MD08G1113600.v1.1

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013421
Physical Location & Seq
Reverse (-)
10065226 .. 10069775
4550 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1113600.v1.1.491

Sequence Viewer

Length: 3057 bp
ATGTACAACTACAGTCCAATACTTGGACTTCATCTCTCTCTTCCTTCCTCTGTATCTTCTTCAATGGCTCACCTCTTCAGAGACCTCTCTTCACTGGGCCAATCTAAGAGGGGGACCACTGCCGCCACCACAACTACCGCCATACCACTCACCATACCCGACAAACCCATTGCCACAATGGGCACCGATCTCCCATCTCCTCTCGGCCAGCTCTCGGCCCAACTTAGCGACTCGGACCTCCGACTCACCGCCTACGAGATCTTCGTCGCCGCCTGCCGCACATCTACTGGAAAGGCCTTGACTTTCACACCCTCCGCCGCTGACTCGCCAATCCAGCACGCCAATTCTCCCAACGGCTCGCCCGCGCTGCAGAGATCGCTCACTTCCACTGCTGCCAGCAAGATGAAGAAGGCTTTGGGTCTCAAATCACCGGGCTCCGGCTCCAAGAAGAGTCCTGGGTCGGCCGGGTCCGGGGCCGGGGCCGGGTCGGGTCCCGGGAAGCCCAAAAGGGCTATGACGGTGGGTGAGCTGATGAGGATCCAAATGGGGATTTCTGAGGCTACTGACTCCAGAGTCCGGAGAGCTCTGCTTAGGATTTCTGCTTCACAGGTTGGAAGGCGAATTGAGTCAGTGGTGGTCCCACTGGAACTGCTACAGCAGCTCAAGTCCTCTGATTTCACTGACCAACAAGAATACGATGCATGGCAAAAAAGAACCCTCAAAATTCTTGAGGCCGGTCTCCTCTTGCATCCCCATGTGCCACTAGACAAGTCGAATAATGCTGCACAGAGGTTGCGCCAAATTATTAACGGGGCATTGGACAGGCCCTTTGAAACCGGTAGAAATAATGAGACTTTGCAGGTTCTTCGTAATGCTGTTACTGCTCTTGCGTCCAGGTCATCCGATGGTCTCTATGATACATCACATTGGGCAGATGGGTTACCATTGAATCTCCGGCTTTATGAGAGGCTTCTAGAAGCCTGCTTTGATCTTCACGACGAAACATCTATAATAGAGGAAGTTGACGAGCTAATGGAGCATATTAAGAAGACCTGGTCAATCCTTGGAATGAATCAGATGCTCCATAACCTTTGCTTTACTTGGGTTTTATTTCACCGTTTTGTTGCAACTGGTCAAGTAGAATTGGACCTATTGTACGCTGCTGATAGTCAGCTAGCTGAAGTTGCTAAAGATGCAAAGGCAACAAAGGATTCCGAGTTCTGCAAGATCTTGAGTTCGACATTGACTTCAATATTGGGTTGGGCAGAGAAGAGACTCCTTGCGTATCATGACACTTTTGATAACAGTAACATTGACACCATGCAGGCAATTGTTTCTCTGGGTGTAGTAGCAGCTAAGATTTTAGTTGAAGATATATCGAATGAGTACCGCAGGAGGAGAAAAAATGAAGTTGATGTTGCTCGTAGCAGGATAGACACTTATATCAGATCATCATTACGCACTGCTTTTGCTCAGAGAATGGAAAAGGCGGACTCAAGCAGGAGAGCATCAAGACACCAGCCTAAACCCCTTCCTGTTCTGGCCATCCTTGCAAAGGACGTTGGTGAGCTGGCAGTTAAGGAGAAAGAGGTGTTCAGTCCAATACTGAAGAGATGGCATCCTTTTGCGGCCGGGGTAGCTGTGGCAACCCTTCATGCATGCTATGCGAATGAGATTAAACAATTCATATCGGGTATAGTAGAGTTGACACCAGATGCTGTACAAGTTTTGATAGCTGCAGATAAGCTGGAGAAAGATCTTGTGCTGATAGCAGTTTTAGATTCCGTAGATAGTGATGACGGTGGCAAGGCAATAATTCGTGAGATGCCTCCTTACGAGGCTGAAACTGCAATTGCAAATCTGGTGAAAGTGTGGATTAAGACAAGAGTGGATAGACTGAAAGAATGGATTGATAGGAATCTAGAACAAGAGGTATGGAACCCACAAGTAAACGAAGACGGATATGCTCCATCTGCTGTTGAAGTTTTGCGAATCTTTGATGAAACTCTGGAAGCATTCTTTCAGCTGCCAATACCAATGCATCCTGCATTGCTTCCGGACTTGATGACCGGCCTTGATAGATGTCTTCAATACTACGTAACCAAGGCAAAATCTGGATGTGGATCTCGCAATACGTTTGTTCCCACTATTCCAGCATTGACCAGATGTAACATTGGATCAAAGTTCCAAGGATTTGGCAAAAAGAAGGAAAAATCACCAGTTCCTCAGAAGAGGAACTCTCAGGTTGCAACACTCAATGGGGATAACTCCTTTGGGATACCACAGATGTGTGTTTGTATAAACACACTGCAAAGAATCCGGAGTGAGTTGGAGGTTTTGGAGAAACGGATTATTACTCATCTCAGAAATTCAAAATCTGCTAATGAAGAAGACTTCTCGAATGGACTGGGGAAAAAGTTTGAACTCACACCTGCAGCTTGTGTGGAAGCAATCCAACAGCTTTGTGAGGCAGTGGCTTATAAAATGATCTTCCATGACTTAAGTCATGTTCTGTGGGATGGTTTGTACGTTGGGGAACCATCCTCTGGTAGGATAGACGCTTTTCTTGATGAGCTGGAGAAGAATTTACTCATCATATCTAACACTGTGCACGAAAGAGTTCGAACGCGGATTATTACTGACATAATGAGAGCGTCATTTGATGGATTCTTACTGGTTTTGCTTGCTGGAGGCCCCTCTCGTGCATTCTCTCGGCAGGATTCCCAAATAATAGAGGATGATTTCAAAGCCCTCAAAGATCTATTCTGGGCCAATGGGGATGGCTTGCCTTCTGAATTAATAGACAAGTTTTCAACAACAGTGAGAGGTGTGCTTCCTCTTTTCAAAACCGATACTGAGAGTCTTGTTGAACGGTTTAGACGTGTGACCTTGGAGTCATATGGCTCGTCCGCCAGGTCCAGACTCCCGTTGCCCCCAACTTCCGGGCAGTGGAACCCAACTGAACCAAACACGCTCCTCCGGGTGTTGTGCTACAGAAATGATGAAGCTGCTACCAAGTTTCTTAAGAAGACTTATAATCTGCCCAAGAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

1019

Amino Acids

112.69

Weight (kDa)

8.45

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 618 - 1017 1.3e-175 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25800
fragaria_vesca FvH4_2g35590 FvH4_2g35590
malus_domestica MD08G1113600.v1.1 MD15G1093300.v1.1
prunus_persica Prupe.1G448100_v2.0.a1
pyrus_communis pycom08g09420 pycom15g08610
rosa_chinensis RchiOBHm_Chr6g0306221
rosa_laevigata RLG00000010812
rosa_multiflora Rmu_sc0003594.1_g000002
rosa_roxburghii Rroxscaffold_7G00161920
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460700 Rh6BG440700 Rh6CG474700 Rh6DG461000
rosa_wichuraiana Rw6G040130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2481, 3036
AarI CACCTGC 1 cut(s) 2440
AasI GACNNNNNNGTC 2 cut(s) 572, 2893
Acc36I ACCTGC 2 cut(s) 850, 2440
AccB1I GGYRCC 1 cut(s) 182
AccB7I CCANNNNNTGG 2 cut(s) 23, 2546
AccII CGCG 2 cut(s) 365, 2629
AccIII TCCGGA 3 cut(s) 576, 2056, 2319
AclWI GGATC 4 cut(s) 532, 545, 2131, 2185
AcoI YGGCCR 4 cut(s) 205, 462, 1542, 1629
AcsI RAATTY 3 cut(s) 723, 2368, 2584
AcuI CTGAAG 3 cut(s) 61, 1200, 1628
AfaI GTAC 5 cut(s) 5, 1157, 1388, 1722, 2528
AflII CTTAAG 2 cut(s) 2500, 3023
AflIII ACRYGT 1 cut(s) 2881
AgeI ACCGGT 1 cut(s) 836
AjiI CACGTC 1 cut(s) 2882
AjnI CCWGG 4 cut(s) 454, 893, 1052, 2912
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AleI CACNNNNGTG 1 cut(s) 2287
AloI GAACNNNNNNTCC 2 cut(s) 1202, 1234
Alw21I GWGCWC 2 cut(s) 586, 2613
Alw26I GTCTC 6 cut(s) 75, 425, 743, 845, 914, 1267
Alw44I GTGCAC 1 cut(s) 2609
AlwI GGATC 4 cut(s) 532, 545, 2131, 2185
AlwNI CAGNNNCTG 1 cut(s) 1718
Ama87I CYCGRG 1 cut(s) 494
Aor13HI TCCGGA 3 cut(s) 576, 2056, 2319
ApaLI GTGCAC 1 cut(s) 2609
ApoI RAATTY 3 cut(s) 723, 2368, 2584
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AseI ATTAAT 1 cut(s) 2798
AsiGI ACCGGT 1 cut(s) 836
Asp700I GAANNNNTTC 1 cut(s) 2619
AspLEI GCGC 2 cut(s) 367, 798
AsuHPI GGTGA 9 cut(s) 62, 142, 238, 420, 536, 1106, 1577, 1876, 2208
AsuII TTCGAA 1 cut(s) 2623
AsuNHI GCTAGC 1 cut(s) 1174
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 7 cut(s) 114, 235, 468, 491, 637, 1147, 2916
BaeGI GKGCMC 2 cut(s) 185, 2613
BalI TGGCCA 1 cut(s) 1544
BamHI GGATCC 1 cut(s) 537
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 2 cut(s) 437, 586
BauI CACGAG 1 cut(s) 2700
BbsI GAAGAC 5 cut(s) 1055, 1962, 2078, 2397, 3035
Bbv12I GWGCWC 2 cut(s) 586, 2613
BceAI ACGGC 1 cut(s) 370
BcgI CGANNNNNNTGC 2 cut(s) 848, 882
BciT130I CCWGG 4 cut(s) 456, 895, 1054, 2914
BciVI GTATCC 1 cut(s) 2271
BcoDI GTCTC 6 cut(s) 75, 425, 743, 845, 914, 1267
BfaI CTAG 4 cut(s) 764, 974, 1175, 1922
BfmI CTRYAG 6 cut(s) 10, 368, 653, 1737, 2433, 2992
BfrI CTTAAG 2 cut(s) 2500, 3023
BfuAI ACCTGC 2 cut(s) 850, 2440
BfuI GTATCC 1 cut(s) 2271
BglII AGATCT 4 cut(s) 258, 1227, 1756, 2758
Bme18I GGWCC 7 cut(s) 114, 235, 468, 491, 637, 1147, 2916
BmeT110I CYCGRG 1 cut(s) 494
BmgBI CACGTC 1 cut(s) 2882
BmrI ACTGGG 2 cut(s) 104, 2417
BmsI GCATC 9 cut(s) 688, 757, 1068, 1183, 1517, 1627, 1705, 1815, 2050
BmtI GCTAGC 1 cut(s) 1178
BmuI ACTGGG 2 cut(s) 104, 2417
BoxI GACNNNNGTC 1 cut(s) 2502
BpiI GAAGAC 5 cut(s) 1055, 1962, 2078, 2397, 3035
BplI GAGNNNNNCTC 2 cut(s) 2224, 2256
BpmI CTGGAG 4 cut(s) 553, 1769, 2597, 2709
Bpu10I CCTNAGC 1 cut(s) 590
Bpu14I TTCGAA 1 cut(s) 2623
BpuEI CTTGAG 4 cut(s) 647, 749, 1252, 1480
BsaAI YACGTR 1 cut(s) 2098
BsaBI GATNNNNATC 3 cut(s) 536, 1917, 2122
BsaI GGTCTC 4 cut(s) 75, 425, 743, 914
BsaJI CCNNGG 9 cut(s) 455, 471, 477, 494, 1063, 1632, 2103, 2188, 2889
BsaWI WCCGGW 4 cut(s) 576, 836, 2056, 2319
Bse118I RCCGGY 3 cut(s) 734, 836, 2069
Bse1I ACTGG 7 cut(s) 99, 292, 648, 1135, 2219, 2412, 2679
Bse3DI GCAATG 2 cut(s) 168, 2048
Bse8I GATNNNNATC 3 cut(s) 536, 1917, 2122
BseAI TCCGGA 3 cut(s) 576, 2056, 2319
BseBI CCWGG 4 cut(s) 456, 895, 1054, 2914
BseDI CCNNGG 9 cut(s) 455, 471, 477, 494, 1063, 1632, 2103, 2188, 2889
BseJI GATNNNNATC 3 cut(s) 536, 1917, 2122
BseMI GCAATG 2 cut(s) 168, 2048
BseMII CTCAG 6 cut(s) 546, 1487, 2240, 2255, 2377, 2847
BseNI ACTGG 7 cut(s) 99, 292, 648, 1135, 2219, 2412, 2679
BseRI GAGGAG 4 cut(s) 189, 731, 1411, 2966
BseSI GKGCMC 2 cut(s) 185, 2613
BseX3I CGGCCG 2 cut(s) 462, 1629
BsgI GTGCAG 1 cut(s) 768
Bsh1236I CGCG 2 cut(s) 365, 2629
Bsh1285I CGRYCG 2 cut(s) 465, 1632
BshNI GGYRCC 1 cut(s) 182
BshTI ACCGGT 1 cut(s) 836
BsiEI CGRYCG 2 cut(s) 465, 1632
BsiHKAI GWGCWC 2 cut(s) 586, 2613
BsiHKCI CYCGRG 1 cut(s) 494
BslFI GGGAC 3 cut(s) 127, 477, 623
BsmAI GTCTC 6 cut(s) 75, 425, 743, 845, 914, 1267
BsmFI GGGAC 3 cut(s) 127, 477, 623
BsmI GAATGC 2 cut(s) 2015, 2705
Bso31I GGTCTC 4 cut(s) 75, 425, 743, 914
BsoBI CYCGRG 1 cut(s) 494
Bsp119I TTCGAA 1 cut(s) 2623
Bsp1286I GDGCHC 4 cut(s) 185, 437, 586, 2613
Bsp13I TCCGGA 3 cut(s) 576, 2056, 2319
Bsp1407I TGTACA 2 cut(s) 3, 1720
BspCNI CTCAG 6 cut(s) 547, 1486, 2239, 2254, 2376, 2848
BspEI TCCGGA 3 cut(s) 576, 2056, 2319
BspFNI CGCG 2 cut(s) 365, 2629
BspHI TCATGA 1 cut(s) 1288
BspMAI CTGCAG 3 cut(s) 372, 1741, 2437
BspMI ACCTGC 2 cut(s) 850, 2440
BspOI GCTAGC 1 cut(s) 1178
BspPI GGATC 4 cut(s) 532, 545, 2131, 2185
BspT104I TTCGAA 1 cut(s) 2623
BspT107I GGYRCC 1 cut(s) 182
BspTI CTTAAG 2 cut(s) 2500, 3023
BspTNI GGTCTC 4 cut(s) 75, 425, 743, 914
BsrDI GCAATG 2 cut(s) 168, 2048
BsrFI RCCGGY 3 cut(s) 734, 836, 2069
BsrGI TGTACA 2 cut(s) 3, 1720
BsrI ACTGG 7 cut(s) 99, 292, 648, 1135, 2219, 2412, 2679
BssAI RCCGGY 3 cut(s) 734, 836, 2069
BssECI CCNNGG 9 cut(s) 455, 471, 477, 494, 1063, 1632, 2103, 2188, 2889
BssSI CACGAG 1 cut(s) 2700
BssT1I CCWWGG 4 cut(s) 1063, 2103, 2188, 2889
Bst2BI CACGAG 1 cut(s) 2700
Bst2UI CCWGG 4 cut(s) 456, 895, 1054, 2914
Bst4CI ACNGT 9 cut(s) 14, 520, 1118, 1307, 1802, 2608, 2821, 2874, 3054
Bst6I CTCTTC 7 cut(s) 45, 80, 94, 443, 1265, 1604, 2225
BstAFI CTTAAG 2 cut(s) 2500, 3023
BstAPI GCANNNNNTGC 1 cut(s) 1664
BstAUI TGTACA 2 cut(s) 3, 1720
BstBAI YACGTR 1 cut(s) 2098
BstBI TTCGAA 1 cut(s) 2623
BstEII GGTNACC 1 cut(s) 939
BstENI CCTNNNNNAGG 2 cut(s) 1553, 2548
BstFNI CGCG 2 cut(s) 365, 2629
BstHHI GCGC 2 cut(s) 367, 798
BstMAI GTCTC 6 cut(s) 75, 425, 743, 845, 914, 1267
BstMCI CGRYCG 2 cut(s) 465, 1632
BstNI CCWGG 4 cut(s) 456, 895, 1054, 2914
BstNSI RCATGY 1 cut(s) 1662
BstPAI GACNNNNGTC 1 cut(s) 2502
BstPI GGTNACC 1 cut(s) 939
BstSFI CTRYAG 6 cut(s) 10, 368, 653, 1737, 2433, 2992
BstSLI GKGCMC 2 cut(s) 185, 2613
BstSNI TACGTA 1 cut(s) 2098
BstUI CGCG 2 cut(s) 365, 2629
BstV2I GAAGAC 5 cut(s) 1055, 1962, 2078, 2397, 3035
BstX2I RGATCY 6 cut(s) 258, 537, 1227, 1756, 2123, 2758
BstXI CCANNNNNNTGG 1 cut(s) 2195
BstYI RGATCY 6 cut(s) 258, 537, 1227, 1756, 2123, 2758
BstZI CGGCCG 2 cut(s) 462, 1629
BsuI GTATCC 1 cut(s) 2271
BtrI CACGTC 1 cut(s) 2882
BtsI GCAGTG 6 cut(s) 117, 387, 1461, 2306, 2478, 2954
BveI ACCTGC 2 cut(s) 850, 2440
CaiI CAGNNNCTG 1 cut(s) 1718
CciI TCATGA 1 cut(s) 1288
CfoI GCGC 2 cut(s) 367, 798
Cfr10I RCCGGY 3 cut(s) 734, 836, 2069
Cfr9I CCCGGG 1 cut(s) 494
CseI GACGC 3 cut(s) 879, 2567, 2643
CsiI ACCWGGT 1 cut(s) 1052
Csp6I GTAC 5 cut(s) 4, 1156, 1387, 1721, 2527
CspAI ACCGGT 1 cut(s) 836
CviAII CATG 8 cut(s) 702, 755, 1289, 1321, 1655, 1659, 2495, 2507
CviQI GTAC 5 cut(s) 4, 1156, 1387, 1721, 2527
DrdI GACNNNNNNGTC 2 cut(s) 572, 2893
DseDI GACNNNNNNGTC 2 cut(s) 572, 2893
EaeI YGGCCR 4 cut(s) 205, 462, 1542, 1629
EagI CGGCCG 2 cut(s) 462, 1629
Eam1104I CTCTTC 7 cut(s) 45, 80, 94, 443, 1265, 1604, 2225
EarI CTCTTC 7 cut(s) 45, 80, 94, 443, 1265, 1604, 2225
EciI GGCGGA 3 cut(s) 304, 1505, 2899
Ecl136II GAGCTC 1 cut(s) 584
EclXI CGGCCG 2 cut(s) 462, 1629
Eco105I TACGTA 1 cut(s) 2098
Eco130I CCWWGG 4 cut(s) 1063, 2103, 2188, 2889
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 2 cut(s) 437, 586
Eco31I GGTCTC 4 cut(s) 75, 425, 743, 914
Eco47I GGWCC 7 cut(s) 114, 235, 468, 491, 637, 1147, 2916
Eco52I CGGCCG 2 cut(s) 462, 1629
Eco53kI GAGCTC 1 cut(s) 584
Eco57I CTGAAG 3 cut(s) 61, 1200, 1628
Eco88I CYCGRG 1 cut(s) 494
Eco91I GGTNACC 1 cut(s) 939
EcoICRI GAGCTC 1 cut(s) 584
EcoNI CCTNNNNNAGG 2 cut(s) 1553, 2548
EcoO109I RGGNCCY 3 cut(s) 491, 825, 2693
EcoO65I GGTNACC 1 cut(s) 939
EcoRII CCWGG 4 cut(s) 454, 893, 1052, 2912
EcoT14I CCWWGG 4 cut(s) 1063, 2103, 2188, 2889
EcoT22I ATGCAT 3 cut(s) 703, 1660, 2043
EcoT38I GRGCYC 2 cut(s) 437, 586
ErhI CCWWGG 4 cut(s) 1063, 2103, 2188, 2889
FaeI CATG 8 cut(s) 705, 758, 1292, 1324, 1658, 1662, 2498, 2510
FaqI GGGAC 3 cut(s) 127, 477, 623
FatI CATG 8 cut(s) 701, 754, 1288, 1320, 1654, 1658, 2494, 2506
FauI CCCGC 1 cut(s) 370
FauNDI CATATG 1 cut(s) 2899
FriOI GRGCYC 2 cut(s) 437, 586
FspBI CTAG 4 cut(s) 764, 974, 1175, 1922
GlaI GCGC 2 cut(s) 366, 797
GsuI CTGGAG 4 cut(s) 553, 1769, 2597, 2709
HgaI GACGC 3 cut(s) 879, 2567, 2643
HhaI GCGC 2 cut(s) 367, 798
Hin1II CATG 8 cut(s) 705, 758, 1292, 1324, 1658, 1662, 2498, 2510
Hin6I GCGC 2 cut(s) 365, 796
HinP1I GCGC 2 cut(s) 365, 796
HincII GTYRAC 2 cut(s) 1024, 1707
HindII GTYRAC 2 cut(s) 1024, 1707
HphI GGTGA 9 cut(s) 62, 142, 238, 420, 536, 1106, 1577, 1876, 2208
Hpy166II GTNNAC 4 cut(s) 1024, 1707, 1951, 2611
Hpy8I GTNNAC 4 cut(s) 1024, 1707, 1951, 2611
Hpy99I CGWCG 2 cut(s) 269, 1001
HpyAV CCTTC 7 cut(s) 54, 403, 609, 1541, 1661, 2200, 2799
HpyCH4III ACNGT 9 cut(s) 14, 520, 1118, 1307, 1802, 2608, 2821, 2874, 3054
HpyCH4IV ACGT 5 cut(s) 1560, 2097, 2135, 2529, 2881
HpySE526I ACGT 5 cut(s) 1560, 2097, 2135, 2529, 2881
Hsp92II CATG 8 cut(s) 705, 758, 1292, 1324, 1658, 1662, 2498, 2510
HspAI GCGC 2 cut(s) 365, 796
KflI GGGWCCC 1 cut(s) 491
Kpn2I TCCGGA 3 cut(s) 576, 2056, 2319
LmnI GCTCC 6 cut(s) 440, 446, 1036, 1086, 1972, 2979
LweI GCATC 9 cut(s) 688, 757, 1068, 1183, 1517, 1627, 1705, 1815, 2050
MabI ACCWGGT 1 cut(s) 1052
MaeI CTAG 4 cut(s) 764, 974, 1175, 1922
MaeII ACGT 5 cut(s) 1560, 2097, 2135, 2529, 2881
MaeIII GTNAC 6 cut(s) 877, 939, 1307, 2098, 2168, 2884
MfeI CAATTG 2 cut(s) 1329, 1851
MflI RGATCY 6 cut(s) 258, 537, 1227, 1756, 2123, 2758
MhlI GDGCHC 4 cut(s) 185, 437, 586, 2613
MlsI TGGCCA 1 cut(s) 1544
MluNI TGGCCA 1 cut(s) 1544
MmeI TCCRAC 4 cut(s) 265, 592, 2310, 2479
Mox20I TGGCCA 1 cut(s) 1544
Mph1103I ATGCAT 3 cut(s) 703, 1660, 2043
MroI TCCGGA 3 cut(s) 576, 2056, 2319
MroXI GAANNNNTTC 1 cut(s) 2619
MscI TGGCCA 1 cut(s) 1544
MseI TTAA 8 cut(s) 807, 1044, 1578, 1677, 1878, 2501, 2798, 3024
MslI CAYNNNNRTG 2 cut(s) 753, 2287
Msp20I TGGCCA 1 cut(s) 1544
MspA1I CMGCKG 2 cut(s) 320, 2026
MspCI CTTAAG 2 cut(s) 2500, 3023
MunI CAATTG 2 cut(s) 1329, 1851
Mva1269I GAATGC 2 cut(s) 2015, 2705
MvaI CCWGG 4 cut(s) 456, 895, 1054, 2914
MvnI CGCG 2 cut(s) 365, 2629
NdeI CATATG 1 cut(s) 2899
NheI GCTAGC 1 cut(s) 1174
NlaIII CATG 8 cut(s) 705, 758, 1292, 1324, 1658, 1662, 2498, 2510
NmeAIII GCCGAG 3 cut(s) 183, 194, 2692
NmuCI GTSAC 1 cut(s) 2884
NsiI ATGCAT 3 cut(s) 703, 1660, 2043
NspI RCATGY 1 cut(s) 1662
NspV TTCGAA 1 cut(s) 2623
OliI CACNNNNGTG 1 cut(s) 2287
PaeI GCATGC 1 cut(s) 1662
PagI TCATGA 1 cut(s) 1288
PaqCI CACCTGC 1 cut(s) 2440
PceI AGGCCT 1 cut(s) 296
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 2878
PctI GAATGC 2 cut(s) 2015, 2705
PdmI GAANNNNTTC 1 cut(s) 2619
PfeI GAWTC 9 cut(s) 949, 1072, 1211, 1781, 1918, 1992, 2316, 2667, 2720
PflFI GACNNNGTC 1 cut(s) 1054
PflMI CCANNNNNTGG 2 cut(s) 23, 2546
PinAI ACCGGT 1 cut(s) 836
Ppu21I YACGTR 1 cut(s) 2098
PpuMI RGGWCCY 1 cut(s) 491
PshAI GACNNNNGTC 1 cut(s) 2502
PshBI ATTAAT 1 cut(s) 2798
PsiI TTATAA 2 cut(s) 2481, 3036
Psp124BI GAGCTC 1 cut(s) 586
Psp5II RGGWCCY 1 cut(s) 491
Psp6I CCWGG 4 cut(s) 454, 893, 1052, 2912
PspEI GGTNACC 1 cut(s) 939
PspGI CCWGG 4 cut(s) 454, 893, 1052, 2912
PspPPI RGGWCCY 1 cut(s) 491
PstI CTGCAG 3 cut(s) 372, 1741, 2437
PstNI CAGNNNCTG 1 cut(s) 1718
PsuI RGATCY 6 cut(s) 258, 537, 1227, 1756, 2123, 2758
PsyI GACNNNGTC 1 cut(s) 1054
PvuII CAGCTG 1 cut(s) 2026
RsaI GTAC 5 cut(s) 5, 1157, 1388, 1722, 2528
RsaNI GTAC 5 cut(s) 4, 1156, 1387, 1721, 2527
RseI CAYNNNNRTG 2 cut(s) 753, 2287
SacI GAGCTC 1 cut(s) 586
SaqAI TTAA 8 cut(s) 807, 1044, 1578, 1677, 1878, 2501, 2798, 3024
SduI GDGCHC 4 cut(s) 185, 437, 586, 2613
SexAI ACCWGGT 1 cut(s) 1052
SfaNI GCATC 9 cut(s) 688, 757, 1068, 1183, 1517, 1627, 1705, 1815, 2050
SfcI CTRYAG 6 cut(s) 10, 368, 653, 1737, 2433, 2992
SfuI TTCGAA 1 cut(s) 2623
SinI GGWCC 7 cut(s) 114, 235, 468, 491, 637, 1147, 2916
SmaI CCCGGG 1 cut(s) 496
SmiMI CAYNNNNRTG 2 cut(s) 753, 2287
SmlI CTYRAG 6 cut(s) 662, 728, 1231, 1495, 2500, 3023
SmoI CTYRAG 6 cut(s) 662, 728, 1231, 1495, 2500, 3023
SnaBI TACGTA 1 cut(s) 2098
SphI GCATGC 1 cut(s) 1662
SseBI AGGCCT 1 cut(s) 296
SspI AATATT 1 cut(s) 1254
SspMI CTAG 4 cut(s) 764, 974, 1175, 1922
SstI GAGCTC 1 cut(s) 586
StuI AGGCCT 1 cut(s) 296
StyI CCWWGG 4 cut(s) 1063, 2103, 2188, 2889
TaaI ACNGT 9 cut(s) 14, 520, 1118, 1307, 1802, 2608, 2821, 2874, 3054
TaiI ACGT 5 cut(s) 1563, 2100, 2138, 2532, 2884
TaqI TCGA 5 cut(s) 773, 1238, 1379, 2399, 2623
TatI WGTACW 2 cut(s) 3, 1720
TauI GCSGC 5 cut(s) 125, 272, 279, 320, 1631
TfiI GAWTC 9 cut(s) 949, 1072, 1211, 1781, 1918, 1992, 2316, 2667, 2720
Tru1I TTAA 8 cut(s) 807, 1044, 1578, 1677, 1878, 2501, 2798, 3024
Tru9I TTAA 8 cut(s) 807, 1044, 1578, 1677, 1878, 2501, 2798, 3024
TseFI GTSAC 1 cut(s) 2884
Tsp45I GTSAC 1 cut(s) 2884
TspDTI ATGAA 9 cut(s) 20, 419, 1085, 1422, 1643, 1675, 2016, 2400, 3018
TspGWI ACGGA 3 cut(s) 1774, 1974, 2362
TspMI CCCGGG 1 cut(s) 494
Tth111I GACNNNGTC 1 cut(s) 1054
Van91I CCANNNNNTGG 2 cut(s) 23, 2546
Vha464I CTTAAG 2 cut(s) 2500, 3023
VneI GTGCAC 1 cut(s) 2609
VpaK11BI GGWCC 7 cut(s) 114, 235, 468, 491, 637, 1147, 2916
VspI ATTAAT 1 cut(s) 2798
XagI CCTNNNNNAGG 2 cut(s) 1553, 2548
XapI RAATTY 3 cut(s) 723, 2368, 2584
XbaI TCTAGA 2 cut(s) 973, 1921
XceI RCATGY 1 cut(s) 1662
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmaI CCCGGG 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 2619
XspI CTAG 4 cut(s) 764, 974, 1175, 1922
Zsp2I ATGCAT 3 cut(s) 703, 1660, 2043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.