Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002348.1

Orthogroup ID

OG0008582

Physical Location & Seq

Genomic Coordinates Forward (+)

125165 .. 127836

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002348.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgattcgaaggactgcatgcttgagtaagctggttcaatctgttggagttggctcttcgtcatctttggcaaccaagcttagagatcaccgctgctttggatcaggggatgcttctaacgcagaacaagcgtgtgaagcatctgtgtgcagtaaatttggtaagaatgagtatgctgatgtggattgggataatcttggatttggtctagtgccaactgattacatgtacatgatgaaatgttccaacaacgggatattcgaacaaggccaacttaatcgttatggaaatattgaactaagccctgctgctggagttttgaattatggccagggtatatatgaagggatgaaagcattcaggaatgaagatggcaatctccttatctttcgtccagaccagaatgcaatgcgaatgaagattggttcagaaagaatgtgcatgccctcgccatcccttgatcaatttatcgatgctgtgaagcaaactgctcaagctaacaagtgttgggttccccctccaggaaaagggtctttatatattaggcctctacttataggaagtggtcctatattaggtttaggcacatcgcctgaatacacattccttgtatacgcttcaccagtccgcaactatttcaaggagggttctgcacctttgagcatatacgtcgaggaggaatatcatcgttcctctcgtggtggggctggaggtgtcaaaagcatcaccaattatgctccagttttgaaggcactactcagagcaaagagccgaggattttctgatgtgttatatctagactcggtaaataaaaagaatctggaggaggtgtcttcttgtaacattttcattgtgaagggcaatgttatttcaactcctacaacggctgggactatactatcaggggtaactcgaaaaagcatcattgaaatcgctcgcgatcatggttatcaggttgaggagcgtgcaattccggtagatgaactgagtgaagctgatgaagtattctgtacaggaactgcagtcggtgttgctcctgtgggaaacattacatataaagataaaaggatggaatacaaaacaggtgttcaaactgtttgtccacagctctactcaactctcataggaattcaaacgggtcgtattgaggataagaaaggctggattcttgaaattgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071669

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

393

Amino Acids

42.93

Weight (kDa)

7.45

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10070 AT1G10070 AT1G10070
fragaria_vesca	FvH4_2g32430
malus_domestica	MD08G1075600.v1.1 MD15G1063100.v1.1
prunus_persica	Prupe.1G417100_v2.0.a1
pyrus_communis	pycom08g06240 pycom15g05970
rosa_chinensis	RchiOBHm_Chr3g0458081 RchiOBHm_Chr6g0310241
rosa_laevigata	RLG00000010496
rosa_multiflora	Rmu_sc0002348.1_g000024 Rmu_sc0008163.1_g000019
rosa_roxburghii	Rroxscaffold_7G00158710
rosa_rugosa	Rorug06G0378400
rosa_samantha	Rh3BG088200 Rh3CG088800 Rh3DG089100 Rh6AG492600 Rh6DG493400
rosa_wichuraiana	Rw3G007260 Rw6G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	612
AccII	CGCG	1 cut(s)	939
AciI	CCGC	2 cut(s)	91, 628
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	2 cut(s)	155, 1128
AfaI	GTAC	2 cut(s)	230, 1012
AfiI	CCNNNNNNNGG	5 cut(s)	252, 311, 521, 527, 575
AflIII	ACRYGT	1 cut(s)	225
AjnI	CCWGG	2 cut(s)	330, 520
AluBI	AGCT	5 cut(s)	31, 79, 497, 995, 1108
AluI	AGCT	5 cut(s)	31, 79, 497, 995, 1108
AlwI	GGATC	1 cut(s)	109
AlwNI	CAGNNNCTG	1 cut(s)	1019
AoxI	GGCC	3 cut(s)	268, 328, 545
ApeKI	GCWGC	2 cut(s)	93, 308
ApoI	RAATTY	2 cut(s)	155, 1128
ArsI	GACNNNNNNTTYG	2 cut(s)	1084, 1116
Asp700I	GAANNNNTTC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	566
AsuHPI	GGTGA	3 cut(s)	80, 612, 718
AsuII	TTCGAA	2 cut(s)	7, 261
AvaII	GGWCC	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	330
BauI	CACGAG	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	825
BbvI	GCAGC	2 cut(s)	80, 295
BccI	CCATC	3 cut(s)	365, 460, 1063
BceAI	ACGGC	1 cut(s)	900
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BciT130I	CCWGG	2 cut(s)	332, 522
BclI	TGATCA	1 cut(s)	460
BfaI	CTAG	2 cut(s)	209, 797
BfmI	CTRYAG	1 cut(s)	1020
BisI	GCNGC	2 cut(s)	94, 309
BlsI	GCNGC	2 cut(s)	95, 310
Bme1390I	CCNGG	2 cut(s)	332, 522
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	2 cut(s)	332, 522
BmsI	GCATC	5 cut(s)	100, 149, 463, 732, 930
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	5 cut(s)	333, 504, 723, 729, 842
Bpu14I	TTCGAA	2 cut(s)	7, 261
BpuEI	CTTGAG	2 cut(s)	43, 477
Bsa29I	ATCGAT	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	331, 772
BsaWI	WCCGGW	1 cut(s)	973
BsaXI	ACNNNNNCTCC	2 cut(s)	815, 845
Bsc4I	CCNNNNNNNGG	5 cut(s)	252, 311, 521, 527, 575
Bse1I	ACTGG	2 cut(s)	623, 740
Bse3DI	GCAATG	2 cut(s)	414, 868
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	332, 522
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	331, 772
BseGI	GGATG	4 cut(s)	115, 354, 452, 1074
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	5 cut(s)	252, 311, 521, 527, 575
BseMI	GCAATG	2 cut(s)	414, 868
BseMII	CTCAG	2 cut(s)	772, 977
BseNI	ACTGG	2 cut(s)	623, 740
BseRI	GAGGAG	3 cut(s)	689, 839, 974
BseXI	GCAGC	2 cut(s)	80, 295
BseYI	CCCAGC	1 cut(s)	887
BsgI	GTGCAG	2 cut(s)	169, 636
Bsh1236I	CGCG	1 cut(s)	939
BshFI	GGCC	3 cut(s)	270, 330, 547
BshVI	ATCGAT	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	974
BslFI	GGGAC	1 cut(s)	904
BslI	CCNNNNNNNGG	5 cut(s)	252, 311, 521, 527, 575
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	2 cut(s)	356, 409
BsnI	GGCC	3 cut(s)	270, 330, 547
Bsp119I	TTCGAA	2 cut(s)	7, 261
Bsp1407I	TGTACA	2 cut(s)	228, 1010
Bsp143I	GATC	4 cut(s)	85, 101, 460, 940
Bsp68I	TCGCGA	1 cut(s)	939
BspACI	CCGC	2 cut(s)	91, 628
BspANI	GGCC	3 cut(s)	270, 330, 547
BspCNI	CTCAG	2 cut(s)	771, 978
BspDI	ATCGAT	1 cut(s)	471
BspFNI	CGCG	1 cut(s)	939
BspLI	GGNNCC	1 cut(s)	513
BspMAI	CTGCAG	1 cut(s)	1024
BspPI	GGATC	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	61
BspT104I	TTCGAA	2 cut(s)	7, 261
BsrDI	GCAATG	2 cut(s)	414, 868
BsrGI	TGTACA	2 cut(s)	228, 1010
BsrI	ACTGG	2 cut(s)	623, 740
BssECI	CCNNGG	2 cut(s)	331, 772
BssMI	GATC	4 cut(s)	85, 101, 460, 940
BssNAI	GTATAC	1 cut(s)	613
BssSI	CACGAG	1 cut(s)	696
Bst1107I	GTATAC	1 cut(s)	613
Bst2BI	CACGAG	1 cut(s)	696
Bst2UI	CCWGG	2 cut(s)	332, 522
Bst4CI	ACNGT	1 cut(s)	1096
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	2 cut(s)	228, 1010
BstBI	TTCGAA	2 cut(s)	7, 261
BstC8I	GCNNGC	4 cut(s)	19, 443, 937, 966
BstDEI	CTNAG	4 cut(s)	80, 299, 758, 986
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	4 cut(s)	115, 354, 452, 1074
BstFNI	CGCG	1 cut(s)	939
BstKTI	GATC	4 cut(s)	88, 104, 463, 943
BstMBI	GATC	4 cut(s)	85, 101, 460, 940
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 128, 137
BstNI	CCWGG	2 cut(s)	332, 522
BstNSI	RCATGY	3 cut(s)	21, 229, 445
BstSCI	CCNGG	2 cut(s)	330, 520
BstSFI	CTRYAG	1 cut(s)	1020
BstUI	CGCG	1 cut(s)	939
BstV1I	GCAGC	2 cut(s)	80, 295
BstV2I	GAAGAC	1 cut(s)	825
BstZ17I	GTATAC	1 cut(s)	613
Bsu15I	ATCGAT	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	270, 330, 547
BsuTUI	ATCGAT	1 cut(s)	471
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	4 cut(s)	115, 354, 452, 1074
BtuMI	TCGCGA	1 cut(s)	939
Cac8I	GCNNGC	4 cut(s)	19, 443, 937, 966
CaiI	CAGNNNCTG	1 cut(s)	1019
Cfr13I	GGNCC	1 cut(s)	566
ClaI	ATCGAT	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	229, 1011
CviAII	CATG	5 cut(s)	18, 226, 232, 442, 944
CviQI	GTAC	2 cut(s)	229, 1011
DdeI	CTNAG	4 cut(s)	80, 299, 758, 986
DpnI	GATC	4 cut(s)	87, 103, 462, 942
DpnII	GATC	4 cut(s)	85, 101, 460, 940
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	566
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	1128
EcoRII	CCWGG	2 cut(s)	330, 520
FaeI	CATG	5 cut(s)	21, 229, 235, 445, 947
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	5 cut(s)	17, 225, 231, 441, 943
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	2 cut(s)	94, 309
FokI	GGATG	4 cut(s)	122, 361, 439, 1081
Fsp4HI	GCNGC	2 cut(s)	94, 309
FspBI	CTAG	2 cut(s)	209, 797
GluI	GCNGC	2 cut(s)	94, 309
GsaI	CCCAGC	1 cut(s)	891
GsuI	CTGGAG	5 cut(s)	333, 504, 723, 729, 842
HaeIII	GGCC	3 cut(s)	270, 330, 547
HapII	CCGG	1 cut(s)	974
Hin1II	CATG	5 cut(s)	21, 229, 235, 445, 947
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	4 cut(s)	4, 800, 817, 1165
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	3 cut(s)	80, 612, 718
Hpy166II	GTNNAC	2 cut(s)	613, 1103
Hpy188I	TCNGA	3 cut(s)	430, 761, 784
Hpy188III	TCNNGA	6 cut(s)	361, 395, 797, 821, 938, 1169
Hpy8I	GTNNAC	2 cut(s)	613, 1103
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	4 cut(s)	3, 338, 742, 850
HpyCH4III	ACNGT	1 cut(s)	1096
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	7 cut(s)	17, 150, 407, 441, 653, 968, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 128, 137
HpyF3I	CTNAG	4 cut(s)	80, 299, 758, 986
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	5 cut(s)	21, 229, 235, 445, 947
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	4 cut(s)	85, 101, 460, 940
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	3 cut(s)	742, 961, 1039
Lsp1109I	GCAGC	2 cut(s)	80, 295
LweI	GCATC	5 cut(s)	100, 149, 463, 732, 930
MaeI	CTAG	2 cut(s)	209, 797
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	2 cut(s)	839, 907
MalI	GATC	4 cut(s)	87, 103, 462, 942
MboI	GATC	4 cut(s)	85, 101, 460, 940
MboII	GAAGA	4 cut(s)	48, 380, 430, 825
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	7 cut(s)	155, 322, 464, 730, 969, 1128, 1173
MluNI	TGGCCA	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	2 cut(s)	25, 270
Mox20I	TGGCCA	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	2 cut(s)	276, 1180
MslI	CAYNNNNRTG	2 cut(s)	145, 230
Msp20I	TGGCCA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	2 cut(s)	332, 522
Mva1269I	GAATGC	2 cut(s)	356, 409
MvaI	CCWGG	2 cut(s)	332, 522
MvnI	CGCG	1 cut(s)	939
MwoI	GCNNNNNNNGC	3 cut(s)	119, 128, 137
NdeII	GATC	4 cut(s)	85, 101, 460, 940
NlaIII	CATG	5 cut(s)	21, 229, 235, 445, 947
NlaIV	GGNNCC	1 cut(s)	513
NmeAIII	GCCGAG	1 cut(s)	797
NruI	TCGCGA	1 cut(s)	939
NspI	RCATGY	3 cut(s)	21, 229, 445
NspV	TTCGAA	2 cut(s)	7, 261
PaeI	GCATGC	2 cut(s)	21, 445
PceI	AGGCCT	1 cut(s)	547
PciI	ACATGT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 694
PctI	GAATGC	2 cut(s)	356, 409
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	3 cut(s)	4, 817, 1165
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	2 cut(s)	95, 310
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
PscI	ACATGT	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	330, 520
PspFI	CCCAGC	1 cut(s)	887
PspGI	CCWGG	2 cut(s)	330, 520
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	566
PstI	CTGCAG	1 cut(s)	1024
PstNI	CAGNNNCTG	1 cut(s)	1019
RruI	TCGCGA	1 cut(s)	939
RsaI	GTAC	2 cut(s)	230, 1012
RsaNI	GTAC	2 cut(s)	229, 1011
RseI	CAYNNNNRTG	2 cut(s)	145, 230
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	276, 1180
SatI	GCNGC	2 cut(s)	94, 309
Sau3AI	GATC	4 cut(s)	85, 101, 460, 940
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	2 cut(s)	332, 522
SfaNI	GCATC	5 cut(s)	100, 149, 463, 732, 930
SfcI	CTRYAG	1 cut(s)	1020
SfuI	TTCGAA	2 cut(s)	7, 261
SinI	GGWCC	1 cut(s)	566
SmiMI	CAYNNNNRTG	2 cut(s)	145, 230
SmlI	CTYRAG	2 cut(s)	22, 492
SmoI	CTYRAG	2 cut(s)	22, 492
SphI	GCATGC	2 cut(s)	21, 445
Sse9I	AATT	7 cut(s)	155, 322, 464, 730, 969, 1128, 1173
SseBI	AGGCCT	1 cut(s)	547
SsiI	CCGC	2 cut(s)	91, 628
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	2 cut(s)	209, 797
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	2 cut(s)	330, 520
TaaI	ACNGT	1 cut(s)	1096
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	5 cut(s)	7, 261, 471, 672, 913
TasI	AATT	7 cut(s)	155, 322, 464, 730, 969, 1128, 1173
TatI	WGTACW	2 cut(s)	228, 1010
TfiI	GAWTC	3 cut(s)	4, 817, 1165
Tru1I	TTAA	2 cut(s)	276, 1180
Tru9I	TTAA	2 cut(s)	276, 1180
TseI	GCWGC	2 cut(s)	93, 308
TspDTI	ATGAA	8 cut(s)	251, 357, 365, 381, 431, 838, 996, 1014
VpaK11BI	GGWCC	1 cut(s)	566
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	2 cut(s)	155, 1128
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	3 cut(s)	21, 229, 445
XmiI	GTMKAC	1 cut(s)	612
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	2 cut(s)	209, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.