Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008582

Physical Location & Seq

Genomic Coordinates Forward (+)

36195554 .. 36198406

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G417100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGATTCAAAGGATAACACGACTTCATAAGTTGGTTCGATCCATTAGAGTTGGTTCTTCATTATCTTCGTCATCCAAGCTTAGAGTTCACTGTTGCTTTGGTTCTGTGGCTGCATCTAATGCGGAACAAGCATGTGAACAATCTGTAGAAAGCTACAATGTTAAAAAGAATGAGTATGCCGATGTGGATTGGGATAATCTTGGATTTGGTTTAACGCCAACTGATTACATGTACGTTATGAAATGCTCCAACAATGGCACATTTGAAAAAGGCCAACTTAATCGTTATGGAAACATTGAACTCAACCCTGCTGCTGGAGTTCTAAATTATGGACAGGGTTTGTATGAAGGCACAAAAGCATACAGGAAGAAAGATGGGAATCTCATTCTCTTTCGTCCAGACCAGAATGCAATGCGGATGCAGTTTGGTGCAGAAAGAATGTGCATGCCCTCACCATCCGTCGATCAATTTGTTGATGCTGTGAAGCAAACAGTTCAAGCCAACAAGTGCTGGGTTCCTCCACCAGGGAAAGGGTCTTTGTATATTAGGCCTCTACTTATAGGAAGTGGTCCTATATTGGGTTTGGCTCCATCTCCTGAGTACACTTTCCTTGTATATGCTTCCCCTGTGAGGAACTATTTCAAGGAGGGCTCTGCACCCTTGAATATATACGTCGAGGAGGAGTATGATCGTGCCTCTCGCGGGGGAGCTGGAGGTGTCAAAAGCATTACCAATTATGCTCCAGTTTTGAAGGCACTACTCAGAGCTAAAAACAGAGGATTTTCGGATGTTCTGTATCTTGACTCGGTAAATAACAAAAATCTGGAGGAGGTCTCTTCTTGCAACATTTTCATTGTGAAGGGCAACCTTATTTCAACTCCGGCTGCAGTCGGGACGATTCTTCCCGGAGTTACTCGAAGAAGCATTATCGAAATTGCTCGTGATCTTTGTTACCAGGTTGAGGAACGTCCTATTCCGGTGGATGAATTGAATGAAGCTGATGAAGTGTTCTGCACAGGAACTGCTGTTGGGGTTGCCCCTGTGGGCAGCATTACTTGTCACGGCAAAAGGATGGAGTATAAAACGGGCGCTCAGACTGTGTGCACACAACTTTACTCAACCCTCGTAGGAATTCAAACGGGTCATATTGAGGATAAGAAAGCCTGGATTGTTGAAATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071669

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

395

Amino Acids

43.3

Weight (kDa)

8.19

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10070 AT1G10070 AT1G10070
fragaria_vesca	FvH4_2g32430
malus_domestica	MD08G1075600.v1.1 MD15G1063100.v1.1
prunus_persica	Prupe.1G417100_v2.0.a1
pyrus_communis	pycom08g06240 pycom15g05970
rosa_chinensis	RchiOBHm_Chr3g0458081 RchiOBHm_Chr6g0310241
rosa_laevigata	RLG00000010496
rosa_multiflora	Rmu_sc0002348.1_g000024 Rmu_sc0008163.1_g000019
rosa_roxburghii	Rroxscaffold_7G00158710
rosa_rugosa	Rorug06G0378400
rosa_samantha	Rh3BG088200 Rh3CG088800 Rh3DG089100 Rh6AG492600 Rh6DG493400
rosa_wichuraiana	Rw3G007260 Rw6G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	702
AciI	CCGC	3 cut(s)	122, 415, 702
AclWI	GGATC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	1131
AfaI	GTAC	2 cut(s)	233, 602
AfiI	CCNNNNNNNGG	7 cut(s)	314, 524, 530, 578, 630, 702, 961
AflIII	ACRYGT	1 cut(s)	228
AjnI	CCWGG	3 cut(s)	523, 954, 1163
AluBI	AGCT	5 cut(s)	79, 153, 710, 767, 998
AluI	AGCT	5 cut(s)	79, 153, 710, 767, 998
Alw21I	GWGCWC	1 cut(s)	1106
Alw26I	GTCTC	1 cut(s)	838
Alw44I	GTGCAC	1 cut(s)	1102
AlwI	GGATC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	1022
AoxI	GGCC	2 cut(s)	271, 548
ApaLI	GTGCAC	1 cut(s)	1102
ApeKI	GCWGC	4 cut(s)	110, 311, 884, 1047
ApoI	RAATTY	1 cut(s)	1131
Asp700I	GAANNNNTTC	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	1091
AspS9I	GGNCC	1 cut(s)	569
AsuC2I	CCSGG	1 cut(s)	906
AsuHPI	GGTGA	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	569
BaeGI	GKGCMC	1 cut(s)	1106
BanII	GRGCYC	1 cut(s)	653
BauI	CACGAG	1 cut(s)	939
Bbv12I	GWGCWC	1 cut(s)	1106
BbvI	GCAGC	4 cut(s)	97, 298, 871, 1059
BccI	CCATC	4 cut(s)	368, 463, 598, 1066
BceAI	ACGGC	1 cut(s)	1078
BciT130I	CCWGG	3 cut(s)	525, 956, 1165
BcnI	CCSGG	1 cut(s)	906
BcoDI	GTCTC	1 cut(s)	838
BfmI	CTRYAG	2 cut(s)	144, 885
BfoI	RGCGCY	1 cut(s)	1092
BisI	GCNGC	4 cut(s)	111, 312, 885, 1048
BlsI	GCNGC	4 cut(s)	112, 313, 886, 1049
Bme1390I	CCNGG	4 cut(s)	525, 906, 956, 1165
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	2 cut(s)	516, 588
BmrFI	CCNGG	4 cut(s)	525, 906, 956, 1165
BmsI	GCATC	3 cut(s)	122, 408, 466
BplI	GAGNNNNNCTC	2 cut(s)	818, 850
BpmI	CTGGAG	4 cut(s)	336, 726, 732, 845
BpuMI	CCSGG	1 cut(s)	906
BsaBI	GATNNNNATC	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	838
BsaJI	CCNNGG	1 cut(s)	524
BsaWI	WCCGGW	1 cut(s)	976
Bsc4I	CCNNNNNNNGG	7 cut(s)	314, 524, 530, 578, 630, 702, 961
Bse1I	ACTGG	1 cut(s)	743
Bse3DI	GCAATG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	3 cut(s)	525, 956, 1165
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	6 cut(s)	71, 423, 455, 793, 988, 1077
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	7 cut(s)	314, 524, 530, 578, 630, 702, 961
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	3 cut(s)	588, 775, 1106
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	3 cut(s)	692, 695, 842
BseSI	GKGCMC	1 cut(s)	1106
BseXI	GCAGC	4 cut(s)	97, 298, 871, 1059
BseYI	CCCAGC	1 cut(s)	510
BsgI	GTGCAG	3 cut(s)	450, 639, 997
Bsh1236I	CGCG	1 cut(s)	702
BshFI	GGCC	2 cut(s)	273, 550
BsiHKAI	GWGCWC	1 cut(s)	1106
BsiSI	CCGG	3 cut(s)	881, 906, 977
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	7 cut(s)	314, 524, 530, 578, 630, 702, 961
BsmAI	GTCTC	1 cut(s)	838
BsmFI	GGGAC	1 cut(s)	907
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	273, 550
Bso31I	GGTCTC	1 cut(s)	838
Bsp1286I	GDGCHC	2 cut(s)	653, 1106
Bsp143I	GATC	4 cut(s)	38, 463, 688, 943
BspACI	CCGC	3 cut(s)	122, 415, 702
BspANI	GGCC	2 cut(s)	273, 550
BspCNI	CTCAG	3 cut(s)	589, 774, 1105
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	516, 588
BspMAI	CTGCAG	1 cut(s)	889
BspPI	GGATC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	838
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	743
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	4 cut(s)	38, 463, 688, 943
BssSI	CACGAG	1 cut(s)	939
Bst2BI	CACGAG	1 cut(s)	939
Bst2UI	CCWGG	3 cut(s)	525, 956, 1165
Bst4CI	ACNGT	3 cut(s)	92, 493, 1099
Bst6I	CTCTTC	1 cut(s)	841
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	4 cut(s)	80, 597, 761, 1092
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	6 cut(s)	71, 423, 455, 793, 988, 1077
BstFNI	CGCG	1 cut(s)	702
BstH2I	RGCGCY	1 cut(s)	1092
BstHHI	GCGC	1 cut(s)	1091
BstKTI	GATC	4 cut(s)	41, 466, 691, 946
BstMAI	GTCTC	1 cut(s)	838
BstMBI	GATC	4 cut(s)	38, 463, 688, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 128
BstNI	CCWGG	3 cut(s)	525, 956, 1165
BstNSI	RCATGY	3 cut(s)	135, 232, 448
BstSCI	CCNGG	4 cut(s)	523, 904, 954, 1163
BstSFI	CTRYAG	2 cut(s)	144, 885
BstSLI	GKGCMC	1 cut(s)	1106
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	4 cut(s)	97, 298, 871, 1059
BsuRI	GGCC	2 cut(s)	273, 550
BtsCI	GGATG	6 cut(s)	71, 423, 455, 793, 988, 1077
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	446
CaiI	CAGNNNCTG	1 cut(s)	1022
CfoI	GCGC	1 cut(s)	1091
Cfr13I	GGNCC	1 cut(s)	569
CsiI	ACCWGGT	1 cut(s)	954
Csp6I	GTAC	2 cut(s)	232, 601
CviAII	CATG	3 cut(s)	132, 229, 445
CviQI	GTAC	2 cut(s)	232, 601
DdeI	CTNAG	4 cut(s)	80, 597, 761, 1092
DpnI	GATC	4 cut(s)	40, 465, 690, 945
DpnII	GATC	4 cut(s)	38, 463, 688, 943
Eam1104I	CTCTTC	1 cut(s)	841
EarI	CTCTTC	1 cut(s)	841
Eco147I	AGGCCT	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	653
Eco31I	GGTCTC	1 cut(s)	838
Eco47I	GGWCC	1 cut(s)	569
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	1131
EcoRII	CCWGG	3 cut(s)	523, 954, 1163
EcoT38I	GRGCYC	1 cut(s)	653
FaeI	CATG	3 cut(s)	135, 232, 448
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	3 cut(s)	131, 228, 444
FauI	CCCGC	1 cut(s)	695
Fnu4HI	GCNGC	4 cut(s)	111, 312, 885, 1048
FokI	GGATG	6 cut(s)	58, 430, 442, 800, 995, 1084
FriOI	GRGCYC	1 cut(s)	653
Fsp4HI	GCNGC	4 cut(s)	111, 312, 885, 1048
GlaI	GCGC	1 cut(s)	1090
GluI	GCNGC	4 cut(s)	111, 312, 885, 1048
GsaI	CCCAGC	1 cut(s)	514
GsuI	CTGGAG	4 cut(s)	336, 726, 732, 845
HaeII	RGCGCY	1 cut(s)	1092
HaeIII	GGCC	2 cut(s)	273, 550
HapII	CCGG	3 cut(s)	881, 906, 977
HhaI	GCGC	1 cut(s)	1091
Hin1II	CATG	3 cut(s)	135, 232, 448
Hin6I	GCGC	1 cut(s)	1089
HinP1I	GCGC	1 cut(s)	1089
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	4 cut(s)	4, 379, 803, 898
HpaII	CCGG	3 cut(s)	881, 906, 977
HphI	GGTGA	1 cut(s)	444
Hpy166II	GTNNAC	4 cut(s)	88, 137, 603, 1104
Hpy188I	TCNGA	3 cut(s)	764, 787, 1095
Hpy188III	TCNNGA	6 cut(s)	398, 596, 800, 824, 892, 941
Hpy8I	GTNNAC	4 cut(s)	88, 137, 603, 1104
Hpy99I	CGWCG	2 cut(s)	464, 677
HpyAV	CCTTC	3 cut(s)	341, 745, 853
HpyCH4III	ACNGT	3 cut(s)	92, 493, 1099
HpyCH4IV	ACGT	3 cut(s)	234, 672, 967
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 128
HpyF3I	CTNAG	4 cut(s)	80, 597, 761, 1092
HpySE526I	ACGT	3 cut(s)	234, 672, 967
Hsp92II	CATG	3 cut(s)	135, 232, 448
HspAI	GCGC	1 cut(s)	1089
Kzo9I	GATC	4 cut(s)	38, 463, 688, 943
LmnI	GCTCC	4 cut(s)	251, 592, 707, 745
Lsp1109I	GCAGC	4 cut(s)	97, 298, 871, 1059
LweI	GCATC	3 cut(s)	122, 408, 466
MabI	ACCWGGT	1 cut(s)	954
MaeII	ACGT	3 cut(s)	234, 672, 967
MaeIII	GTNAC	3 cut(s)	910, 950, 1058
MalI	GATC	4 cut(s)	40, 465, 690, 945
MboI	GATC	4 cut(s)	38, 463, 688, 943
MboII	GAAGA	6 cut(s)	48, 57, 379, 828, 893, 930
MhlI	GDGCHC	2 cut(s)	653, 1106
MluCI	AATT	7 cut(s)	325, 467, 733, 933, 986, 1131, 1176
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	3 cut(s)	162, 212, 279
MspI	CCGG	3 cut(s)	881, 906, 977
MspR9I	CCNGG	4 cut(s)	525, 906, 956, 1165
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	3 cut(s)	525, 956, 1165
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	2 cut(s)	119, 128
NciI	CCSGG	1 cut(s)	906
NdeII	GATC	4 cut(s)	38, 463, 688, 943
NlaIII	CATG	3 cut(s)	135, 232, 448
NlaIV	GGNNCC	2 cut(s)	516, 588
NmuCI	GTSAC	1 cut(s)	1058
NspI	RCATGY	3 cut(s)	135, 232, 448
PaeI	GCATGC	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	550
PciI	ACATGT	1 cut(s)	228
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	3 cut(s)	4, 379, 898
PfoI	TCCNGGA	1 cut(s)	904
PkrI	GCNGC	4 cut(s)	112, 313, 886, 1049
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	3 cut(s)	523, 954, 1163
PspFI	CCCAGC	1 cut(s)	510
PspGI	CCWGG	3 cut(s)	523, 954, 1163
PspN4I	GGNNCC	2 cut(s)	516, 588
PspPI	GGNCC	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	889
PstNI	CAGNNNCTG	1 cut(s)	1022
RsaI	GTAC	2 cut(s)	233, 602
RsaNI	GTAC	2 cut(s)	232, 601
SaqAI	TTAA	3 cut(s)	162, 212, 279
SatI	GCNGC	4 cut(s)	111, 312, 885, 1048
Sau3AI	GATC	4 cut(s)	38, 463, 688, 943
Sau96I	GGNCC	1 cut(s)	569
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	4 cut(s)	525, 906, 956, 1165
SduI	GDGCHC	2 cut(s)	653, 1106
SexAI	ACCWGGT	1 cut(s)	954
SfaNI	GCATC	3 cut(s)	122, 408, 466
SfcI	CTRYAG	2 cut(s)	144, 885
SinI	GGWCC	1 cut(s)	569
SphI	GCATGC	1 cut(s)	448
Sse9I	AATT	7 cut(s)	325, 467, 733, 933, 986, 1131, 1176
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	3 cut(s)	122, 415, 702
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	4 cut(s)	523, 904, 954, 1163
TaaI	ACNGT	3 cut(s)	92, 493, 1099
TaiI	ACGT	3 cut(s)	237, 675, 970
TaqI	TCGA	5 cut(s)	37, 462, 675, 916, 930
TasI	AATT	7 cut(s)	325, 467, 733, 933, 986, 1131, 1176
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	3 cut(s)	4, 379, 898
Tru1I	TTAA	3 cut(s)	162, 212, 279
Tru9I	TTAA	3 cut(s)	162, 212, 279
TscAI	CASTG	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	1058
TseI	GCWGC	4 cut(s)	110, 311, 884, 1047
Tsp45I	GTSAC	1 cut(s)	1058
TspDTI	ATGAA	8 cut(s)	14, 48, 254, 360, 841, 999, 1008, 1017
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	1102
VpaK11BI	GGWCC	1 cut(s)	569
XagI	CCTNNNNNAGG	1 cut(s)	522
XapI	RAATTY	1 cut(s)	1131
XceI	RCATGY	3 cut(s)	135, 232, 448
XmnI	GAANNNNTTC	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.