MD15G1093300.v1.1

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013421
Physical Location & Seq
Reverse (-)
6459241 .. 6463851
4611 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1093300.v1.1.491

Sequence Viewer

Length: 3006 bp
ATGGCTCACCTCTTCAGAGACCTCTCTTCGCTTGGCCAATCCAAGAGAGGCATCACCGCCCCCACAACCACCAGAGCCACCGCCTCACCCGCCAAACCACTCAGCATACCCACCAGATCCATTTCCGCAATGGGCACCGATCTCCCATCCCCGCTCGGCCAGCTCTCGACCCAACTCAGCGACTCGGACCTCCGACTCACCGCCTACGAGATCTTCGTCGCCGCCTGCCGCACATCCACCGGAAAGGCCTTGACTTTCACACCCTCCTCCGCTGACTCGCCGACCCAACACGCCAACTCCCCCAACGACTCCCCCGCGCTGCAGAGATCGCTCACTTCCACAGCTGCCAGCAAGATGAAGAAAGCATTGGGTCTCAAATCGCCGGGCTCCGGCTCCAAGAAGAGTCCTGGGTCGGCCGGGTCCGGGGCCGGGTCGGGTCCCGGAAAGCCTAGGCGGGCAATGACGGTGGGTGAGCTGATGAGGATCCAAATGGGGATTTCTGAGGCCACTGACTCCAGAGTCCGGAGAGCTCTGCTCAGGATTTCTGCTTCTCAGGTCGGAAGGCGAATTGAGTCGGTGGTAGTGCCACTGGAGCTGTTACAGCAGCTCAAGTCCTCTGATTTCACTGACCAGCAAGAATACGATGCATGGCAGAAAAGAACCCTCAAAATTCTTGAGGCCGGTCTCCTCTTGCATCCCCACGTGCCACTAGACAAGTCGAATAATGCTGCACAGAGATTGCGTCAAATTATTAATGGGGCATTGGACAGGCCCTTTGAAACTGGCAGAAATAACGAGACTCTGCAGGTTCTTCGTAATGCTGTTACGGCTCTTGCTTCTAGGTCATCTGATGGTCTCTATGATACATCACATTGGGCAGATGGGTTACCATTGAATCTCCGGCTTTATGAGAGGCTTCTAGAAGCCTGCTTTGATCTTCACGACGAAACATCTATAATAGAGGAAGTTGACGAGCTAATGGAGCATATTAAGAAGACCTGGTCAATCCTTGGAATGAACCAGATGCTCCATAACCTTTGCTTTACTTGGGTTTTATTTCATCGTTTTGTTGCAACTGGTCAAGTAGAACTGGACCTCTTGTATGCTGCTGATAGTCAGCTAGCTGAGGTTGCTAAAGATGCAAAGGCAACAAAGGATTCCGAGTACTGCAAGATCTTGAGTTCAACATTGACTTCAATATTGGGATGGGCAGAGAAGAGACTCCTTGCATATCATGACACTTTTGATAGCAGTAACATTGACACTATGCAGGCCATTGTTTCTCTGGGGGTAGTAGCAGCTAAGATTTTAGTTGAAGATATATCAAATGAGTACCGCAGGAGGAGGAAAAATGAAGTTGATGTTGCCCGTAGCAGGATTGACACCTACATCAGATCATCCTTGCGCACTGCTTTTGCTCAGAGAATGGAAAAGGCAGATTCAAGCAGGAGAGCATCAAGACACCAGCCAAATCCCCTTCCTGTTCTGGCCATCCTTGCAAAGGACGTTGGTGAGCTGGCAGTTAAGGAGAAAGAGGTGTTCAGTCCAATATTGAAGAGATGGCATCCTTTTGCTGCCGGGGTGGCTGTGGCAACCCTTCACGCTTGCTATGCGAATGAGATTAAACAATTCATATCCGGTATAGCGGAGTTGACACCAGATGCTGTACAAGTTTTGAGAGCCGCAGATAAGCTGGAGAAAGATCTTGTGCTTATAGCAGTTCTAGACTCTGTAGATAGTGATGACGGTGGCAAGGCAATAATTCGTGAGATGCCTCCTTACGAGGCTGAAACTGCAATTGCGAATCTGGTGAAAGTGTGGATTAAGACAAGAGTGGACAGATTGAAAGAATGGATTGATAGGAATCTACAACAAGAGGTATGGAACCCACAAGCAAACGAAGATGGATATGCCCCATCTGCCGTTGAAGTTTTGCGAATCCTTGATGAAACTCTGGAAGCATTCTTTCAGCTGCCAATACCTATGCATCCTGCATTGCTTCCTGACTTGATGACTGGCCTTGATAGATGTCTTCAGTATTACGTAACCAAGGCAAAATCTGGATGTGGATCTCGCAATACGTTTGTTCCCACTATGCCGGCATTGACCAGATGTACCATAGGATCAAAATTCCAAGGCTTTGGCAAAAAGAAAGAAAAATCGCCAGTTCCTCAAAAGAGGAACTCTCAGGTTGCAACACTCAATAATGGGGATAACTCCTTTGGGATACCTCAGATGTGTGCTCGTATAAATACGTTGCAAAGAATCCGGAGTGAGTTGGAGGTTCTGGAGAAACGGATTATTACTCATCTCAGAAATTCAGAATCTGCTAATGTAGAAGACTTCTCAAATGGACTGGGGAAAAAGTTTGAACTCACGCCAGCAGCTTGTGTGGAAGCAATCCAACAGCTTTGTGAGGCAGTGGCTTATAAAATGATCTTCCATGACCTAAGTCATGTTCTGTGGGATGGTTTGTATGTTGGGGAACCGTCCTCTTGTAGAATAGACGCTTTTCTTGACGGGCTGGAGAAGAACTTACTCATAATATCCAATACTGTGCATGAAAGAGTTCGTACACGGATTATAACTGACATAATGAGAGCGTCATTTGATGGATTCTTGCTGGTTTTGCTTGCTGGAGGCCCCTCTCGTGCATTCTCCCAGCAGGATTCCCAAATAATAGAGGACGATTTCAAAGCCCTCAAGGATCTATTCTGGGCCAATGGGGATGGCTTGCCTTCTGAATTGATAGACAAGTTTTCAACAACGGTGAGAAGTGTGCTTCCCCTTTTCAGAACAGACACTGATAGCCTCGTCGAACGGTTTAGACGGGTGACCTTGGAGTCATATGGCTCGTCCGCCAGGTCCAGACTCCCGTTGCCGCCAACATCTGGGCAGTGGAACCCAACTGAACCAAACACGCTCCTTCGCGTGTTGTGCTACAGGAATGATGAATCAGCTACCAAGTTTTTGAAGAAGACCTATAATCTGCCCAAGAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

1002

Amino Acids

111.0

Weight (kDa)

8.71

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 600 - 1000 2.6e-175 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25800
fragaria_vesca FvH4_2g35590 FvH4_2g35590
malus_domestica MD08G1113600.v1.1 MD15G1093300.v1.1
prunus_persica Prupe.1G448100_v2.0.a1
pyrus_communis pycom08g09420 pycom15g08610
rosa_chinensis RchiOBHm_Chr6g0306221
rosa_laevigata RLG00000010812
rosa_multiflora Rmu_sc0003594.1_g000002
rosa_roxburghii Rroxscaffold_7G00161920
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460700 Rh6BG440700 Rh6CG474700 Rh6DG461000
rosa_wichuraiana Rw6G040130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2430, 2585
AasI GACNNNNNNGTC 2 cut(s) 518, 2842
Acc16I TGCGCA 1 cut(s) 1406
Acc36I ACCTGC 1 cut(s) 796
AccB1I GGYRCC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 2891
AccBSI CCGCTC 1 cut(s) 154
AccII CGCG 2 cut(s) 317, 2931
AccIII TCCGGA 2 cut(s) 522, 2268
AclWI GGATC 6 cut(s) 111, 478, 491, 2077, 2131, 2715
AcoI YGGCCR 4 cut(s) 34, 157, 414, 1488
AcsI RAATTY 3 cut(s) 669, 2129, 2317
AcuI CTGAAG 1 cut(s) 2018
AcvI CACGTG 1 cut(s) 703
AfaI GTAC 5 cut(s) 1166, 1334, 1668, 2116, 2575
AfiI CCNNNNNNNGG 7 cut(s) 389, 423, 429, 522, 1374, 1501, 2891
AjnI CCWGG 3 cut(s) 406, 998, 2861
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
Alw21I GWGCWC 2 cut(s) 532, 2245
Alw26I GTCTC 6 cut(s) 12, 377, 689, 791, 860, 1213
AlwI GGATC 6 cut(s) 111, 478, 491, 2077, 2131, 2715
AlwNI CAGNNNCTG 3 cut(s) 1664, 2327, 2804
Aor13HI TCCGGA 2 cut(s) 522, 2268
ApeKI GCWGC 9 cut(s) 319, 344, 604, 728, 1106, 1298, 1574, 1972, 2384
ApoI RAATTY 3 cut(s) 669, 2129, 2317
ArsI GACNNNNNNTTYG 2 cut(s) 758, 790
AseI ATTAAT 1 cut(s) 753
Asp700I GAANNNNTTC 1 cut(s) 2568
AspA2I CCTAGG 1 cut(s) 449
AspLEI GCGC 2 cut(s) 319, 1407
AspS9I GGNCC 9 cut(s) 187, 420, 426, 437, 771, 1093, 2642, 2718, 2865
AsuC2I CCSGG 6 cut(s) 384, 418, 424, 430, 441, 1579
AsuHPI GGTGA 8 cut(s) 46, 78, 190, 482, 1523, 1822, 2782, 2845
AsuNHI GCTAGC 1 cut(s) 1120
AvaII GGWCC 5 cut(s) 187, 420, 437, 1093, 2865
AvrII CCTAGG 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 137
BalI TGGCCA 2 cut(s) 36, 1490
BamHI GGATCC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 134
BanII GRGCYC 2 cut(s) 389, 532
BauI CACGAG 1 cut(s) 2649
BbrPI CACGTG 1 cut(s) 703
BbsI GAAGAC 4 cut(s) 1001, 2024, 2346, 2984
Bbv12I GWGCWC 2 cut(s) 532, 2245
BbvCI CCTCAGC 1 cut(s) 1125
BbvI GCAGC 9 cut(s) 306, 331, 616, 715, 1093, 1310, 1561, 1959, 2396
BceAI ACGGC 2 cut(s) 843, 1907
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BciT130I CCWGG 3 cut(s) 408, 1000, 2863
BciVI GTATCC 1 cut(s) 2220
BcnI CCSGG 6 cut(s) 384, 418, 424, 430, 441, 1579
BcoDI GTCTC 6 cut(s) 12, 377, 689, 791, 860, 1213
BfaI CTAG 6 cut(s) 450, 710, 840, 920, 1121, 1724
BfmI CTRYAG 4 cut(s) 320, 803, 1731, 2941
BfuAI ACCTGC 1 cut(s) 796
BfuI GTATCC 1 cut(s) 2220
BglI GCCNNNNNGGC 1 cut(s) 1583
BglII AGATCT 3 cut(s) 210, 1173, 1702
BlnI CCTAGG 1 cut(s) 449
BmcAI AGTACT 1 cut(s) 1166
Bme1390I CCNGG 9 cut(s) 384, 408, 418, 424, 430, 441, 1000, 1579, 2863
Bme18I GGWCC 5 cut(s) 187, 420, 437, 1093, 2865
BmgT120I GGNCC 9 cut(s) 187, 420, 426, 437, 771, 1093, 2642, 2718, 2865
BmrFI CCNGG 9 cut(s) 384, 408, 418, 424, 430, 441, 1000, 1579, 2863
BmrI ACTGGG 1 cut(s) 2366
BmtI GCTAGC 1 cut(s) 1124
BmuI ACTGGG 1 cut(s) 2366
BoxI GACNNNNGTC 1 cut(s) 2451
BpiI GAAGAC 4 cut(s) 1001, 2024, 2346, 2984
BplI GAGNNNNNCTC 4 cut(s) 519, 551, 2170, 2202
BpmI CTGGAG 6 cut(s) 499, 611, 1715, 2309, 2546, 2658
Bpu10I CCTNAGC 2 cut(s) 536, 1125
BpuEI CTTGAG 4 cut(s) 593, 695, 1198, 2687
BpuMI CCSGG 6 cut(s) 384, 418, 424, 430, 441, 1579
BsaAI YACGTR 2 cut(s) 703, 2044
BsaBI GATNNNNATC 3 cut(s) 482, 1863, 2068
BsaI GGTCTC 4 cut(s) 12, 377, 689, 860
BsaJI CCNNGG 8 cut(s) 407, 423, 449, 1009, 1578, 2049, 2134, 2838
BsaWI WCCGGW 4 cut(s) 239, 522, 1637, 2268
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 7 cut(s) 389, 423, 429, 522, 1374, 1501, 2891
Bse118I RCCGGY 2 cut(s) 680, 2098
Bse1I ACTGG 7 cut(s) 594, 787, 1081, 1095, 2020, 2165, 2361
Bse3DI GCAATG 3 cut(s) 135, 465, 1994
Bse8I GATNNNNATC 3 cut(s) 482, 1863, 2068
BseAI TCCGGA 2 cut(s) 522, 2268
BseBI CCWGG 3 cut(s) 408, 1000, 2863
BseDI CCNNGG 8 cut(s) 407, 423, 449, 1009, 1578, 2049, 2134, 2838
BseJI GATNNNNATC 3 cut(s) 482, 1863, 2068
BseLI CCNNNNNNNGG 7 cut(s) 389, 423, 429, 522, 1374, 1501, 2891
BseMI GCAATG 3 cut(s) 135, 465, 1994
BseNI ACTGG 7 cut(s) 594, 787, 1081, 1095, 2020, 2165, 2361
BseRI GAGGAG 3 cut(s) 256, 677, 1357
BseSI GKGCMC 1 cut(s) 137
BseX3I CGGCCG 1 cut(s) 414
BseXI GCAGC 9 cut(s) 306, 331, 616, 715, 1093, 1310, 1561, 1959, 2396
BseYI CCCAGC 1 cut(s) 2661
BsgI GTGCAG 1 cut(s) 714
Bsh1236I CGCG 2 cut(s) 317, 2931
Bsh1285I CGRYCG 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 417
BsiHKAI GWGCWC 2 cut(s) 532, 2245
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 7 cut(s) 389, 423, 429, 522, 1374, 1501, 2891
BsmAI GTCTC 6 cut(s) 12, 377, 689, 791, 860, 1213
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 2 cut(s) 1961, 2654
Bso31I GGTCTC 4 cut(s) 12, 377, 689, 860
Bsp1286I GDGCHC 4 cut(s) 137, 389, 532, 2245
Bsp13I TCCGGA 2 cut(s) 522, 2268
Bsp1407I TGTACA 1 cut(s) 1666
BspEI TCCGGA 2 cut(s) 522, 2268
BspFNI CGCG 2 cut(s) 317, 2931
BspHI TCATGA 1 cut(s) 1234
BspMAI CTGCAG 2 cut(s) 324, 807
BspMI ACCTGC 1 cut(s) 796
BspOI GCTAGC 1 cut(s) 1124
BspPI GGATC 6 cut(s) 111, 478, 491, 2077, 2131, 2715
BspT107I GGYRCC 1 cut(s) 134
BspTNI GGTCTC 4 cut(s) 12, 377, 689, 860
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 3 cut(s) 135, 465, 1994
BsrFI RCCGGY 2 cut(s) 680, 2098
BsrGI TGTACA 1 cut(s) 1666
BsrI ACTGG 7 cut(s) 594, 787, 1081, 1095, 2020, 2165, 2361
BssAI RCCGGY 2 cut(s) 680, 2098
BssECI CCNNGG 8 cut(s) 407, 423, 449, 1009, 1578, 2049, 2134, 2838
BssSI CACGAG 1 cut(s) 2649
BssT1I CCWWGG 5 cut(s) 449, 1009, 2049, 2134, 2838
Bst2BI CACGAG 1 cut(s) 2649
Bst2UI CCWGG 3 cut(s) 408, 1000, 2863
Bst4CI ACNGT 7 cut(s) 466, 1748, 2490, 2557, 2770, 2823, 3003
Bst6I CTCTTC 5 cut(s) 17, 31, 395, 1211, 1550
BstAUI TGTACA 1 cut(s) 1666
BstBAI YACGTR 2 cut(s) 703, 2044
BstEII GGTNACC 2 cut(s) 885, 2833
BstENI CCTNNNNNAGG 1 cut(s) 1499
BstFNI CGCG 2 cut(s) 317, 2931
BstHHI GCGC 2 cut(s) 319, 1407
BstMAI GTCTC 6 cut(s) 12, 377, 689, 791, 860, 1213
BstMCI CGRYCG 1 cut(s) 417
BstNI CCWGG 3 cut(s) 408, 1000, 2863
BstPAI GACNNNNGTC 1 cut(s) 2451
BstPI GGTNACC 2 cut(s) 885, 2833
BstSCI CCNGG 9 cut(s) 382, 406, 416, 422, 428, 439, 998, 1577, 2861
BstSFI CTRYAG 4 cut(s) 320, 803, 1731, 2941
BstSLI GKGCMC 1 cut(s) 137
BstSNI TACGTA 1 cut(s) 2044
BstUI CGCG 2 cut(s) 317, 2931
BstV1I GCAGC 9 cut(s) 306, 331, 616, 715, 1093, 1310, 1561, 1959, 2396
BstV2I GAAGAC 4 cut(s) 1001, 2024, 2346, 2984
BstX2I RGATCY 7 cut(s) 116, 210, 483, 1173, 1702, 2069, 2707
BstXI CCANNNNNNTGG 1 cut(s) 2141
BstYI RGATCY 7 cut(s) 116, 210, 483, 1173, 1702, 2069, 2707
BstZI CGGCCG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 2220
BtsI GCAGTG 3 cut(s) 1407, 2427, 2903
BtsIMutI CAGTG 7 cut(s) 507, 587, 624, 1407, 2427, 2802, 2903
BveI ACCTGC 1 cut(s) 796
CaiI CAGNNNCTG 3 cut(s) 1664, 2327, 2804
CciI TCATGA 1 cut(s) 1234
CfoI GCGC 2 cut(s) 319, 1407
Cfr10I RCCGGY 2 cut(s) 680, 2098
Cfr13I GGNCC 9 cut(s) 187, 420, 426, 437, 771, 1093, 2642, 2718, 2865
CseI GACGC 3 cut(s) 731, 2516, 2592
CsiI ACCWGGT 1 cut(s) 998
Csp6I GTAC 5 cut(s) 1165, 1333, 1667, 2115, 2574
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 5 cut(s) 648, 1235, 2444, 2456, 2561
CviQI GTAC 5 cut(s) 1165, 1333, 1667, 2115, 2574
DrdI GACNNNNNNGTC 2 cut(s) 518, 2842
DseDI GACNNNNNNGTC 2 cut(s) 518, 2842
EaeI YGGCCR 4 cut(s) 34, 157, 414, 1488
EagI CGGCCG 1 cut(s) 414
Eam1104I CTCTTC 5 cut(s) 17, 31, 395, 1211, 1550
EarI CTCTTC 5 cut(s) 17, 31, 395, 1211, 1550
EciI GGCGGA 1 cut(s) 2848
Ecl136II GAGCTC 1 cut(s) 530
EclXI CGGCCG 1 cut(s) 414
Eco105I TACGTA 1 cut(s) 2044
Eco130I CCWWGG 5 cut(s) 449, 1009, 2049, 2134, 2838
Eco147I AGGCCT 1 cut(s) 248
Eco24I GRGCYC 2 cut(s) 389, 532
Eco31I GGTCTC 4 cut(s) 12, 377, 689, 860
Eco47I GGWCC 5 cut(s) 187, 420, 437, 1093, 2865
Eco52I CGGCCG 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 2018
Eco72I CACGTG 1 cut(s) 703
Eco91I GGTNACC 2 cut(s) 885, 2833
EcoICRI GAGCTC 1 cut(s) 530
EcoNI CCTNNNNNAGG 1 cut(s) 1499
EcoO109I RGGNCCY 3 cut(s) 437, 771, 2642
EcoO65I GGTNACC 2 cut(s) 885, 2833
EcoRII CCWGG 3 cut(s) 406, 998, 2861
EcoT14I CCWWGG 5 cut(s) 449, 1009, 2049, 2134, 2838
EcoT22I ATGCAT 2 cut(s) 649, 1989
EcoT38I GRGCYC 2 cut(s) 389, 532
ErhI CCWWGG 5 cut(s) 449, 1009, 2049, 2134, 2838
FaeI CATG 5 cut(s) 651, 1238, 2447, 2459, 2564
FaqI GGGAC 1 cut(s) 423
FatI CATG 5 cut(s) 647, 1234, 2443, 2455, 2560
FauI CCCGC 4 cut(s) 97, 159, 322, 447
FauNDI CATATG 1 cut(s) 2848
FriOI GRGCYC 2 cut(s) 389, 532
FspBI CTAG 6 cut(s) 450, 710, 840, 920, 1121, 1724
FspI TGCGCA 1 cut(s) 1406
GlaI GCGC 2 cut(s) 318, 1406
GsaI CCCAGC 1 cut(s) 2665
GsuI CTGGAG 6 cut(s) 499, 611, 1715, 2309, 2546, 2658
HgaI GACGC 3 cut(s) 731, 2516, 2592
HhaI GCGC 2 cut(s) 319, 1407
Hin1II CATG 5 cut(s) 651, 1238, 2447, 2459, 2564
Hin6I GCGC 2 cut(s) 317, 1405
HinP1I GCGC 2 cut(s) 317, 1405
HincII GTYRAC 2 cut(s) 970, 1653
HindII GTYRAC 2 cut(s) 970, 1653
HphI GGTGA 8 cut(s) 46, 78, 190, 482, 1523, 1822, 2782, 2845
Hpy166II GTNNAC 4 cut(s) 970, 1653, 1837, 2576
Hpy8I GTNNAC 4 cut(s) 970, 1653, 1837, 2576
Hpy99I CGWCG 3 cut(s) 221, 947, 2819
HpyAV CCTTC 5 cut(s) 555, 1487, 1607, 2748, 2936
HpyCH4III ACNGT 7 cut(s) 466, 1748, 2490, 2557, 2770, 2823, 3003
HpyCH4IV ACGT 5 cut(s) 702, 1506, 2043, 2081, 2255
HpySE526I ACGT 5 cut(s) 702, 1506, 2043, 2081, 2255
Hsp92II CATG 5 cut(s) 651, 1238, 2447, 2459, 2564
HspAI GCGC 2 cut(s) 317, 1405
KflI GGGWCCC 1 cut(s) 437
Kpn2I TCCGGA 2 cut(s) 522, 2268
KroI GCCGGC 1 cut(s) 2098
KroNI GCCGGC 1 cut(s) 2100
LmnI GCTCC 6 cut(s) 392, 398, 592, 982, 1032, 2928
Lsp1109I GCAGC 9 cut(s) 306, 331, 616, 715, 1093, 1310, 1561, 1959, 2396
MabI ACCWGGT 1 cut(s) 998
MaeI CTAG 6 cut(s) 450, 710, 840, 920, 1121, 1724
MaeII ACGT 5 cut(s) 702, 1506, 2043, 2081, 2255
MaeIII GTNAC 6 cut(s) 597, 823, 885, 1253, 2044, 2833
MbiI CCGCTC 1 cut(s) 154
MfeI CAATTG 1 cut(s) 1797
MflI RGATCY 7 cut(s) 116, 210, 483, 1173, 1702, 2069, 2707
MhlI GDGCHC 4 cut(s) 137, 389, 532, 2245
MlsI TGGCCA 2 cut(s) 36, 1490
MluCI AATT 9 cut(s) 567, 669, 747, 1628, 1761, 1797, 2129, 2317, 2744
MluNI TGGCCA 2 cut(s) 36, 1490
MmeI TCCRAC 4 cut(s) 217, 538, 2259, 2428
Mox20I TGGCCA 2 cut(s) 36, 1490
Mph1103I ATGCAT 2 cut(s) 649, 1989
MroI TCCGGA 2 cut(s) 522, 2268
MroNI GCCGGC 1 cut(s) 2098
MroXI GAANNNNTTC 1 cut(s) 2568
MscI TGGCCA 2 cut(s) 36, 1490
MseI TTAA 5 cut(s) 753, 990, 1524, 1623, 1824
Msp20I TGGCCA 2 cut(s) 36, 1490
MspA1I CMGCKG 3 cut(s) 272, 344, 1972
MspR9I CCNGG 9 cut(s) 384, 408, 418, 424, 430, 441, 1000, 1579, 2863
MunI CAATTG 1 cut(s) 1797
Mva1269I GAATGC 2 cut(s) 1961, 2654
MvaI CCWGG 3 cut(s) 408, 1000, 2863
MvnI CGCG 2 cut(s) 317, 2931
NaeI GCCGGC 1 cut(s) 2100
NciI CCSGG 6 cut(s) 384, 418, 424, 430, 441, 1579
NdeI CATATG 1 cut(s) 2848
NgoMIV GCCGGC 1 cut(s) 2098
NheI GCTAGC 1 cut(s) 1120
NlaIII CATG 5 cut(s) 651, 1238, 2447, 2459, 2564
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 2833
NsbI TGCGCA 1 cut(s) 1406
NsiI ATGCAT 2 cut(s) 649, 1989
PagI TCATGA 1 cut(s) 1234
PceI AGGCCT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 2 cut(s) 1961, 2654
PdiI GCCGGC 1 cut(s) 2100
PdmI GAANNNNTTC 1 cut(s) 2568
PflFI GACNNNGTC 1 cut(s) 1000
PflMI CCANNNNNTGG 1 cut(s) 2891
PfoI TCCNGGA 1 cut(s) 439
PmaCI CACGTG 1 cut(s) 703
PmlI CACGTG 1 cut(s) 703
Ppu21I YACGTR 2 cut(s) 703, 2044
PpuMI RGGWCCY 1 cut(s) 437
PshAI GACNNNNGTC 1 cut(s) 2451
PshBI ATTAAT 1 cut(s) 753
PsiI TTATAA 2 cut(s) 2430, 2585
Psp124BI GAGCTC 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 3 cut(s) 406, 998, 2861
PspCI CACGTG 1 cut(s) 703
PspEI GGTNACC 2 cut(s) 885, 2833
PspFI CCCAGC 1 cut(s) 2661
PspGI CCWGG 3 cut(s) 406, 998, 2861
PspPI GGNCC 9 cut(s) 187, 420, 426, 437, 771, 1093, 2642, 2718, 2865
PspPPI RGGWCCY 1 cut(s) 437
PstI CTGCAG 2 cut(s) 324, 807
PstNI CAGNNNCTG 3 cut(s) 1664, 2327, 2804
PsuI RGATCY 7 cut(s) 116, 210, 483, 1173, 1702, 2069, 2707
PsyI GACNNNGTC 1 cut(s) 1000
PvuII CAGCTG 2 cut(s) 344, 1972
RsaI GTAC 5 cut(s) 1166, 1334, 1668, 2116, 2575
RsaNI GTAC 5 cut(s) 1165, 1333, 1667, 2115, 2574
SacI GAGCTC 1 cut(s) 532
SaqAI TTAA 5 cut(s) 753, 990, 1524, 1623, 1824
Sau96I GGNCC 9 cut(s) 187, 420, 426, 437, 771, 1093, 2642, 2718, 2865
ScaI AGTACT 1 cut(s) 1166
ScrFI CCNGG 9 cut(s) 384, 408, 418, 424, 430, 441, 1000, 1579, 2863
SduI GDGCHC 4 cut(s) 137, 389, 532, 2245
SexAI ACCWGGT 1 cut(s) 998
SfcI CTRYAG 4 cut(s) 320, 803, 1731, 2941
SinI GGWCC 5 cut(s) 187, 420, 437, 1093, 2865
SmlI CTYRAG 4 cut(s) 608, 674, 1177, 2702
SmoI CTYRAG 4 cut(s) 608, 674, 1177, 2702
SnaBI TACGTA 1 cut(s) 2044
Sse9I AATT 9 cut(s) 567, 669, 747, 1628, 1761, 1797, 2129, 2317, 2744
SseBI AGGCCT 1 cut(s) 248
SspI AATATT 2 cut(s) 1200, 1551
SspMI CTAG 6 cut(s) 450, 710, 840, 920, 1121, 1724
SstI GAGCTC 1 cut(s) 532
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 9 cut(s) 382, 406, 416, 422, 428, 439, 998, 1577, 2861
StyI CCWWGG 5 cut(s) 449, 1009, 2049, 2134, 2838
TaaI ACNGT 7 cut(s) 466, 1748, 2490, 2557, 2770, 2823, 3003
TaiI ACGT 5 cut(s) 705, 1509, 2046, 2084, 2258
TaqI TCGA 3 cut(s) 167, 719, 2817
TasI AATT 9 cut(s) 567, 669, 747, 1628, 1761, 1797, 2129, 2317, 2744
TatI WGTACW 2 cut(s) 1164, 1666
TauI GCSGC 4 cut(s) 224, 231, 1685, 2884
Tru1I TTAA 5 cut(s) 753, 990, 1524, 1623, 1824
Tru9I TTAA 5 cut(s) 753, 990, 1524, 1623, 1824
TscAI CASTG 7 cut(s) 514, 594, 631, 1414, 2427, 2809, 2903
TseFI GTSAC 1 cut(s) 2833
TseI GCWGC 9 cut(s) 319, 344, 604, 728, 1106, 1298, 1574, 1972, 2384
Tsp45I GTSAC 1 cut(s) 2833
TspDTI ATGAA 8 cut(s) 371, 1031, 1049, 1368, 1621, 1962, 2577, 2967
TspGWI ACGGA 2 cut(s) 2311, 2593
TspRI CASTG 7 cut(s) 514, 594, 631, 1414, 2427, 2809, 2903
Tth111I GACNNNGTC 1 cut(s) 1000
Van91I CCANNNNNTGG 1 cut(s) 2891
VpaK11BI GGWCC 5 cut(s) 187, 420, 437, 1093, 2865
VspI ATTAAT 1 cut(s) 753
XagI CCTNNNNNAGG 1 cut(s) 1499
XapI RAATTY 3 cut(s) 669, 2129, 2317
XbaI TCTAGA 2 cut(s) 919, 1723
XcmI CCANNNNNNNNNTGG 2 cut(s) 127, 1282
XmaJI CCTAGG 1 cut(s) 449
XmnI GAANNNNTTC 1 cut(s) 2568
XspI CTAG 6 cut(s) 450, 710, 840, 920, 1121, 1724
ZrmI AGTACT 1 cut(s) 1166
Zsp2I ATGCAT 2 cut(s) 649, 1989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.