Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008163.1

Orthogroup ID

OG0008582

Physical Location & Seq

Genomic Coordinates Reverse (-)

88263 .. 90946

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008163.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgattcgaaggactgcatgcttgagtaagctggttcaatctgttggagttggctcttcgtcatctttgccaaccaagcagcttagagatcaccgctgctttggatcaggggctgcttctaacgcagaacaagcgtgtgaagcatctgtgtgcagtaaattaggtaagaatgagtatgctgatgtggattgggataatcttggatttggtctagtgccaactgattacatgtacatgatgaaatgttccaacaacgggatattcgaacaaggccaacttaatcgttatggaaatattgaactaagccctgctgctggagttttgaattatggccagggtatctatgaagggatgaaagcattcaggaaagaagatggcaatctccttatctttcgtccagaccagaatgcaatgcgaatgaagattggttcagaaagaatgtgcatgccctcgccatcccttgatcaatttatcgatgctgtgaagcaaactgctcaagctaacaagtgttgggagggttctgcacctttgagcatatacgttgaggaggaatatgatcgttcctctcgtggtggggctggaggtgtcaaaagcatcaccaattatgctccagttttgaaggcactgcttagagcaaagagccgaggattttctgatgtgttatatctagactcggtaaataaaaagaatctggaggaggtgtcttcttgtaacattttcattgtgaagggcaatgttatttcaactcctacaacggctgggactatactatcaggggtaactcgaaaaagcatcattgaaatcgctcgcgatcatggttatcaggttgaggagcgtgcaattccggtagatgaactgagtgaagctgatgaagtattctgtacaggaactgcagtcggtgttgctcctgtgggaaacattacatataaagataaaaggatggaatacaaaacaggtgttcaaactgtttgtccacagctctactcaactctcataggaattcaaacgggtcgtattgaggataagaaaggctggattcttgaaattgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071669

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

350

Amino Acids

38.28

Weight (kDa)

6.26

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10070 AT1G10070 AT1G10070
fragaria_vesca	FvH4_2g32430
malus_domestica	MD08G1075600.v1.1 MD15G1063100.v1.1
prunus_persica	Prupe.1G417100_v2.0.a1
pyrus_communis	pycom08g06240 pycom15g05970
rosa_chinensis	RchiOBHm_Chr3g0458081 RchiOBHm_Chr6g0310241
rosa_laevigata	RLG00000010496
rosa_multiflora	Rmu_sc0002348.1_g000024 Rmu_sc0008163.1_g000019
rosa_roxburghii	Rroxscaffold_7G00158710
rosa_rugosa	Rorug06G0378400
rosa_samantha	Rh3BG088200 Rh3CG088800 Rh3DG089100 Rh6AG492600 Rh6DG493400
rosa_wichuraiana	Rw3G007260 Rw6G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	810
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	999
AfaI	GTAC	2 cut(s)	233, 883
AfiI	CCNNNNNNNGG	2 cut(s)	255, 314
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	9 cut(s)	38, 299, 325, 619, 744, 800, 962, 1004, 1043
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	5 cut(s)	31, 82, 500, 866, 979
AluI	AGCT	5 cut(s)	31, 82, 500, 866, 979
AlwI	GGATC	1 cut(s)	112
AlwNI	CAGNNNCTG	2 cut(s)	113, 890
AoxI	GGCC	2 cut(s)	271, 331
ApeKI	GCWGC	4 cut(s)	79, 96, 113, 311
ApoI	RAATTY	1 cut(s)	999
ArsI	GACNNNNNNTTYG	2 cut(s)	955, 987
Asp700I	GAANNNNTTC	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	83, 589
AsuII	TTCGAA	2 cut(s)	7, 264
BalI	TGGCCA	1 cut(s)	333
BauI	CACGAG	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	696
BbvI	GCAGC	4 cut(s)	83, 91, 100, 298
BccI	CCATC	3 cut(s)	368, 463, 934
BceAI	ACGGC	1 cut(s)	771
BciT130I	CCWGG	1 cut(s)	335
BclI	TGATCA	1 cut(s)	463
BfaI	CTAG	2 cut(s)	212, 668
BfmI	CTRYAG	1 cut(s)	891
BisI	GCNGC	4 cut(s)	80, 97, 114, 312
BlsI	GCNGC	4 cut(s)	81, 98, 115, 313
Bme1390I	CCNGG	1 cut(s)	335
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	4 cut(s)	152, 466, 603, 801
BpiI	GAAGAC	1 cut(s)	696
BpmI	CTGGAG	4 cut(s)	336, 594, 600, 713
Bpu14I	TTCGAA	2 cut(s)	7, 264
BpuEI	CTTGAG	2 cut(s)	43, 480
Bsa29I	ATCGAT	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	334, 643
BsaWI	WCCGGW	1 cut(s)	844
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 314
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	2 cut(s)	417, 739
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	335
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	334, 643
BseGI	GGATG	3 cut(s)	357, 455, 945
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	255, 314
BseMI	GCAATG	2 cut(s)	417, 739
BseMII	CTCAG	1 cut(s)	848
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	3 cut(s)	560, 710, 845
BseXI	GCAGC	4 cut(s)	83, 91, 100, 298
BseYI	CCCAGC	1 cut(s)	758
BsgI	GTGCAG	2 cut(s)	172, 507
Bsh1236I	CGCG	1 cut(s)	810
BshFI	GGCC	2 cut(s)	273, 333
BshVI	ATCGAT	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	845
BslFI	GGGAC	1 cut(s)	775
BslI	CCNNNNNNNGG	2 cut(s)	255, 314
BsmFI	GGGAC	1 cut(s)	775
BsmI	GAATGC	2 cut(s)	359, 412
BsnI	GGCC	2 cut(s)	273, 333
Bsp119I	TTCGAA	2 cut(s)	7, 264
Bsp1407I	TGTACA	2 cut(s)	231, 881
Bsp143I	GATC	5 cut(s)	88, 104, 463, 556, 811
Bsp68I	TCGCGA	1 cut(s)	810
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	2 cut(s)	273, 333
BspCNI	CTCAG	1 cut(s)	849
BspDI	ATCGAT	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	810
BspMAI	CTGCAG	1 cut(s)	895
BspPI	GGATC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	61
BspT104I	TTCGAA	2 cut(s)	7, 264
BsrDI	GCAATG	2 cut(s)	417, 739
BsrGI	TGTACA	2 cut(s)	231, 881
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	2 cut(s)	334, 643
BssMI	GATC	5 cut(s)	88, 104, 463, 556, 811
BssSI	CACGAG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	967
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	2 cut(s)	231, 881
BstBI	TTCGAA	2 cut(s)	7, 264
BstC8I	GCNNGC	4 cut(s)	19, 446, 808, 837
BstDEI	CTNAG	4 cut(s)	83, 302, 629, 857
BstF5I	GGATG	3 cut(s)	357, 455, 945
BstFNI	CGCG	1 cut(s)	810
BstKTI	GATC	5 cut(s)	91, 107, 466, 559, 814
BstMBI	GATC	5 cut(s)	88, 104, 463, 556, 811
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 122, 131, 140
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	3 cut(s)	21, 232, 448
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	1 cut(s)	891
BstUI	CGCG	1 cut(s)	810
BstV1I	GCAGC	4 cut(s)	83, 91, 100, 298
BstV2I	GAAGAC	1 cut(s)	696
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	273, 333
BsuTUI	ATCGAT	1 cut(s)	474
BtsCI	GGATG	3 cut(s)	357, 455, 945
BtsI	GCAGTG	1 cut(s)	623
BtsIMutI	CAGTG	1 cut(s)	623
BtuMI	TCGCGA	1 cut(s)	810
Cac8I	GCNNGC	4 cut(s)	19, 446, 808, 837
CaiI	CAGNNNCTG	2 cut(s)	113, 890
ClaI	ATCGAT	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	232, 882
CviAII	CATG	5 cut(s)	18, 229, 235, 445, 815
CviQI	GTAC	2 cut(s)	232, 882
DdeI	CTNAG	4 cut(s)	83, 302, 629, 857
DpnI	GATC	5 cut(s)	90, 106, 465, 558, 813
DpnII	GATC	5 cut(s)	88, 104, 463, 556, 811
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	999
EcoRII	CCWGG	1 cut(s)	333
FaeI	CATG	5 cut(s)	21, 232, 238, 448, 818
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	5 cut(s)	17, 228, 234, 444, 814
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	4 cut(s)	80, 97, 114, 312
FokI	GGATG	3 cut(s)	364, 442, 952
Fsp4HI	GCNGC	4 cut(s)	80, 97, 114, 312
FspBI	CTAG	2 cut(s)	212, 668
GluI	GCNGC	4 cut(s)	80, 97, 114, 312
GsaI	CCCAGC	1 cut(s)	762
GsuI	CTGGAG	4 cut(s)	336, 594, 600, 713
HaeIII	GGCC	2 cut(s)	273, 333
HapII	CCGG	1 cut(s)	845
Hin1II	CATG	5 cut(s)	21, 232, 238, 448, 818
HinfI	GANTC	4 cut(s)	4, 671, 688, 1036
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	2 cut(s)	83, 589
Hpy166II	GTNNAC	1 cut(s)	974
Hpy188I	TCNGA	2 cut(s)	433, 655
Hpy188III	TCNNGA	6 cut(s)	364, 398, 668, 692, 809, 1040
Hpy8I	GTNNAC	1 cut(s)	974
HpyAV	CCTTC	4 cut(s)	3, 341, 613, 721
HpyCH4III	ACNGT	1 cut(s)	967
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	7 cut(s)	17, 153, 410, 444, 524, 839, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 122, 131, 140
HpyF3I	CTNAG	4 cut(s)	83, 302, 629, 857
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	5 cut(s)	21, 232, 238, 448, 818
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	5 cut(s)	88, 104, 463, 556, 811
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	3 cut(s)	613, 832, 910
Lsp1109I	GCAGC	4 cut(s)	83, 91, 100, 298
LweI	GCATC	4 cut(s)	152, 466, 603, 801
MaeI	CTAG	2 cut(s)	212, 668
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	2 cut(s)	710, 778
MalI	GATC	5 cut(s)	90, 106, 465, 558, 813
MboI	GATC	5 cut(s)	88, 104, 463, 556, 811
MboII	GAAGA	4 cut(s)	48, 383, 433, 696
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	7 cut(s)	158, 325, 467, 601, 840, 999, 1044
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	2 cut(s)	25, 273
Mox20I	TGGCCA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	2 cut(s)	279, 1051
MslI	CAYNNNNRTG	2 cut(s)	148, 233
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	845
MspR9I	CCNGG	1 cut(s)	335
Mva1269I	GAATGC	2 cut(s)	359, 412
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	1 cut(s)	810
MwoI	GCNNNNNNNGC	4 cut(s)	76, 122, 131, 140
NdeII	GATC	5 cut(s)	88, 104, 463, 556, 811
NlaIII	CATG	5 cut(s)	21, 232, 238, 448, 818
NmeAIII	GCCGAG	1 cut(s)	668
NruI	TCGCGA	1 cut(s)	810
NspI	RCATGY	3 cut(s)	21, 232, 448
NspV	TTCGAA	2 cut(s)	7, 264
PaeI	GCATGC	2 cut(s)	21, 448
PciI	ACATGT	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 565
PctI	GAATGC	2 cut(s)	359, 412
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	4, 688, 1036
PkrI	GCNGC	4 cut(s)	81, 98, 115, 313
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	895
PstNI	CAGNNNCTG	2 cut(s)	113, 890
RruI	TCGCGA	1 cut(s)	810
RsaI	GTAC	2 cut(s)	233, 883
RsaNI	GTAC	2 cut(s)	232, 882
RseI	CAYNNNNRTG	2 cut(s)	148, 233
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	279, 1051
SatI	GCNGC	4 cut(s)	80, 97, 114, 312
Sau3AI	GATC	5 cut(s)	88, 104, 463, 556, 811
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	335
SfaNI	GCATC	4 cut(s)	152, 466, 603, 801
SfcI	CTRYAG	1 cut(s)	891
SfuI	TTCGAA	2 cut(s)	7, 264
SmiMI	CAYNNNNRTG	2 cut(s)	148, 233
SmlI	CTYRAG	2 cut(s)	22, 495
SmoI	CTYRAG	2 cut(s)	22, 495
SphI	GCATGC	2 cut(s)	21, 448
Sse9I	AATT	7 cut(s)	158, 325, 467, 601, 840, 999, 1044
SsiI	CCGC	1 cut(s)	94
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	2 cut(s)	212, 668
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	967
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	4 cut(s)	7, 264, 474, 784
TasI	AATT	7 cut(s)	158, 325, 467, 601, 840, 999, 1044
TatI	WGTACW	2 cut(s)	231, 881
TfiI	GAWTC	3 cut(s)	4, 688, 1036
Tru1I	TTAA	2 cut(s)	279, 1051
Tru9I	TTAA	2 cut(s)	279, 1051
TscAI	CASTG	1 cut(s)	630
TseI	GCWGC	4 cut(s)	79, 96, 113, 311
TspDTI	ATGAA	7 cut(s)	254, 360, 368, 434, 709, 867, 885
TspRI	CASTG	1 cut(s)	630
XapI	RAATTY	1 cut(s)	999
XbaI	TCTAGA	1 cut(s)	667
XceI	RCATGY	3 cut(s)	21, 232, 448
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	212, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.