Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008582

Physical Location & Seq

Genomic Coordinates Forward (+)

4845847 .. 4847422

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06240.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTACATTATGAAATCTTCCAACGACGGGAAATTTGAACAAGGCCAACTTAGTCGTTATGGAAATATCGAACTTAACCCTGCTGCAGCAGTTTTAAATTATGGACAGGCAATATATGAAGGCACAAAAGCATACAGGAAGAGAGATGGGAAACTCCTCCTCTTTCGTCTAGACCAGAACGCGATTCGGATGAAGATTAGCGCGGAAAGAATGTGCATGCCTTCACTGTCAGTTGATCAATTCATTGATGCTGTAAAGCAAACAGCTCAAGCAAACAAGTGTTGGGTTCCTCCTCCAGGCAAAGGGTCTTTGTATATTAGGCTTCTACTTATAGGAAATGGCCCCATATTAGGCTTGGCACCATCACCTGAGTACACATTCCTTGTATATGCTTCCCCGGTCGGAAATTATTTCAAGGAGGGCTCTGCACCCTTGAACATATTTGTCGAGGAGGAGTATGATCGTGCCTCTCGTGGCGGAGCTGGAGGTGTCAAAGGCAGTACCAATTATGCCCCGGTTTTGAAGGCACTAACTAGAGCAAAAAGCAGGGGATTTTCGGATGTTCTATATCTTGATTCGGTACACAACAAAAATCTGGAGGAGGTCTCTTCTTGCAACATTTTCATTGTGAAAGACAATGTAATTTCAACTCCTGCCACGTCGGGGACTATTCTTTCGGGAGTTACTCGAAAAAGCGTTATTGAAATAGCTCGTGATCATGGTTACCAGGTCGAGGAACGCGTTATTCCGGTGGACGAATTGAGTGAAGCCGATGAAGTGTTCTGCACTGGAACTGCTGTTGGTGTTGCTATCGTGGGCAGCATTAGTTACAAAGGCCAAAGGATGGAGTACAAAACTGGTGCTAAGACTGTAAGTCCACAACTTTACTCAACCCTAGTAAGAATTCAAACGGGACAGATTGAGGAAAAGAAAGGCTGGATTATGGAAATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071669

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

319

Amino Acids

34.87

Weight (kDa)

8.49

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10070 AT1G10070 AT1G10070
fragaria_vesca	FvH4_2g32430
malus_domestica	MD08G1075600.v1.1 MD15G1063100.v1.1
prunus_persica	Prupe.1G417100_v2.0.a1
pyrus_communis	pycom08g06240 pycom15g05970
rosa_chinensis	RchiOBHm_Chr3g0458081 RchiOBHm_Chr6g0310241
rosa_laevigata	RLG00000010496
rosa_multiflora	Rmu_sc0002348.1_g000024 Rmu_sc0008163.1_g000019
rosa_roxburghii	Rroxscaffold_7G00158710
rosa_rugosa	Rorug06G0378400
rosa_samantha	Rh3BG088200 Rh3CG088800 Rh3DG089100 Rh6AG492600 Rh6DG493400
rosa_wichuraiana	Rw3G007260 Rw6G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	844
AccII	CGCG	3 cut(s)	182, 203, 741
AciI	CCGC	2 cut(s)	203, 477
AcsI	RAATTY	2 cut(s)	32, 903
AfaI	GTAC	5 cut(s)	5, 374, 502, 582, 851
AfiI	CCNNNNNNNGG	7 cut(s)	27, 296, 302, 350, 663, 733, 844
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	7 cut(s)	38, 415, 436, 523, 648, 704, 908
AhdI	GACNNNNNGTC	1 cut(s)	873
AjiI	CACGTC	1 cut(s)	660
AjnI	CCWGG	2 cut(s)	295, 726
AluBI	AGCT	3 cut(s)	266, 482, 710
AluI	AGCT	3 cut(s)	266, 482, 710
Alw26I	GTCTC	1 cut(s)	610
AoxI	GGCC	3 cut(s)	43, 340, 835
ApeKI	GCWGC	3 cut(s)	83, 86, 819
ApoI	RAATTY	2 cut(s)	32, 903
ArsI	GACNNNNNNTTYG	4 cut(s)	17, 49, 658, 690
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	341
AsuC2I	CCSGG	2 cut(s)	398, 515
AsuHPI	GGTGA	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	425
BauI	CACGAG	2 cut(s)	471, 711
BbvI	GCAGC	3 cut(s)	70, 98, 831
BccI	CCATC	3 cut(s)	140, 370, 838
BciT130I	CCWGG	2 cut(s)	297, 728
BclI	TGATCA	2 cut(s)	235, 715
BcnI	CCSGG	2 cut(s)	398, 515
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	3 cut(s)	170, 534, 896
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	3 cut(s)	84, 87, 820
BlsI	GCNGC	3 cut(s)	85, 88, 821
Bme1390I	CCNGG	4 cut(s)	297, 398, 515, 728
BmeRI	GACNNNNNGTC	1 cut(s)	873
BmgBI	CACGTC	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	3 cut(s)	288, 343, 360
BmrFI	CCNGG	4 cut(s)	297, 398, 515, 728
BmsI	GCATC	1 cut(s)	238
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
BpmI	CTGGAG	3 cut(s)	279, 504, 617
BpuEI	CTTGAG	1 cut(s)	252
BpuMI	CCSGG	2 cut(s)	398, 515
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	2 cut(s)	396, 513
BsaWI	WCCGGW	1 cut(s)	748
Bsc4I	CCNNNNNNNGG	7 cut(s)	27, 296, 302, 350, 663, 733, 844
Bse1I	ACTGG	2 cut(s)	793, 862
BseBI	CCWGG	2 cut(s)	297, 728
BseDI	CCNNGG	2 cut(s)	396, 513
BseGI	GGATG	3 cut(s)	195, 565, 849
BseLI	CCNNNNNNNGG	7 cut(s)	27, 296, 302, 350, 663, 733, 844
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	793, 862
BseRI	GAGGAG	6 cut(s)	146, 149, 282, 464, 467, 614
BseXI	GCAGC	3 cut(s)	70, 98, 831
BsgI	GTGCAG	2 cut(s)	411, 769
Bsh1236I	CGCG	3 cut(s)	182, 203, 741
Bsh1285I	CGRYCG	1 cut(s)	402
BshFI	GGCC	3 cut(s)	45, 342, 837
BshNI	GGYRCC	1 cut(s)	358
BsiEI	CGRYCG	1 cut(s)	402
BsiSI	CCGG	3 cut(s)	398, 515, 749
BslFI	GGGAC	2 cut(s)	679, 927
BslI	CCNNNNNNNGG	7 cut(s)	27, 296, 302, 350, 663, 733, 844
BsmAI	GTCTC	1 cut(s)	610
BsmFI	GGGAC	2 cut(s)	679, 927
BsnI	GGCC	3 cut(s)	45, 342, 837
Bso31I	GGTCTC	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	235, 460, 715
BspACI	CCGC	2 cut(s)	203, 477
BspANI	GGCC	3 cut(s)	45, 342, 837
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	3 cut(s)	182, 203, 741
BspLI	GGNNCC	3 cut(s)	288, 343, 360
BspMAI	CTGCAG	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	610
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	793, 862
BssECI	CCNNGG	2 cut(s)	396, 513
BssMI	GATC	3 cut(s)	235, 460, 715
BssSI	CACGAG	2 cut(s)	471, 711
Bst2BI	CACGAG	2 cut(s)	471, 711
Bst2UI	CCWGG	2 cut(s)	297, 728
Bst4CI	ACNGT	2 cut(s)	228, 871
Bst6I	CTCTTC	2 cut(s)	134, 613
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	3 cut(s)	50, 369, 864
BstEII	GGTNACC	1 cut(s)	722
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	3 cut(s)	195, 565, 849
BstFNI	CGCG	3 cut(s)	182, 203, 741
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	238, 463, 718
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	3 cut(s)	235, 460, 715
BstMCI	CGRYCG	1 cut(s)	402
BstNI	CCWGG	2 cut(s)	297, 728
BstNSI	RCATGY	1 cut(s)	220
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	4 cut(s)	295, 396, 513, 726
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	3 cut(s)	182, 203, 741
BstV1I	GCAGC	3 cut(s)	70, 98, 831
BsuRI	GGCC	3 cut(s)	45, 342, 837
BtrI	CACGTC	1 cut(s)	660
BtsCI	GGATG	3 cut(s)	195, 565, 849
BtsIMutI	CAGTG	2 cut(s)	224, 786
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	341
CsiI	ACCWGGT	1 cut(s)	726
Csp6I	GTAC	5 cut(s)	4, 373, 501, 581, 850
CviAII	CATG	2 cut(s)	217, 719
CviQI	GTAC	5 cut(s)	4, 373, 501, 581, 850
DdeI	CTNAG	3 cut(s)	50, 369, 864
DpnI	GATC	3 cut(s)	237, 462, 717
DpnII	GATC	3 cut(s)	235, 460, 715
DraI	TTTAAA	1 cut(s)	96
DriI	GACNNNNNGTC	1 cut(s)	873
Eam1104I	CTCTTC	2 cut(s)	134, 613
Eam1105I	GACNNNNNGTC	1 cut(s)	873
EarI	CTCTTC	2 cut(s)	134, 613
EciI	GGCGGA	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	610
Eco91I	GGTNACC	1 cut(s)	722
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoO65I	GGTNACC	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	903
EcoRII	CCWGG	2 cut(s)	295, 726
EcoT38I	GRGCYC	1 cut(s)	425
FaeI	CATG	2 cut(s)	220, 722
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	2 cut(s)	679, 927
FatI	CATG	2 cut(s)	216, 718
FbaI	TGATCA	2 cut(s)	235, 715
Fnu4HI	GCNGC	3 cut(s)	84, 87, 820
FokI	GGATG	3 cut(s)	202, 572, 856
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	3 cut(s)	84, 87, 820
FspBI	CTAG	3 cut(s)	170, 534, 896
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	3 cut(s)	84, 87, 820
GsuI	CTGGAG	3 cut(s)	279, 504, 617
HaeIII	GGCC	3 cut(s)	45, 342, 837
HapII	CCGG	3 cut(s)	398, 515, 749
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	220, 722
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	184, 575
HpaII	CCGG	3 cut(s)	398, 515, 749
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	4 cut(s)	375, 583, 754, 878
Hpy188I	TCNGA	3 cut(s)	189, 404, 559
Hpy188III	TCNNGA	5 cut(s)	170, 572, 596, 678, 713
Hpy8I	GTNNAC	4 cut(s)	375, 583, 754, 878
Hpy99I	CGWCG	2 cut(s)	29, 664
HpyAV	CCTTC	3 cut(s)	113, 231, 517
HpyCH4III	ACNGT	2 cut(s)	228, 871
HpyCH4IV	ACGT	1 cut(s)	659
HpyCH4V	TGCA	5 cut(s)	86, 216, 428, 615, 786
HpyF3I	CTNAG	3 cut(s)	50, 369, 864
HpySE526I	ACGT	1 cut(s)	659
Hsp92II	CATG	2 cut(s)	220, 722
HspAI	GCGC	1 cut(s)	201
Ksp22I	TGATCA	2 cut(s)	235, 715
Kzo9I	GATC	3 cut(s)	235, 460, 715
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	3 cut(s)	70, 98, 831
LweI	GCATC	1 cut(s)	238
MabI	ACCWGGT	1 cut(s)	726
MaeI	CTAG	3 cut(s)	170, 534, 896
MaeII	ACGT	1 cut(s)	659
MaeIII	GTNAC	3 cut(s)	682, 722, 827
MalI	GATC	3 cut(s)	237, 462, 717
MboI	GATC	3 cut(s)	235, 460, 715
MboII	GAAGA	4 cut(s)	9, 151, 205, 600
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	9 cut(s)	32, 97, 239, 406, 505, 642, 758, 903, 948
MluI	ACGCGT	1 cut(s)	739
MmeI	TCCRAC	2 cut(s)	45, 382
MseI	TTAA	2 cut(s)	75, 95
MspI	CCGG	3 cut(s)	398, 515, 749
MspR9I	CCNGG	4 cut(s)	297, 398, 515, 728
MvaI	CCWGG	2 cut(s)	297, 728
MvnI	CGCG	3 cut(s)	182, 203, 741
NciI	CCSGG	2 cut(s)	398, 515
NdeII	GATC	3 cut(s)	235, 460, 715
NlaIII	CATG	2 cut(s)	220, 722
NlaIV	GGNNCC	3 cut(s)	288, 343, 360
NspI	RCATGY	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	2 cut(s)	469, 738
PfeI	GAWTC	2 cut(s)	184, 575
PflMI	CCANNNNNTGG	1 cut(s)	844
PkrI	GCNGC	3 cut(s)	85, 88, 821
Psp6I	CCWGG	2 cut(s)	295, 726
PspEI	GGTNACC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	295, 726
PspN4I	GGNNCC	3 cut(s)	288, 343, 360
PspPI	GGNCC	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	88
RsaI	GTAC	5 cut(s)	5, 374, 502, 582, 851
RsaNI	GTAC	5 cut(s)	4, 373, 501, 581, 850
SaqAI	TTAA	2 cut(s)	75, 95
SatI	GCNGC	3 cut(s)	84, 87, 820
Sau3AI	GATC	3 cut(s)	235, 460, 715
Sau96I	GGNCC	1 cut(s)	341
ScrFI	CCNGG	4 cut(s)	297, 398, 515, 728
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	8 cut(s)	268, 370, 484, 490, 606, 662, 712, 732
SexAI	ACCWGGT	1 cut(s)	726
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	9 cut(s)	32, 97, 239, 406, 505, 642, 758, 903, 948
SsiI	CCGC	2 cut(s)	203, 477
SspMI	CTAG	3 cut(s)	170, 534, 896
StyD4I	CCNGG	4 cut(s)	295, 396, 513, 726
TaaI	ACNGT	2 cut(s)	228, 871
TaiI	ACGT	1 cut(s)	662
TaqI	TCGA	4 cut(s)	69, 447, 688, 732
TasI	AATT	9 cut(s)	32, 97, 239, 406, 505, 642, 758, 903, 948
TatI	WGTACW	3 cut(s)	3, 372, 849
TfiI	GAWTC	2 cut(s)	184, 575
Tru1I	TTAA	2 cut(s)	75, 95
Tru9I	TTAA	2 cut(s)	75, 95
TscAI	CASTG	2 cut(s)	231, 793
TseI	GCWGC	3 cut(s)	83, 86, 819
TspDTI	ATGAA	6 cut(s)	26, 132, 206, 232, 613, 789
TspRI	CASTG	2 cut(s)	231, 793
Van91I	CCANNNNNTGG	1 cut(s)	844
XagI	CCTNNNNNAGG	1 cut(s)	294
XapI	RAATTY	2 cut(s)	32, 903
XbaI	TCTAGA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XspI	CTAG	3 cut(s)	170, 534, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.