, 300, 678, 804, 919, 963, 1182
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	8 cut(s)	263, 328, 470, 637, 736, 873, 989, 1134
TatI	WGTACW	3 cut(s)	234, 603, 1080
TfiI	GAWTC	3 cut(s)	4, 79, 806
Tru1I	TTAA	2 cut(s)	306, 326
Tru9I	TTAA	2 cut(s)	306, 326
TscAI	CASTG	3 cut(s)	462, 1024, 1050
TseI	GCWGC	3 cut(s)	314, 317, 1050
TspDTI	ATGAA	5 cut(s)	14, 363, 437, 463, 1020
TspRI	CASTG	3 cut(s)	462, 1024, 1050
Van91I	CCANNNNNTGG	1 cut(s)	1075
XagI	CCTNNNNNAGG	1 cut(s)	525
XapI	RAATTY	2 cut(s)	263, 1134
XbaI	TCTAGA	1 cut(s)	400
XceI	RCATGY	3 cut(s)	138, 235, 451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XspI	CTAG	2 cut(s)	401, 1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.