Rw6G042870

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008582
Physical Location & Seq
Reverse (-)
66267776 .. 66270439
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042870.1

Sequence Viewer

Length: 1185 bp
ATGATTCGAAGGACTGCATGCTTGAGTAAGCTGGTTCAATCTGTTGGAGTTGGCTCTTCGTCATCTTTGGCAACCAAGCAGCTTAGAGATCACCGCTGCTTTGGATCAGGGGATGCTTCTAACGCAGAACAAGCGTGTGAAGCTTCTGTGTGCAGTAAATTTGGTAAGAATGAGTATGCTGATGTGGATTGGGATAATCTTGGATTTGGTCTAGTGCCAACTGATTACATGTACATGATGAAATGTTCCAACAACGGGATATTCGAACAAGGCCAACTTAATCGTTATGGAAATATTGAACTAAGCCCTGCTGCTGGAGTTTTGAATTATGGCCAGGGTATCTATGAAGGGATGAAAGCATTCAGGAAAGAAGATGGCAATCTCCTTATCTTTCGTCCAGACCAGAATGCAATGCGAATGAAGATTGGTTCAGAAAGAATGTGCATGCCCTCGCCATCCCTTGATCAATTTATCGATGCTGTGAAGCAAACCGCTCAAGCTAACAAGTGTTGGGTTCCCCCTCCAGGAAAAGGGTCTTTATATATTAGGCCTCTACTTATAGGAAGTGGTCCTATATTAGGTTTAGGCACATCGCCTGAATACACATTCCTTGTATACGCTTCACCAGTCCGCAACTATTTCAAGGAGGGTTCTGCACCTTTGAGCATATACGTCGAGGAGGAATATGATCGTTCCTCTCGTGGTGGGGCTGGAGGTGTCAAAAGCATCACCAATTATGCTCCAGTTTTGAAGGCACTGCTTAGAGCAAAGAGCCGAGGATTTTCTGATGTGTTATATCTAGACTCGGTAAATAAAAAGAATCTGGAGGAGGTGTCTTCTTGTAACATTTTCATTGTGAAGGGCAATGTTATTTCAACTCCTACAACGGCTGGGACTATACTATCAGGGGTAACTCGAAAAAGCATCATTGAAATCGCTCGCGATCATGGTTATCAGGTTGAGGAGCGTGCAATTCCGGTAGATGAACTGAGTGAAGCTGATGAAGTATTCTGTACAGGAACTGCAGTCGGAGTTGCTCCGGTGGGAAACATTACATATAAAGATAAAAGGATGGAATACAAAACAGGTGTTCAAACTGTTTGTCCACAGCTCTACTCAACTCTCATAGGAATTCAAACGGGTCGTATTGAGGATAAGAAAGGCTGGATTCTTGAAATTGATTAA

Protein Analysis

394

Amino Acids

43.05

Weight (kDa)

7.43

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 113 - 351 1.6e-35 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 494
AccI GTMKAC 1 cut(s) 615
AccII CGCG 1 cut(s) 942
AciI CCGC 3 cut(s) 94, 492, 631
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 2 cut(s) 158, 1131
AfaI GTAC 2 cut(s) 233, 1015
AfiI CCNNNNNNNGG 5 cut(s) 255, 314, 524, 530, 578
AflIII ACRYGT 1 cut(s) 228
AjnI CCWGG 2 cut(s) 333, 523
AluBI AGCT 6 cut(s) 31, 82, 143, 500, 998, 1111
AluI AGCT 6 cut(s) 31, 82, 143, 500, 998, 1111
AlwI GGATC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 1022
AoxI GGCC 3 cut(s) 271, 331, 548
ApeKI GCWGC 3 cut(s) 79, 96, 311
ApoI RAATTY 2 cut(s) 158, 1131
ArsI GACNNNNNNTTYG 2 cut(s) 1087, 1119
Asp700I GAANNNNTTC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 3 cut(s) 83, 615, 721
AsuII TTCGAA 2 cut(s) 7, 264
AvaII GGWCC 1 cut(s) 569
BalI TGGCCA 1 cut(s) 333
BauI CACGAG 1 cut(s) 699
BbsI GAAGAC 1 cut(s) 828
BbvI GCAGC 3 cut(s) 83, 91, 298
BccI CCATC 3 cut(s) 368, 463, 1066
BceAI ACGGC 1 cut(s) 903
BcgI CGANNNNNNTGC 2 cut(s) 655, 689
BciT130I CCWGG 2 cut(s) 335, 525
BclI TGATCA 1 cut(s) 463
BfaI CTAG 2 cut(s) 212, 800
BfmI CTRYAG 1 cut(s) 1023
BisI GCNGC 3 cut(s) 80, 97, 312
BlsI GCNGC 3 cut(s) 81, 98, 313
Bme1390I CCNGG 2 cut(s) 335, 525
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 2 cut(s) 335, 525
BmsI GCATC 4 cut(s) 103, 466, 735, 933
BpiI GAAGAC 1 cut(s) 828
BpmI CTGGAG 5 cut(s) 336, 507, 726, 732, 845
Bpu14I TTCGAA 2 cut(s) 7, 264
BpuEI CTTGAG 2 cut(s) 43, 480
Bsa29I ATCGAT 1 cut(s) 474
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 334, 775
BsaWI WCCGGW 2 cut(s) 976, 1039
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 5 cut(s) 255, 314, 524, 530, 578
Bse1I ACTGG 2 cut(s) 626, 743
Bse3DI GCAATG 2 cut(s) 417, 871
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 2 cut(s) 335, 525
BseCI ATCGAT 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 334, 775
BseGI GGATG 4 cut(s) 118, 357, 455, 1077
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 5 cut(s) 255, 314, 524, 530, 578
BseMI GCAATG 2 cut(s) 417, 871
BseMII CTCAG 1 cut(s) 980
BseNI ACTGG 2 cut(s) 626, 743
BseRI GAGGAG 3 cut(s) 692, 842, 977
BseXI GCAGC 3 cut(s) 83, 91, 298
BseYI CCCAGC 1 cut(s) 890
BsgI GTGCAG 2 cut(s) 172, 639
Bsh1236I CGCG 1 cut(s) 942
BshFI GGCC 3 cut(s) 273, 333, 550
BshVI ATCGAT 1 cut(s) 474
BsiSI CCGG 2 cut(s) 977, 1040
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 5 cut(s) 255, 314, 524, 530, 578
BsmFI GGGAC 1 cut(s) 907
BsmI GAATGC 2 cut(s) 359, 412
BsnI GGCC 3 cut(s) 273, 333, 550
Bsp119I TTCGAA 2 cut(s) 7, 264
Bsp1407I TGTACA 2 cut(s) 231, 1013
Bsp143I GATC 5 cut(s) 88, 104, 463, 688, 943
Bsp68I TCGCGA 1 cut(s) 942
BspACI CCGC 3 cut(s) 94, 492, 631
BspANI GGCC 3 cut(s) 273, 333, 550
BspCNI CTCAG 1 cut(s) 981
BspDI ATCGAT 1 cut(s) 474
BspFNI CGCG 1 cut(s) 942
BspLI GGNNCC 1 cut(s) 516
BspMAI CTGCAG 1 cut(s) 1027
BspPI GGATC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 61
BspT104I TTCGAA 2 cut(s) 7, 264
BsrBI CCGCTC 1 cut(s) 494
BsrDI GCAATG 2 cut(s) 417, 871
BsrGI TGTACA 2 cut(s) 231, 1013
BsrI ACTGG 2 cut(s) 626, 743
BssECI CCNNGG 2 cut(s) 334, 775
BssMI GATC 5 cut(s) 88, 104, 463, 688, 943
BssNAI GTATAC 1 cut(s) 616
BssSI CACGAG 1 cut(s) 699
Bst1107I GTATAC 1 cut(s) 616
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 2 cut(s) 335, 525
Bst4CI ACNGT 1 cut(s) 1099
Bst6I CTCTTC 1 cut(s) 61
BstAUI TGTACA 2 cut(s) 231, 1013
BstBI TTCGAA 2 cut(s) 7, 264
BstC8I GCNNGC 4 cut(s) 19, 446, 940, 969
BstDEI CTNAG 4 cut(s) 83, 302, 761, 989
BstENI CCTNNNNNAGG 1 cut(s) 576
BstF5I GGATG 4 cut(s) 118, 357, 455, 1077
BstFNI CGCG 1 cut(s) 942
BstKTI GATC 5 cut(s) 91, 107, 466, 691, 946
BstMBI GATC 5 cut(s) 88, 104, 463, 688, 943
BstMWI GCNNNNNNNGC 3 cut(s) 122, 131, 140
BstNI CCWGG 2 cut(s) 335, 525
BstNSI RCATGY 3 cut(s) 21, 232, 448
BstSCI CCNGG 2 cut(s) 333, 523
BstSFI CTRYAG 1 cut(s) 1023
BstUI CGCG 1 cut(s) 942
BstV1I GCAGC 3 cut(s) 83, 91, 298
BstV2I GAAGAC 1 cut(s) 828
BstZ17I GTATAC 1 cut(s) 616
Bsu15I ATCGAT 1 cut(s) 474
BsuRI GGCC 3 cut(s) 273, 333, 550
BsuTUI ATCGAT 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 576
BtsCI GGATG 4 cut(s) 118, 357, 455, 1077
BtsI GCAGTG 1 cut(s) 755
BtsIMutI CAGTG 1 cut(s) 755
BtuMI TCGCGA 1 cut(s) 942
Cac8I GCNNGC 4 cut(s) 19, 446, 940, 969
CaiI CAGNNNCTG 1 cut(s) 1022
Cfr13I GGNCC 1 cut(s) 569
ClaI ATCGAT 1 cut(s) 474
Csp6I GTAC 2 cut(s) 232, 1014
CviAII CATG 5 cut(s) 18, 229, 235, 445, 947
CviQI GTAC 2 cut(s) 232, 1014
DdeI CTNAG 4 cut(s) 83, 302, 761, 989
DpnI GATC 5 cut(s) 90, 106, 465, 690, 945
DpnII GATC 5 cut(s) 88, 104, 463, 688, 943
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco147I AGGCCT 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 569
EcoNI CCTNNNNNAGG 1 cut(s) 576
EcoRI GAATTC 1 cut(s) 1131
EcoRII CCWGG 2 cut(s) 333, 523
FaeI CATG 5 cut(s) 21, 232, 238, 448, 950
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 1 cut(s) 907
FatI CATG 5 cut(s) 17, 228, 234, 444, 946
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 3 cut(s) 80, 97, 312
FokI GGATG 4 cut(s) 125, 364, 442, 1084
Fsp4HI GCNGC 3 cut(s) 80, 97, 312
FspBI CTAG 2 cut(s) 212, 800
GluI GCNGC 3 cut(s) 80, 97, 312
GsaI CCCAGC 1 cut(s) 894
GsuI CTGGAG 5 cut(s) 336, 507, 726, 732, 845
HaeIII GGCC 3 cut(s) 273, 333, 550
HapII CCGG 2 cut(s) 977, 1040
Hin1II CATG 5 cut(s) 21, 232, 238, 448, 950
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 4 cut(s) 4, 803, 820, 1168
HpaII CCGG 2 cut(s) 977, 1040
HphI GGTGA 3 cut(s) 83, 615, 721
Hpy166II GTNNAC 2 cut(s) 616, 1106
Hpy188I TCNGA 3 cut(s) 433, 787, 1031
Hpy188III TCNNGA 6 cut(s) 364, 398, 800, 824, 941, 1172
Hpy8I GTNNAC 2 cut(s) 616, 1106
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 4 cut(s) 3, 341, 745, 853
HpyCH4III ACNGT 1 cut(s) 1099
HpyCH4IV ACGT 1 cut(s) 672
HpyCH4V TGCA 7 cut(s) 17, 153, 410, 444, 656, 971, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 131, 140
HpyF3I CTNAG 4 cut(s) 83, 302, 761, 989
HpySE526I ACGT 1 cut(s) 672
Hsp92II CATG 5 cut(s) 21, 232, 238, 448, 950
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 5 cut(s) 88, 104, 463, 688, 943
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 3 cut(s) 745, 964, 1042
Lsp1109I GCAGC 3 cut(s) 83, 91, 298
LweI GCATC 4 cut(s) 103, 466, 735, 933
MaeI CTAG 2 cut(s) 212, 800
MaeII ACGT 1 cut(s) 672
MaeIII GTNAC 2 cut(s) 842, 910
MalI GATC 5 cut(s) 90, 106, 465, 690, 945
MbiI CCGCTC 1 cut(s) 494
MboI GATC 5 cut(s) 88, 104, 463, 688, 943
MboII GAAGA 4 cut(s) 48, 383, 433, 828
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 7 cut(s) 158, 325, 467, 733, 972, 1131, 1176
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 3 cut(s) 25, 273, 1009
Mox20I TGGCCA 1 cut(s) 333
MroXI GAANNNNTTC 1 cut(s) 359
MscI TGGCCA 1 cut(s) 333
MseI TTAA 2 cut(s) 279, 1183
MslI CAYNNNNRTG 1 cut(s) 233
Msp20I TGGCCA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 2 cut(s) 977, 1040
MspR9I CCNGG 2 cut(s) 335, 525
Mva1269I GAATGC 2 cut(s) 359, 412
MvaI CCWGG 2 cut(s) 335, 525
MvnI CGCG 1 cut(s) 942
MwoI GCNNNNNNNGC 3 cut(s) 122, 131, 140
NdeII GATC 5 cut(s) 88, 104, 463, 688, 943
NlaIII CATG 5 cut(s) 21, 232, 238, 448, 950
NlaIV GGNNCC 1 cut(s) 516
NmeAIII GCCGAG 1 cut(s) 800
NruI TCGCGA 1 cut(s) 942
NspI RCATGY 3 cut(s) 21, 232, 448
NspV TTCGAA 2 cut(s) 7, 264
PaeI GCATGC 2 cut(s) 21, 448
PceI AGGCCT 1 cut(s) 550
PciI ACATGT 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 697
PctI GAATGC 2 cut(s) 359, 412
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 4, 820, 1168
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 3 cut(s) 81, 98, 313
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
PscI ACATGT 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 333, 523
PspFI CCCAGC 1 cut(s) 890
PspGI CCWGG 2 cut(s) 333, 523
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 1 cut(s) 569
PstI CTGCAG 1 cut(s) 1027
PstNI CAGNNNCTG 1 cut(s) 1022
RruI TCGCGA 1 cut(s) 942
RsaI GTAC 2 cut(s) 233, 1015
RsaNI GTAC 2 cut(s) 232, 1014
RseI CAYNNNNRTG 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 279, 1183
SatI GCNGC 3 cut(s) 80, 97, 312
Sau3AI GATC 5 cut(s) 88, 104, 463, 688, 943
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 2 cut(s) 335, 525
SfaNI GCATC 4 cut(s) 103, 466, 735, 933
SfcI CTRYAG 1 cut(s) 1023
SfuI TTCGAA 2 cut(s) 7, 264
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 22, 495
SmoI CTYRAG 2 cut(s) 22, 495
SphI GCATGC 2 cut(s) 21, 448
Sse9I AATT 7 cut(s) 158, 325, 467, 733, 972, 1131, 1176
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 3 cut(s) 94, 492, 631
SspI AATATT 1 cut(s) 295
SspMI CTAG 2 cut(s) 212, 800
StuI AGGCCT 1 cut(s) 550
StyD4I CCNGG 2 cut(s) 333, 523
TaaI ACNGT 1 cut(s) 1099
TaiI ACGT 1 cut(s) 675
TaqI TCGA 5 cut(s) 7, 264, 474, 675, 916
TasI AATT 7 cut(s) 158, 325, 467, 733, 972, 1131, 1176
TatI WGTACW 2 cut(s) 231, 1013
TfiI GAWTC 3 cut(s) 4, 820, 1168
Tru1I TTAA 2 cut(s) 279, 1183
Tru9I TTAA 2 cut(s) 279, 1183
TscAI CASTG 1 cut(s) 762
TseI GCWGC 3 cut(s) 79, 96, 311
TspDTI ATGAA 7 cut(s) 254, 360, 368, 434, 841, 999, 1017
TspRI CASTG 1 cut(s) 762
VpaK11BI GGWCC 1 cut(s) 569
XagI CCTNNNNNAGG 1 cut(s) 576
XapI RAATTY 2 cut(s) 158, 1131
XbaI TCTAGA 1 cut(s) 799
XceI RCATGY 3 cut(s) 21, 232, 448
XmiI GTMKAC 1 cut(s) 615
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 2 cut(s) 212, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.