Rroxscaffold_7G00161920

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013421
Physical Location & Seq
Reverse (-)
4555346 .. 4566991
11646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161920.1

Sequence Viewer

Length: 2634 bp
ATGGCCGCGGATCTCCCGTCCCCATTGGGCCAGCTCTCGGCCCAGCTCACCGATTCGGAGCTCCGGCTCACCGCCTACGAGATCTTCGTCGCCGCCTGCCGCACCTCCACCGGCAAAGCCCTGACTTTCGTCTCTTCTTCGCTCTCCGACTCGCCGACTCAGCAGCACACCAACGGCGCCGCCAGCTCCCAATGGCTCGCCGGCGCTGCAGAGATCGCTCACGTCCGCCGCTGCCAGCAAGATGAAGAAGGCATTGGGCCTCAAATCGCCGGGTTCTTCTTCCGGGTCGAAGAAGAGCCCCGGGTCCGGGTCCGGGTCCGAGTCAGGAGAGCTCTGCTTAGAATTTCAGCTGGACAGGTAGGACGGCGAATTGAGTCGGTTGTAGTCCCACTGGAGCTGTTACAGCAGCTCAAGTCGTCTGATTTTACTGACCCGCAAGAACACGAAGAATGGCAGAAGAGAACCCTTAAGATTCTTGAGGCTGGTCTACTTTTGCATCCCTTTGTGCCGCTAGACAAGTCCAATAGCGCTGCACAGCGGCTACGACAGATTATTCATGGAGCGTTGGACAGGCCCTTTGAAACGGGGAGAAATAATGAGTCCATGCAGGTTCTTCGTAGTGCTGTTACGGCTCTTGCTTCCAGGTCATCTGATGGCTTATATGATACGTCCCACTGGGCAGATGGGTTACCATTGAATCTCCGCATTTATGAAATGCTTCTCCAAGCTGTGTTTGATAATCACGATGAGACATCTGTAATAGAGGAAGTGGACGAGCTAATGGAGCATATTAAGAAGACCTGGTCAATCCTTGGACTTAATCAGATGCTCCACAACCTTTGCTTTTCGTGGGTTTTGTTTAACCGTTTTGTTGCTACCGGCCAAGTTGAATTGGACCTGTTGTATGCTGCTGATACGCAGCTAGCCGAGGTTGCTAAAGATGCAAAGGCAACAAAGGATCCCGAGTACTGCAAGATCTTGAGTTCGACATTGACTTCAATATTGGGTTGGGCAGAGAAGAGACTCCTAGCCTATCATGACACCTTTGATAGCAATGATGGAGAAGGCAGATTCCAGCAGGAGAGCATCAAGAAACCAGCCAAACCCCTTCCTGTGCTGGCCATCCTTGCAAAGGATGTTGGTGAGCTGGCAGTTAAGGAGAAGCAGTTGTTCAGTCCAATATTAAAGCTATGGCATCCTTTTGCTGCCGGTGTGGCTGTGGCAACTCTTCATGCTTGCTATGCGAATGAAATTAAACAGTTCATATCGGGTATAGCGGAGTTGACACCGGATGCTGTACAAGTTTTGAGGGCTGCAGATAAGCTGGAGAAAGATCTTGTGCTCATAGCGGTTGAGGATTCTGTGGACAGTGATGATGGTGGCAAGGCAATAATTCGTGAGATGCCTCCTTATGAGGCTGAAGCTGCAATTGCAAATCTGGTAAAAGTGTGGATCAAGACAAGAGTGGACAGACTTAAAGAATGGGTTGATAGGAATCTGCAACAAGAGGAGTGGAATCCACCAGCAAGTGAAGATGGATATGCTCCATCTGCTGTTGAAGTTTTGCGAATTTTCGATGAAACTCTGGTTGCATTCTTTCAGCTGCCAATACCAATGCATCCTGCATTGCTTCCTGACTTAATGGCTGGCCTTGATAGATGTCTTCAATCTTACGTAACCAAGACAAAATCTGGATGTGGATCACGTAATACATTTGTTCCCACTATGCCTGCATTAACCAGATGCACTATGGAATCAAAGTTCCAAGGCTTTGGCAAAAAGAAAGAAAAAACGCCAACTTCTCAGAAGAGGAACTCTCAGGTTGCAACAGTCAATGGGGATAACTCTTTCGGGATACCACAGTTGCTTTGTCGCATAAACACATTGCAGAGAATACGGAGTGAGTTAGAAGTTTTGGAGAAACGGATTGTTACTCATCTGAGGAATTCTGAATCTGCTCATGTGGAAGACTTTTCAAATGGATTGGGGAAGAAGTTTGAGCTCTCTCCTGCGGCTTGTGTGGAGGTAATCACACAACTTTGTGAGGCAGTAGCTTATAAAATGGTCTTCCATGACCTCAGTCACGTTTTGTGGGATGGTTTGTATGTTGGAGAACCATCATCTTCTAGAATAGAGCCTTTTCTTGACGAGCTGGAGAAGAACTTACTTATCGTATCAAATACAGTGCATGAAAGAGTACGTACACGCATTATTACTGACATAATGAGAGCTTCCTTTGATGGTTTCTTGCTGGTTTTGCTTGCCGGAGGCCCCTCTCGTGTATTCTCCCGGAAGGATTCTCAAATAATAGAAGACGACTTCAAGTCCCTTAAAGATCTGTTCTGGGCCAATGGGGATGGCTTGCCTTCTGAATTGATAGATAAGTTTACAACTACAGTTAGAGGTGTACTTCCCCTTTTCAGAACTGATACTGAGAGTCTCATAGAACGGTTTAGACGTGTGACCTTGGAGTCATATGGCTCTTCTGCCAGGTCCAGACTCCCTTTACCCCCTACTTCCGGGCAGTGGAATCCAACTGAACCAAACACGCTCCTCCGTGTGTTGTGCAATAGAAATGATGAAGCAGCTTCTAAGTTTCTTAAGAAGACTTATAATTTGCCCAAGAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

877

Amino Acids

98.12

Weight (kDa)

6.0

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 477 - 876 5.1e-173 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25800
fragaria_vesca FvH4_2g35590 FvH4_2g35590
malus_domestica MD08G1113600.v1.1 MD15G1093300.v1.1
prunus_persica Prupe.1G448100_v2.0.a1
pyrus_communis pycom08g09420 pycom15g08610
rosa_chinensis RchiOBHm_Chr6g0306221
rosa_laevigata RLG00000010812
rosa_multiflora Rmu_sc0003594.1_g000002
rosa_roxburghii Rroxscaffold_7G00161920
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460700 Rh6BG440700 Rh6CG474700 Rh6DG461000
rosa_wichuraiana Rw6G040130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2058, 2613
AasI GACNNNNNNGTC 1 cut(s) 2470
Acc36I ACCTGC 1 cut(s) 598
AccB1I GGYRCC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 487
AccII CGCG 1 cut(s) 8
AclWI GGATC 5 cut(s) 18, 953, 966, 1460, 1708
AcoI YGGCCR 3 cut(s) 3, 880, 1119
AcsI RAATTY 3 cut(s) 342, 1569, 1945
AcuI CTGAAG 1 cut(s) 1440
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 5 cut(s) 968, 1299, 2199, 2203, 2409
AfeI AGCGCT 1 cut(s) 529
AfiI CCNNNNNNNGG 7 cut(s) 37, 306, 307, 313, 1132, 2519, 2526
AflII CTTAAG 2 cut(s) 467, 2600
AflIII ACRYGT 1 cut(s) 2458
AgsI TTSAA 8 cut(s) 581, 697, 890, 999, 1559, 1667, 1977, 2323
AhdI GACNNNNNGTC 1 cut(s) 2323
AjiI CACGTC 2 cut(s) 223, 2459
AjnI CCWGG 3 cut(s) 641, 800, 2489
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AloI GAACNNNNNNTCC 2 cut(s) 1745, 1777
Alw21I GWGCWC 4 cut(s) 63, 334, 1344, 2004
Alw26I GTCTC 4 cut(s) 136, 743, 1015, 2444
AlwI GGATC 5 cut(s) 18, 953, 966, 1460, 1708
Ama87I CYCGRG 2 cut(s) 300, 962
Aor51HI AGCGCT 1 cut(s) 529
ApoI RAATTY 3 cut(s) 342, 1569, 1945
ArsI GACNNNNNNTTYG 4 cut(s) 560, 592, 2599, 2631
Asp700I GAANNNNTTC 1 cut(s) 717
AspLEI GCGC 3 cut(s) 179, 206, 530
AsuC2I CCSGG 8 cut(s) 271, 284, 301, 302, 308, 314, 2290, 2521
AsuHPI GGTGA 3 cut(s) 40, 61, 1154
AsuNHI GCTAGC 1 cut(s) 922
AvaI CYCGRG 2 cut(s) 300, 962
AvaII GGWCC 5 cut(s) 304, 310, 316, 895, 2493
BaeI ACNNNNGTAYC 2 cut(s) 1847, 1880
BalI TGGCCA 1 cut(s) 1121
BamHI GGATCC 1 cut(s) 958
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 4 cut(s) 63, 300, 334, 2004
BauI CACGAG 1 cut(s) 2277
BbsI GAAGAC 6 cut(s) 803, 1655, 1974, 2059, 2319, 2612
Bbv12I GWGCWC 4 cut(s) 63, 334, 1344, 2004
BceAI ACGGC 3 cut(s) 190, 380, 645
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 3 cut(s) 643, 802, 2491
BciVI GTATCC 1 cut(s) 1848
BcnI CCSGG 8 cut(s) 271, 284, 301, 302, 308, 314, 2290, 2521
BcoDI GTCTC 4 cut(s) 136, 743, 1015, 2444
BfaI CTAG 4 cut(s) 512, 923, 1028, 2127
BfmI CTRYAG 3 cut(s) 207, 1314, 2394
BfoI RGCGCY 3 cut(s) 180, 207, 531
BfrI CTTAAG 2 cut(s) 467, 2600
BfuAI ACCTGC 1 cut(s) 598
BfuI GTATCC 1 cut(s) 1848
BglI GCCNNNNNGGC 1 cut(s) 1214
BglII AGATCT 4 cut(s) 81, 975, 1333, 2335
BmcAI AGTACT 1 cut(s) 968
Bme18I GGWCC 5 cut(s) 304, 310, 316, 895, 2493
BmeRI GACNNNNNGTC 1 cut(s) 2323
BmeT110I CYCGRG 2 cut(s) 300, 962
BmgBI CACGTC 2 cut(s) 223, 2459
BmiI GGNNCC 6 cut(s) 178, 305, 311, 317, 960, 2272
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 9 cut(s) 505, 816, 931, 1095, 1204, 1282, 1392, 1627, 1733
BmtI GCTAGC 1 cut(s) 926
BmuI ACTGGG 1 cut(s) 685
BoxI GACNNNNGTC 2 cut(s) 128, 2079
BpiI GAAGAC 6 cut(s) 803, 1655, 1974, 2059, 2319, 2612
BplI GAGNNNNNCTC 2 cut(s) 1801, 1833
BpmI CTGGAG 3 cut(s) 413, 1346, 2174
BpuEI CTTGAG 3 cut(s) 395, 497, 1000
BpuMI CCSGG 8 cut(s) 271, 284, 301, 302, 308, 314, 2290, 2521
BsaAI YACGTR 3 cut(s) 1675, 1706, 2201
BsaBI GATNNNNATC 2 cut(s) 1494, 1699
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 7 cut(s) 6, 299, 300, 811, 927, 1765, 2466
BsaWI WCCGGW 1 cut(s) 1288
BsaXI ACNNNNNCTCC 2 cut(s) 1151, 1181
Bsc4I CCNNNNNNNGG 7 cut(s) 37, 306, 307, 313, 1132, 2519, 2526
Bse118I RCCGGY 4 cut(s) 110, 200, 878, 1208
Bse1I ACTGG 2 cut(s) 396, 680
Bse3DI GCAATG 3 cut(s) 1060, 1625, 1883
Bse8I GATNNNNATC 2 cut(s) 1494, 1699
BseBI CCWGG 3 cut(s) 643, 802, 2491
BseDI CCNNGG 7 cut(s) 6, 299, 300, 811, 927, 1765, 2466
BseGI GGATG 9 cut(s) 496, 1122, 1141, 1195, 1297, 1618, 1700, 2101, 2362
BseJI GATNNNNATC 2 cut(s) 1494, 1699
BseLI CCNNNNNNNGG 7 cut(s) 37, 306, 307, 313, 1132, 2519, 2526
BseMI GCAATG 3 cut(s) 1060, 1625, 1883
BseMII CTCAG 6 cut(s) 173, 1817, 1832, 1931, 2092, 2424
BseNI ACTGG 2 cut(s) 396, 680
BseRI GAGGAG 2 cut(s) 1523, 2543
BseYI CCCAGC 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 516
Bsh1236I CGCG 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 176
BsiHKAI GWGCWC 4 cut(s) 63, 334, 1344, 2004
BsiHKCI CYCGRG 2 cut(s) 300, 962
BslFI GGGAC 4 cut(s) 4, 371, 655, 2311
BslI CCNNNNNNNGG 7 cut(s) 37, 306, 307, 313, 1132, 2519, 2526
BsmAI GTCTC 4 cut(s) 136, 743, 1015, 2444
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 4 cut(s) 4, 371, 655, 2311
BsmI GAATGC 1 cut(s) 1592
BsoBI CYCGRG 2 cut(s) 300, 962
Bsp1286I GDGCHC 5 cut(s) 63, 300, 334, 1344, 2004
Bsp1407I TGTACA 1 cut(s) 1297
Bsp143I GATC 9 cut(s) 10, 81, 213, 958, 975, 1333, 1452, 1700, 2335
BspCNI CTCAG 6 cut(s) 172, 1816, 1831, 1932, 2091, 2425
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 1 cut(s) 1036
BspLI GGNNCC 6 cut(s) 178, 305, 311, 317, 960, 2272
BspMAI CTGCAG 2 cut(s) 211, 1318
BspMI ACCTGC 1 cut(s) 598
BspOI GCTAGC 1 cut(s) 926
BspPI GGATC 5 cut(s) 18, 953, 966, 1460, 1708
BspQI GCTCTTC 2 cut(s) 288, 2488
BspT107I GGYRCC 1 cut(s) 176
BspTI CTTAAG 2 cut(s) 467, 2600
BsrDI GCAATG 3 cut(s) 1060, 1625, 1883
BsrFI RCCGGY 4 cut(s) 110, 200, 878, 1208
BsrGI TGTACA 1 cut(s) 1297
BsrI ACTGG 2 cut(s) 396, 680
BssAI RCCGGY 4 cut(s) 110, 200, 878, 1208
BssECI CCNNGG 7 cut(s) 6, 299, 300, 811, 927, 1765, 2466
BssMI GATC 9 cut(s) 10, 81, 213, 958, 975, 1333, 1452, 1700, 2335
BssNI GRCGYC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 2277
BssT1I CCWWGG 3 cut(s) 811, 1765, 2466
Bst2BI CACGAG 1 cut(s) 2277
Bst2UI CCWGG 3 cut(s) 643, 802, 2491
Bst4CI ACNGT 9 cut(s) 866, 1260, 1370, 1831, 1863, 2185, 2398, 2451, 2631
Bst6I CTCTTC 7 cut(s) 139, 288, 452, 1013, 1233, 1802, 2488
BstACI GRCGYC 1 cut(s) 177
BstAFI CTTAAG 2 cut(s) 467, 2600
BstAUI TGTACA 1 cut(s) 1297
BstBAI YACGTR 3 cut(s) 1675, 1706, 2201
BstDEI CTNAG 8 cut(s) 159, 338, 1803, 1818, 1940, 2078, 2433, 2592
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 687
BstENI CCTNNNNNAGG 1 cut(s) 1130
BstF5I GGATG 9 cut(s) 496, 1122, 1141, 1195, 1297, 1618, 1700, 2101, 2362
BstFNI CGCG 1 cut(s) 8
BstH2I RGCGCY 3 cut(s) 180, 207, 531
BstHHI GCGC 3 cut(s) 179, 206, 530
BstKTI GATC 9 cut(s) 13, 84, 216, 961, 978, 1336, 1455, 1703, 2338
BstMAI GTCTC 4 cut(s) 136, 743, 1015, 2444
BstMBI GATC 9 cut(s) 10, 81, 213, 958, 975, 1333, 1452, 1700, 2335
BstNI CCWGG 3 cut(s) 643, 802, 2491
BstPAI GACNNNNGTC 2 cut(s) 128, 2079
BstPI GGTNACC 1 cut(s) 687
BstSFI CTRYAG 3 cut(s) 207, 1314, 2394
BstSNI TACGTA 2 cut(s) 1675, 2201
BstUI CGCG 1 cut(s) 8
BstV2I GAAGAC 6 cut(s) 803, 1655, 1974, 2059, 2319, 2612
BstX2I RGATCY 6 cut(s) 10, 81, 958, 975, 1333, 2335
BstXI CCANNNNNNTGG 1 cut(s) 1772
BstYI RGATCY 6 cut(s) 10, 81, 958, 975, 1333, 2335
BsuI GTATCC 1 cut(s) 1848
BtgI CCRYGG 1 cut(s) 6
BtrI CACGTC 2 cut(s) 223, 2459
BtsCI GGATG 9 cut(s) 496, 1122, 1141, 1195, 1297, 1618, 1700, 2101, 2362
BtsI GCAGTG 1 cut(s) 2531
BtsIMutI CAGTG 5 cut(s) 389, 673, 1375, 2190, 2531
BveI ACCTGC 1 cut(s) 598
CciI TCATGA 1 cut(s) 1036
CfoI GCGC 3 cut(s) 179, 206, 530
Cfr10I RCCGGY 4 cut(s) 110, 200, 878, 1208
Cfr42I CCGCGG 1 cut(s) 9
Cfr9I CCCGGG 1 cut(s) 300
CsiI ACCWGGT 1 cut(s) 800
Csp6I GTAC 5 cut(s) 967, 1298, 2198, 2202, 2408
CspCI CAANNNNNGTGG 4 cut(s) 821, 856, 1493, 1528
CviAII CATG 7 cut(s) 557, 604, 1037, 1232, 1961, 2072, 2189
CviQI GTAC 5 cut(s) 967, 1298, 2198, 2202, 2408
DdeI CTNAG 8 cut(s) 159, 338, 1803, 1818, 1940, 2078, 2433, 2592
DinI GGCGCC 1 cut(s) 178
DpnI GATC 9 cut(s) 12, 83, 215, 960, 977, 1335, 1454, 1702, 2337
DpnII GATC 9 cut(s) 10, 81, 213, 958, 975, 1333, 1452, 1700, 2335
DrdI GACNNNNNNGTC 1 cut(s) 2470
DriI GACNNNNNGTC 1 cut(s) 2323
DseDI GACNNNNNNGTC 1 cut(s) 2470
EaeI YGGCCR 3 cut(s) 3, 880, 1119
Eam1104I CTCTTC 7 cut(s) 139, 288, 452, 1013, 1233, 1802, 2488
Eam1105I GACNNNNNGTC 1 cut(s) 2323
EarI CTCTTC 7 cut(s) 139, 288, 452, 1013, 1233, 1802, 2488
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 3 cut(s) 61, 332, 2002
Eco105I TACGTA 2 cut(s) 1675, 2201
Eco130I CCWWGG 3 cut(s) 811, 1765, 2466
Eco24I GRGCYC 4 cut(s) 63, 300, 334, 2004
Eco47I GGWCC 5 cut(s) 304, 310, 316, 895, 2493
Eco47III AGCGCT 1 cut(s) 529
Eco53kI GAGCTC 3 cut(s) 61, 332, 2002
Eco57I CTGAAG 1 cut(s) 1440
Eco88I CYCGRG 2 cut(s) 300, 962
Eco91I GGTNACC 1 cut(s) 687
EcoICRI GAGCTC 3 cut(s) 61, 332, 2002
EcoNI CCTNNNNNAGG 1 cut(s) 1130
EcoO109I RGGNCCY 2 cut(s) 573, 2270
EcoO65I GGTNACC 1 cut(s) 687
EcoRI GAATTC 1 cut(s) 1945
EcoRII CCWGG 3 cut(s) 641, 800, 2489
EcoT14I CCWWGG 3 cut(s) 811, 1765, 2466
EcoT22I ATGCAT 1 cut(s) 1620
EcoT38I GRGCYC 4 cut(s) 63, 300, 334, 2004
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
ErhI CCWWGG 3 cut(s) 811, 1765, 2466
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 7 cut(s) 560, 607, 1040, 1235, 1964, 2075, 2192
FaqI GGGAC 4 cut(s) 4, 371, 655, 2311
FatI CATG 7 cut(s) 556, 603, 1036, 1231, 1960, 2071, 2188
FauI CCCGC 1 cut(s) 441
FauNDI CATATG 1 cut(s) 2476
FblI GTMKAC 1 cut(s) 487
FokI GGATG 9 cut(s) 483, 1109, 1148, 1182, 1304, 1605, 1707, 2108, 2369
FriOI GRGCYC 4 cut(s) 63, 300, 334, 2004
FspBI CTAG 4 cut(s) 512, 923, 1028, 2127
GlaI GCGC 3 cut(s) 178, 205, 529
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 3 cut(s) 413, 1346, 2174
HaeII RGCGCY 3 cut(s) 180, 207, 531
HhaI GCGC 3 cut(s) 179, 206, 530
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 7 cut(s) 560, 607, 1040, 1235, 1964, 2075, 2192
Hin6I GCGC 3 cut(s) 177, 204, 528
HinP1I GCGC 3 cut(s) 177, 204, 528
HincII GTYRAC 1 cut(s) 1284
HindII GTYRAC 1 cut(s) 1284
HphI GGTGA 3 cut(s) 40, 61, 1154
Hpy166II GTNNAC 8 cut(s) 488, 772, 1284, 1366, 1468, 2204, 2388, 2408
Hpy8I GTNNAC 8 cut(s) 488, 772, 1284, 1366, 1468, 2204, 2388, 2408
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 5 cut(s) 242, 1058, 1118, 2287, 2376
HpyCH4III ACNGT 9 cut(s) 866, 1260, 1370, 1831, 1863, 2185, 2398, 2451, 2631
HpyCH4IV ACGT 7 cut(s) 222, 668, 1674, 1705, 2085, 2200, 2458
HpyF3I CTNAG 8 cut(s) 159, 338, 1803, 1818, 1940, 2078, 2433, 2592
HpySE526I ACGT 7 cut(s) 222, 668, 1674, 1705, 2085, 2200, 2458
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 7 cut(s) 560, 607, 1040, 1235, 1964, 2075, 2192
HspAI GCGC 3 cut(s) 177, 204, 528
KasI GGCGCC 1 cut(s) 176
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
KspI CCGCGG 1 cut(s) 9
Kzo9I GATC 9 cut(s) 10, 81, 213, 958, 975, 1333, 1452, 1700, 2335
LguI GCTCTTC 2 cut(s) 288, 2488
LmnI GCTCC 9 cut(s) 58, 66, 191, 394, 560, 784, 834, 1549, 2556
LweI GCATC 9 cut(s) 505, 816, 931, 1095, 1204, 1282, 1392, 1627, 1733
MabI ACCWGGT 1 cut(s) 800
MaeI CTAG 4 cut(s) 512, 923, 1028, 2127
MaeII ACGT 7 cut(s) 222, 668, 1674, 1705, 2085, 2200, 2458
MaeIII GTNAC 7 cut(s) 399, 625, 687, 1675, 1930, 2081, 2461
MalI GATC 9 cut(s) 12, 83, 215, 960, 977, 1335, 1454, 1702, 2337
MboI GATC 9 cut(s) 10, 81, 213, 958, 975, 1333, 1452, 1700, 2335
MfeI CAATTG 1 cut(s) 1428
MflI RGATCY 6 cut(s) 10, 81, 958, 975, 1333, 2335
MhlI GDGCHC 5 cut(s) 63, 300, 334, 1344, 2004
MlsI TGGCCA 1 cut(s) 1121
MluNI TGGCCA 1 cut(s) 1121
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 9 cut(s) 143, 151, 330, 383, 608, 1017, 2446, 2480, 2493
MmeI TCCRAC 4 cut(s) 171, 546, 2089, 2558
Mox20I TGGCCA 1 cut(s) 1121
Mph1103I ATGCAT 1 cut(s) 1620
MreI CGCCGGCG 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 717
MscI TGGCCA 1 cut(s) 1121
Msp20I TGGCCA 1 cut(s) 1121
MspA1I CMGCKG 5 cut(s) 8, 231, 350, 538, 1603
MspCI CTTAAG 2 cut(s) 467, 2600
MunI CAATTG 1 cut(s) 1428
Mva1269I GAATGC 1 cut(s) 1592
MvaI CCWGG 3 cut(s) 643, 802, 2491
MvnI CGCG 1 cut(s) 8
NaeI GCCGGC 1 cut(s) 202
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 8 cut(s) 271, 284, 301, 302, 308, 314, 2290, 2521
NdeI CATATG 1 cut(s) 2476
NdeII GATC 9 cut(s) 10, 81, 213, 958, 975, 1333, 1452, 1700, 2335
NgoMIV GCCGGC 1 cut(s) 200
NheI GCTAGC 1 cut(s) 922
NlaIII CATG 7 cut(s) 560, 607, 1040, 1235, 1964, 2075, 2192
NlaIV GGNNCC 6 cut(s) 178, 305, 311, 317, 960, 2272
NmeAIII GCCGAG 2 cut(s) 17, 952
NmuCI GTSAC 2 cut(s) 2081, 2461
NsiI ATGCAT 1 cut(s) 1620
PagI TCATGA 1 cut(s) 1036
PciSI GCTCTTC 2 cut(s) 288, 2488
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 2455
PctI GAATGC 1 cut(s) 1592
PdiI GCCGGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 717
PflFI GACNNNGTC 1 cut(s) 802
PfoI TCCNGGA 1 cut(s) 2288
PleI GAGTC 9 cut(s) 143, 151, 329, 382, 607, 1017, 2445, 2479, 2493
PluTI GGCGCC 1 cut(s) 180
PpsI GAGTC 9 cut(s) 143, 151, 329, 382, 607, 1017, 2445, 2479, 2493
Ppu21I YACGTR 3 cut(s) 1675, 1706, 2201
PshAI GACNNNNGTC 2 cut(s) 128, 2079
PsiI TTATAA 2 cut(s) 2058, 2613
Psp124BI GAGCTC 3 cut(s) 63, 334, 2004
Psp6I CCWGG 3 cut(s) 641, 800, 2489
PspEI GGTNACC 1 cut(s) 687
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 3 cut(s) 641, 800, 2489
PspN4I GGNNCC 6 cut(s) 178, 305, 311, 317, 960, 2272
PstI CTGCAG 2 cut(s) 211, 1318
PsuI RGATCY 6 cut(s) 10, 81, 958, 975, 1333, 2335
PsyI GACNNNGTC 1 cut(s) 802
PvuII CAGCTG 2 cut(s) 350, 1603
RsaI GTAC 5 cut(s) 968, 1299, 2199, 2203, 2409
RsaNI GTAC 5 cut(s) 967, 1298, 2198, 2202, 2408
SacI GAGCTC 3 cut(s) 63, 334, 2004
SacII CCGCGG 1 cut(s) 9
SapI GCTCTTC 2 cut(s) 288, 2488
Sau3AI GATC 9 cut(s) 10, 81, 213, 958, 975, 1333, 1452, 1700, 2335
ScaI AGTACT 1 cut(s) 968
SchI GAGTC 9 cut(s) 143, 151, 330, 383, 608, 1017, 2446, 2480, 2493
SduI GDGCHC 5 cut(s) 63, 300, 334, 1344, 2004
SexAI ACCWGGT 1 cut(s) 800
SfaNI GCATC 9 cut(s) 505, 816, 931, 1095, 1204, 1282, 1392, 1627, 1733
SfcI CTRYAG 3 cut(s) 207, 1314, 2394
SfoI GGCGCC 1 cut(s) 178
Sfr303I CCGCGG 1 cut(s) 9
SgrAI CRCCGGYG 1 cut(s) 200
SgrBI CCGCGG 1 cut(s) 9
SinI GGWCC 5 cut(s) 304, 310, 316, 895, 2493
SmaI CCCGGG 1 cut(s) 302
SmlI CTYRAG 5 cut(s) 410, 467, 476, 979, 2600
SmoI CTYRAG 5 cut(s) 410, 467, 476, 979, 2600
SnaBI TACGTA 2 cut(s) 1675, 2201
SspDI GGCGCC 1 cut(s) 176
SspI AATATT 2 cut(s) 1002, 1182
SspMI CTAG 4 cut(s) 512, 923, 1028, 2127
SstI GAGCTC 3 cut(s) 63, 334, 2004
StyI CCWWGG 3 cut(s) 811, 1765, 2466
TaaI ACNGT 9 cut(s) 866, 1260, 1370, 1831, 1863, 2185, 2398, 2451, 2631
TaiI ACGT 7 cut(s) 225, 671, 1677, 1708, 2088, 2203, 2461
TaqI TCGA 3 cut(s) 288, 986, 1575
TatI WGTACW 3 cut(s) 966, 1297, 2407
TauI GCSGC 8 cut(s) 8, 95, 102, 182, 231, 511, 541, 2015
TscAI CASTG 5 cut(s) 396, 680, 1375, 2190, 2531
TseFI GTSAC 2 cut(s) 2081, 2461
Tsp45I GTSAC 2 cut(s) 2081, 2461
TspDTI ATGAA 9 cut(s) 258, 545, 726, 1220, 1252, 1263, 1593, 2205, 2595
TspGWI ACGGA 3 cut(s) 1912, 1939, 2546
TspMI CCCGGG 1 cut(s) 300
TspRI CASTG 5 cut(s) 396, 680, 1375, 2190, 2531
Tth111I GACNNNGTC 1 cut(s) 802
Vha464I CTTAAG 2 cut(s) 467, 2600
VpaK11BI GGWCC 5 cut(s) 304, 310, 316, 895, 2493
XagI CCTNNNNNAGG 1 cut(s) 1130
XapI RAATTY 3 cut(s) 342, 1569, 1945
XbaI TCTAGA 1 cut(s) 2126
XcmI CCANNNNNNNNNTGG 2 cut(s) 680, 1747
XmaI CCCGGG 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 487
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 4 cut(s) 512, 923, 1028, 2127
ZrmI AGTACT 1 cut(s) 968
Zsp2I ATGCAT 1 cut(s) 1620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.