Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008582

Physical Location & Seq

Genomic Coordinates Reverse (-)

6713699 .. 6716366

Gene Structure 2668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGATTCGAAGGACTGCATGCTGGAGTAAGCTGGTTCAATCTGTTCGAGTTGGCTCTTCGTCATCTTTGCCAACCAAGCAGCTTCGAGATCACCGCTGCTTTGGATCAGGGGCTGCTTCTAACGCAGAACAAGCATGTGAAGCATCTGTGTGCAGTAAATTTGGTAAGAATGAGTATGCTGATGTGGATTGGGATAATCTTGGATTTGGTCTAGTGCCAACTGATTACATGTACATGATGAAATGTTCCAACAACGGGATATTCGAACAAGGCCAACTTAATCGTTATGGAAATATTGAACTAAGCCCTGCTGCTGGAGTTTTGAATTATGGCCAGGGTATATATGAAGGGATGAAAGCATTCAGGAATGAAGATGGCAATCTCCTTATCTTTCGTCCAGACCAGAATGCAATGCGAATGAAGATTGGTTCAGAAAGAATGTGCATGCCCTCGCCATCCCTTGATCAATTTATCGATGCTGTGAAGCAAACTGCTCAAGCTAACAAGTGTTGGGTTCCCCCTCCAGGAAAAGGGTCTTTATATATTAGGCCTCTACTTATAGGAAGTGGTCCTATATTAGGTTTAGGCACGTCGCCTGAATACACATTCCTTGTATACGCTTCACCAGTCCGCAACTATTTCAAGGAGGGTTCTGCACCTTTGAGCATATATGTCGAGGAGGAATATGATCGTTCCTCTCGTGGTGGGGCTGGAGGTGTCAAAAGCATCACCAATTATGCTCCAGTTTTGAAGGCACTACTCAGAGCAAAGAGCCGAGGATTTTCTGATGTGTTATATCTAGACTCGGTAAATAAAAAGAATCTGGAGGAGGTCTCTTCTTGTAACATTTTCATTGTGAAGGGCAATGTTATTTCAACTCCTGCAACGGCTGGGACTATACTATCAGGGGTAACTCGAAGAAGCATCATTGAAATCGCTCGCGATCATGGTTATCAGGTTGAGGAGCGTGCAATTCCGGTAGATGAACTGAGTGAAGCTGATGAAGTATTCTGTACAGGAACTGCAGTCGGTGTTGCTCCTGTGGGAAACATTACATATAAAGATAAAAGGATGGAATACAAAACAGGTGCTCAAACTGTTTGTCCACAGCTCTACTCAACTCTCATAGGAATTCAAACGGGTCGTATTGAGGATAAGAAAGGCTGGATTCTTGAAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071669

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

394

Amino Acids

43.16

Weight (kDa)

7.94

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	113 - 351	5e-36	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10070 AT1G10070 AT1G10070
fragaria_vesca	FvH4_2g32430
malus_domestica	MD08G1075600.v1.1 MD15G1063100.v1.1
prunus_persica	Prupe.1G417100_v2.0.a1
pyrus_communis	pycom08g06240 pycom15g05970
rosa_chinensis	RchiOBHm_Chr3g0458081 RchiOBHm_Chr6g0310241
rosa_laevigata	RLG00000010496
rosa_multiflora	Rmu_sc0002348.1_g000024 Rmu_sc0008163.1_g000019
rosa_roxburghii	Rroxscaffold_7G00158710
rosa_rugosa	Rorug06G0378400
rosa_samantha	Rh3BG088200 Rh3CG088800 Rh3DG089100 Rh6AG492600 Rh6DG493400
rosa_wichuraiana	Rw3G007260 Rw6G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	615
AccII	CGCG	1 cut(s)	942
AciI	CCGC	2 cut(s)	94, 631
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	158, 1131
AfaI	GTAC	2 cut(s)	233, 1015
AfiI	CCNNNNNNNGG	5 cut(s)	255, 314, 524, 530, 578
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	9 cut(s)	38, 299, 325, 643, 751, 876, 932, 1136, 1175
AjiI	CACGTC	1 cut(s)	591
AjnI	CCWGG	2 cut(s)	333, 523
AluBI	AGCT	5 cut(s)	31, 82, 500, 998, 1111
AluI	AGCT	5 cut(s)	31, 82, 500, 998, 1111
Alw21I	GWGCWC	1 cut(s)	1093
Alw26I	GTCTC	1 cut(s)	838
AlwI	GGATC	1 cut(s)	112
AlwNI	CAGNNNCTG	2 cut(s)	113, 1022
AoxI	GGCC	3 cut(s)	271, 331, 548
ApeKI	GCWGC	4 cut(s)	79, 96, 113, 311
ApoI	RAATTY	2 cut(s)	158, 1131
ArsI	GACNNNNNNTTYG	2 cut(s)	1087, 1119
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	3 cut(s)	83, 615, 721
AsuII	TTCGAA	2 cut(s)	7, 264
AvaII	GGWCC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	333
BauI	CACGAG	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	1093
BbvI	GCAGC	4 cut(s)	83, 91, 100, 298
BccI	CCATC	3 cut(s)	368, 463, 1066
BceAI	ACGGC	1 cut(s)	903
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BciT130I	CCWGG	2 cut(s)	335, 525
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	838
BfaI	CTAG	2 cut(s)	212, 800
BfmI	CTRYAG	1 cut(s)	1023
BisI	GCNGC	4 cut(s)	80, 97, 114, 312
BlsI	GCNGC	4 cut(s)	81, 98, 115, 313
Bme1390I	CCNGG	2 cut(s)	335, 525
Bme18I	GGWCC	1 cut(s)	569
BmgBI	CACGTC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	2 cut(s)	335, 525
BmsI	GCATC	4 cut(s)	152, 466, 735, 933
BplI	GAGNNNNNCTC	2 cut(s)	818, 850
BpmI	CTGGAG	6 cut(s)	43, 336, 507, 726, 732, 845
Bpu14I	TTCGAA	2 cut(s)	7, 264
BpuEI	CTTGAG	1 cut(s)	480
Bsa29I	ATCGAT	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	838
BsaJI	CCNNGG	2 cut(s)	334, 775
BsaWI	WCCGGW	1 cut(s)	976
Bsc4I	CCNNNNNNNGG	5 cut(s)	255, 314, 524, 530, 578
Bse1I	ACTGG	2 cut(s)	626, 743
Bse3DI	GCAATG	2 cut(s)	417, 871
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	335, 525
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	334, 775
BseGI	GGATG	3 cut(s)	357, 455, 1077
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	5 cut(s)	255, 314, 524, 530, 578
BseMI	GCAATG	2 cut(s)	417, 871
BseMII	CTCAG	2 cut(s)	775, 980
BseNI	ACTGG	2 cut(s)	626, 743
BseRI	GAGGAG	3 cut(s)	692, 842, 977
BseXI	GCAGC	4 cut(s)	83, 91, 100, 298
BseYI	CCCAGC	1 cut(s)	890
BsgI	GTGCAG	2 cut(s)	172, 639
Bsh1236I	CGCG	1 cut(s)	942
BshFI	GGCC	3 cut(s)	273, 333, 550
BshVI	ATCGAT	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	1093
BsiSI	CCGG	1 cut(s)	977
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	5 cut(s)	255, 314, 524, 530, 578
BsmAI	GTCTC	1 cut(s)	838
BsmFI	GGGAC	1 cut(s)	907
BsmI	GAATGC	2 cut(s)	359, 412
BsnI	GGCC	3 cut(s)	273, 333, 550
Bso31I	GGTCTC	1 cut(s)	838
Bsp119I	TTCGAA	2 cut(s)	7, 264
Bsp1286I	GDGCHC	1 cut(s)	1093
Bsp1407I	TGTACA	2 cut(s)	231, 1013
Bsp143I	GATC	5 cut(s)	88, 104, 463, 688, 943
Bsp68I	TCGCGA	1 cut(s)	942
BspACI	CCGC	2 cut(s)	94, 631
BspANI	GGCC	3 cut(s)	273, 333, 550
BspCNI	CTCAG	2 cut(s)	774, 981
BspDI	ATCGAT	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	942
BspLI	GGNNCC	1 cut(s)	516
BspMAI	CTGCAG	1 cut(s)	1027
BspPI	GGATC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	61
BspT104I	TTCGAA	2 cut(s)	7, 264
BspTNI	GGTCTC	1 cut(s)	838
BsrDI	GCAATG	2 cut(s)	417, 871
BsrGI	TGTACA	2 cut(s)	231, 1013
BsrI	ACTGG	2 cut(s)	626, 743
BssECI	CCNNGG	2 cut(s)	334, 775
BssMI	GATC	5 cut(s)	88, 104, 463, 688, 943
BssNAI	GTATAC	1 cut(s)	616
BssSI	CACGAG	1 cut(s)	699
Bst1107I	GTATAC	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	699
Bst2UI	CCWGG	2 cut(s)	335, 525
Bst4CI	ACNGT	1 cut(s)	1099
Bst6I	CTCTTC	2 cut(s)	61, 841
BstAUI	TGTACA	2 cut(s)	231, 1013
BstBI	TTCGAA	2 cut(s)	7, 264
BstC8I	GCNNGC	4 cut(s)	19, 446, 940, 969
BstDEI	CTNAG	3 cut(s)	302, 761, 989
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	357, 455, 1077
BstFNI	CGCG	1 cut(s)	942
BstKTI	GATC	5 cut(s)	91, 107, 466, 691, 946
BstMAI	GTCTC	1 cut(s)	838
BstMBI	GATC	5 cut(s)	88, 104, 463, 688, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 122, 131, 140
BstNI	CCWGG	2 cut(s)	335, 525
BstNSI	RCATGY	4 cut(s)	21, 138, 232, 448
BstSCI	CCNGG	2 cut(s)	333, 523
BstSFI	CTRYAG	1 cut(s)	1023
BstUI	CGCG	1 cut(s)	942
BstV1I	GCAGC	4 cut(s)	83, 91, 100, 298
BstZ17I	GTATAC	1 cut(s)	616
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	273, 333, 550
BsuTUI	ATCGAT	1 cut(s)	474
BtrI	CACGTC	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	357, 455, 1077
BtuMI	TCGCGA	1 cut(s)	942
Cac8I	GCNNGC	4 cut(s)	19, 446, 940, 969
CaiI	CAGNNNCTG	2 cut(s)	113, 1022
Cfr13I	GGNCC	1 cut(s)	569
ClaI	ATCGAT	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	232, 1014
CviAII	CATG	6 cut(s)	18, 135, 229, 235, 445, 947
CviQI	GTAC	2 cut(s)	232, 1014
DdeI	CTNAG	3 cut(s)	302, 761, 989
DpnI	GATC	5 cut(s)	90, 106, 465, 690, 945
DpnII	GATC	5 cut(s)	88, 104, 463, 688, 943
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	61, 841
EarI	CTCTTC	2 cut(s)	61, 841
Eco147I	AGGCCT	1 cut(s)	550
Eco31I	GGTCTC	1 cut(s)	838
Eco47I	GGWCC	1 cut(s)	569
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRI	GAATTC	1 cut(s)	1131
EcoRII	CCWGG	2 cut(s)	333, 523
FaeI	CATG	6 cut(s)	21, 138, 232, 238, 448, 950
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	6 cut(s)	17, 134, 228, 234, 444, 946
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	4 cut(s)	80, 97, 114, 312
FokI	GGATG	3 cut(s)	364, 442, 1084
Fsp4HI	GCNGC	4 cut(s)	80, 97, 114, 312
FspBI	CTAG	2 cut(s)	212, 800
GluI	GCNGC	4 cut(s)	80, 97, 114, 312
GsaI	CCCAGC	1 cut(s)	894
GsuI	CTGGAG	6 cut(s)	43, 336, 507, 726, 732, 845
HaeIII	GGCC	3 cut(s)	273, 333, 550
HapII	CCGG	1 cut(s)	977
Hin1II	CATG	6 cut(s)	21, 138, 232, 238, 448, 950
HinfI	GANTC	4 cut(s)	4, 803, 820, 1168
HpaII	CCGG	1 cut(s)	977
HphI	GGTGA	3 cut(s)	83, 615, 721
Hpy166II	GTNNAC	2 cut(s)	616, 1106
Hpy188I	TCNGA	3 cut(s)	433, 764, 787
Hpy188III	TCNNGA	7 cut(s)	86, 364, 398, 800, 824, 941, 1172
Hpy8I	GTNNAC	2 cut(s)	616, 1106
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	4 cut(s)	3, 341, 745, 853
HpyCH4III	ACNGT	1 cut(s)	1099
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	8 cut(s)	17, 153, 410, 444, 656, 884, 971, 1025
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 122, 131, 140
HpyF3I	CTNAG	3 cut(s)	302, 761, 989
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	6 cut(s)	21, 138, 232, 238, 448, 950
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	5 cut(s)	88, 104, 463, 688, 943
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	3 cut(s)	745, 964, 1042
Lsp1109I	GCAGC	4 cut(s)	83, 91, 100, 298
LweI	GCATC	4 cut(s)	152, 466, 735, 933
MaeI	CTAG	2 cut(s)	212, 800
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	2 cut(s)	842, 910
MalI	GATC	5 cut(s)	90, 106, 465, 690, 945
MboI	GATC	5 cut(s)	88, 104, 463, 688, 943
MboII	GAAGA	5 cut(s)	48, 383, 433, 828, 930
MhlI	GDGCHC	1 cut(s)	1093
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	7 cut(s)	158, 325, 467, 733, 972, 1131, 1176
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	1 cut(s)	273
Mox20I	TGGCCA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	2 cut(s)	148, 233
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	977
MspR9I	CCNGG	2 cut(s)	335, 525
Mva1269I	GAATGC	2 cut(s)	359, 412
MvaI	CCWGG	2 cut(s)	335, 525
MvnI	CGCG	1 cut(s)	942
MwoI	GCNNNNNNNGC	4 cut(s)	76, 122, 131, 140
NdeII	GATC	5 cut(s)	88, 104, 463, 688, 943
NlaIII	CATG	6 cut(s)	21, 138, 232, 238, 448, 950
NlaIV	GGNNCC	1 cut(s)	516
NmeAIII	GCCGAG	1 cut(s)	800
NruI	TCGCGA	1 cut(s)	942
NspI	RCATGY	4 cut(s)	21, 138, 232, 448
NspV	TTCGAA	2 cut(s)	7, 264
PaeI	GCATGC	2 cut(s)	21, 448
PceI	AGGCCT	1 cut(s)	550
PciI	ACATGT	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 697
PctI	GAATGC	2 cut(s)	359, 412
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	4, 820, 1168
PfoI	TCCNGGA	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	81, 98, 115, 313
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	333, 523
PspFI	CCCAGC	1 cut(s)	890
PspGI	CCWGG	2 cut(s)	333, 523
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	1027
PstNI	CAGNNNCTG	2 cut(s)	113, 1022
RruI	TCGCGA	1 cut(s)	942
RsaI	GTAC	2 cut(s)	233, 1015
RsaNI	GTAC	2 cut(s)	232, 1014
RseI	CAYNNNNRTG	2 cut(s)	148, 233
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	4 cut(s)	80, 97, 114, 312
Sau3AI	GATC	5 cut(s)	88, 104, 463, 688, 943
Sau96I	GGNCC	1 cut(s)	569
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	2 cut(s)	335, 525
SduI	GDGCHC	1 cut(s)	1093
SfaNI	GCATC	4 cut(s)	152, 466, 735, 933
SfcI	CTRYAG	1 cut(s)	1023
SfuI	TTCGAA	2 cut(s)	7, 264
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	2 cut(s)	148, 233
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
SphI	GCATGC	2 cut(s)	21, 448
Sse9I	AATT	7 cut(s)	158, 325, 467, 733, 972, 1131, 1176
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	2 cut(s)	94, 631
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	2 cut(s)	212, 800
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	333, 523
TaaI	ACNGT	1 cut(s)	1099
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	7 cut(s)	7, 46, 85, 264, 474, 675, 916
TasI	AATT	7 cut(s)	158, 325, 467, 733, 972, 1131, 1176
TatI	WGTACW	2 cut(s)	231, 1013
TfiI	GAWTC	3 cut(s)	4, 820, 1168
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseI	GCWGC	4 cut(s)	79, 96, 113, 311
TspDTI	ATGAA	8 cut(s)	254, 360, 368, 384, 434, 841, 999, 1017
VpaK11BI	GGWCC	1 cut(s)	569
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	2 cut(s)	158, 1131
XbaI	TCTAGA	1 cut(s)	799
XceI	RCATGY	4 cut(s)	21, 138, 232, 448
XmiI	GTMKAC	1 cut(s)	615
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	212, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.