Rw6G040130

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013421
Physical Location & Seq
Forward (+)
63986438 .. 63990336
3899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040130.1

Sequence Viewer

Length: 3003 bp
ATGGCTCATCTTTTCAGGGAGCTCTCACTGGGCCATTCGAAGAGAGGAGGGGCCCACTCCACCACCGGCAGCGCCCCCGCGCTGACGATACCTACGAAGCCGACCACCATGGCCGCGGATCTCCCGTCCCCATTGGGCCAGCTCTCGGCCCAGCTCACCGATTCGGAGCTCCGGCTCACCGCCTACGAGATCTTCGTCGCCGCCTGCCGCACCTCAACCGGCAAAGCCCTGACTTTCGTCTCTTCTTCGCTCTCCGACTCGCCGACTCAGCAGCACACCAACGGCGCCGCCAGCTCCCCCAATGGCTCGCCGGCGCTGCAGAGATCGCTCACCTCCGCCGCCGCCAGCAAGATGAAGAAGGCATTGGGCCTCAAATCGCCGGGTTCTTCTTCCGGGTCGAAGAAGAGCCCCGGGTCCGGGTCCGGGTCCGGGTCGGGGCCCGGAAAGCCCAAGCGGGCTATGACGGTGGGGGAGCTGATGAGGATCCAAATGGGGATTTCTGAAGCTATGGACTCGAGAGTCAGGAGAGCTCTGCTTAGAATCTCAGCTGGACAGGTAGGACGGCGAATTGAGTCGGTTGTAGTCCCACTGGAGCTGTTACAGCAGCTCAAGTCGTCTGATTTTACTGACCCGCAAGAACACGAAGAATGGCAGAAAAGAACCCTTAAGATTCTTGAGGCTGGTCTACTTTTGCATCCCTTTGTGCCGCTAGACAAGTCCAATAGCGCTGCACAGCGGCTACGACAGATTATTCATGGAGCGTTGGACAGGCCCTTTGAAACGGGGAGAAATAATGAGTCCATGCAGGTTCTTCGTAGTGCTGTTACGGCTCTTGCTTCCAGGTCATCTGATGGCTTATATGATACGTCCCACTGGGCAGATGGGTTACCATTGAACCTCCGCATTTATGAAATGCTTCTCCAAGCCGTGTTTGATAATCACGATGAGACATCTGTAATAGAGGAAGTGGACGAGCTAATGGAGCATATTAAGAAGACCTGGTCAATCCTCGGACTTAATCAGATGCTCCACAACCTTTGCTTTACATGGGTTTTGTTTAACCGTTTTGTTGCTACCGGCCAAGTTGAATTGGACCTGTTGTATGCTGCTGATACGCAGCTAGCCGAGGTTGCTAAAGATGCAAAGGCAACAAAGGATCCCGAGTACTGCAAGATCTTGAGTTCGACATTGACTTCAATATTGGGTTGGGCAGAGAAGAGACTCCTAGCCTATCATGACACTTTTGATAGCAGTAATATTGATACCATGCAGGCCATTGTTTCTCTGGGAGTAGTAGCAGCTAAGATTCTAGTTGAAGACATATCAAATGAGTATCGCAGGAGGAGAAAAAATGAAGTTGACGTTGCTCGCAACAGGATTGACACTTACATTAGATCATCATTACGCACTGCTTTTGCTCAGATGATGGAGAAGGCAGATTCCAGCAGGAGAGCATCAAGAAACCAGCCAAACCCCCTTCCTGTGCTGGCCATCCTTGCAAAGGATGTTGGTGAGCTGGCAGTTAAGGAGAAGCAGTTGTTCAGTCCAATACTAAAGATATGGCATCCTTTTGCTGCCGGTGTGGCTGTGGCAACTCTTCATGCTTGCTATGCGAATGAAATTAAACAGTTCATATCGGGTATAGCGGAGTTGACACCGGATGCTGTACAAGTTTTGAGAGCTGCAGATAAGCTGGAGAAAGATCTTGTGCTCATAGCAGTTGAGGATTCTGTGGACAGTGATGATGGTGGCAAGGCAATAATTCGTGAGATGCCTCCTTATGAGGCTGAAGCTGCAATTGCAAATCTGGTAAAAGTGTGGATCAAGACAAGAGTGGACAGACTTAAAGAATGGGTTGATAGGAATCTGCAACAAGAGGAGTGGAATCCACCAGCAAGTGAAGATGGATATGCTCCATCTGCTGTTGAAGTTTTGCGAATTTTCGATGAAACTCTGGTTGCATTCTTTCAGCTGCCAATACCAATGCATCCTGCATTGCTTCCTGACTTGATGGCTGGCCTTGATAGATGTCTTCAATATTATGTAACCAAGACAAAATCTGGATGTGGATCACGTAATACATTTGTTCCCACTATGCCTGCATTAACCAGATGCACTATGGAATCAAAGTTCCAAGGTTTTGGCAAAAAGAAAGAAAAAACGCCAACTTCTCAGAAGAGGAACTCTCAGGTTGCAACAGTCAATGGGGATAACTCTTTCGGGATACCACAGTTGCTTTGTCGCATAAACACATTGCAGAGAATCCGGAGTGAGTTAGAAGTTTTGGAGAAACGGATTGTTACTCATCTGAGGAATTCTGAATCTGCTCATGTAGAAGACTTTTCGAATGGATTGGGGAAGAAGTTTGAGCTCTCTCCTGCGGCTTGTGTGGAGGTAATCACACAACTTTGTGAGGCAGTAGCTTATAAAATGGTCTTCCATGACCTCAGTCACGTTCTGTGGGATGGTTTGTATGTTGGAGAACCATCATCTTCTAGAATAGAGCCTTTTCTTGACGAGCTGGAGAAGAACTTACTTATCGTATCAAATACAGTGCATGAAAGAGTACGTACACGCATTATTACTGACATAATGAGAGCTTCCTTTGATGGTTTCTTGCTGGTTTTGCTTGCCGGAGGCCCCTCTCGTGTATTCTCCCGGAAGGATTCTCAAATAATAGAAGATGACTTCAAGTCCCTTAAAGATCTGTTCTGGGCCAATGGGGATGGCTTGCCTTCTGAATTGATAGATAAGTTTACAACTACAGTTAGAGGTGTACTTCCCCTTTTCAGAACTGATACTGAGAGTCTCATAGAACGGTTTAGACGTGTGACCTTGGAGTCATATGGCTCTTCTGCCAGGTCCAGACTCCCTTTACCCCCTACTTCCGGGCAGTGGAATCCAACTGAACCAAACACACTCCTCCGTGTGTTATGCAATAGAAATGATGAAGCAGCTTCTAAGTTTCTTAAGAAGACTTATAATTTGCCCAAGAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

1000

Amino Acids

110.68

Weight (kDa)

8.41

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 600 - 999 4.9e-173 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25800
fragaria_vesca FvH4_2g35590 FvH4_2g35590
malus_domestica MD08G1113600.v1.1 MD15G1093300.v1.1
prunus_persica Prupe.1G448100_v2.0.a1
pyrus_communis pycom08g09420 pycom15g08610
rosa_chinensis RchiOBHm_Chr6g0306221
rosa_laevigata RLG00000010812
rosa_multiflora Rmu_sc0003594.1_g000002
rosa_roxburghii Rroxscaffold_7G00161920
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460700 Rh6BG440700 Rh6CG474700 Rh6DG461000
rosa_wichuraiana Rw6G040130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2427, 2982
AasI GACNNNNNNGTC 2 cut(s) 518, 2839
Acc36I ACCTGC 1 cut(s) 796
AccB1I GGYRCC 1 cut(s) 284
AccI GTMKAC 1 cut(s) 685
AccII CGCG 2 cut(s) 80, 116
AccIII TCCGGA 1 cut(s) 2265
AclWI GGATC 7 cut(s) 126, 478, 491, 1151, 1164, 1829, 2077
AcoI YGGCCR 3 cut(s) 111, 1078, 1488
AcsI RAATTY 2 cut(s) 1938, 2314
AcuI CTGAAG 2 cut(s) 522, 1809
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 5 cut(s) 1166, 1668, 2568, 2572, 2778
AfeI AGCGCT 1 cut(s) 727
AfiI CCNNNNNNNGG 9 cut(s) 145, 416, 417, 423, 429, 435, 1501, 2888, 2895
AflII CTTAAG 2 cut(s) 665, 2969
AflIII ACRYGT 1 cut(s) 2827
AgsI TTSAA 8 cut(s) 779, 895, 1088, 1197, 1316, 1928, 2036, 2692
AhdI GACNNNNNGTC 1 cut(s) 2692
AjiI CACGTC 1 cut(s) 2828
AjnI CCWGG 3 cut(s) 839, 998, 2858
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AloI GAACNNNNNNTCC 2 cut(s) 2114, 2146
Alw21I GWGCWC 5 cut(s) 24, 171, 532, 1713, 2373
Alw26I GTCTC 4 cut(s) 244, 941, 1213, 2813
AlwI GGATC 7 cut(s) 126, 478, 491, 1151, 1164, 1829, 2077
Ama87I CYCGRG 3 cut(s) 410, 514, 1160
Aor13HI TCCGGA 1 cut(s) 2265
Aor51HI AGCGCT 1 cut(s) 727
ApaI GGGCCC 2 cut(s) 55, 441
ApoI RAATTY 2 cut(s) 1938, 2314
ArsI GACNNNNNNTTYG 4 cut(s) 758, 790, 2968, 3000
Asp700I GAANNNNTTC 1 cut(s) 915
AspLEI GCGC 5 cut(s) 74, 82, 287, 316, 728
AsuHPI GGTGA 4 cut(s) 148, 169, 322, 1523
AsuII TTCGAA 2 cut(s) 38, 2345
AsuNHI GCTAGC 1 cut(s) 1120
AvaI CYCGRG 3 cut(s) 410, 514, 1160
AvaII GGWCC 5 cut(s) 414, 420, 426, 1093, 2862
BaeGI GKGCMC 2 cut(s) 55, 441
BaeI ACNNNNGTAYC 2 cut(s) 2216, 2249
BalI TGGCCA 1 cut(s) 1490
BamHI GGATCC 2 cut(s) 483, 1156
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 7 cut(s) 24, 55, 171, 410, 441, 532, 2373
BauI CACGAG 1 cut(s) 2646
BbsI GAAGAC 6 cut(s) 1001, 1323, 2024, 2343, 2428, 2981
Bbv12I GWGCWC 5 cut(s) 24, 171, 532, 1713, 2373
BceAI ACGGC 4 cut(s) 298, 578, 843, 911
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BciT130I CCWGG 3 cut(s) 841, 1000, 2860
BciVI GTATCC 1 cut(s) 2217
BcoDI GTCTC 4 cut(s) 244, 941, 1213, 2813
BfaI CTAG 5 cut(s) 710, 1121, 1226, 1310, 2496
BfmI CTRYAG 3 cut(s) 317, 1683, 2763
BfoI RGCGCY 4 cut(s) 75, 288, 317, 729
BfrI CTTAAG 2 cut(s) 665, 2969
BfuAI ACCTGC 1 cut(s) 796
BfuI GTATCC 1 cut(s) 2217
BglI GCCNNNNNGGC 1 cut(s) 1583
BglII AGATCT 4 cut(s) 189, 1173, 1702, 2704
BmcAI AGTACT 1 cut(s) 1166
Bme18I GGWCC 5 cut(s) 414, 420, 426, 1093, 2862
BmeRI GACNNNNNGTC 1 cut(s) 2692
BmeT110I CYCGRG 3 cut(s) 410, 514, 1160
BmgBI CACGTC 1 cut(s) 2828
BmrI ACTGGG 2 cut(s) 38, 883
BmsI GCATC 9 cut(s) 703, 1014, 1129, 1463, 1573, 1651, 1761, 1996, 2102
BmtI GCTAGC 1 cut(s) 1124
BmuI ACTGGG 2 cut(s) 38, 883
BoxI GACNNNNGTC 2 cut(s) 236, 2448
BpiI GAAGAC 6 cut(s) 1001, 1323, 2024, 2343, 2428, 2981
BplI GAGNNNNNCTC 2 cut(s) 2170, 2202
BpmI CTGGAG 3 cut(s) 611, 1715, 2543
Bpu14I TTCGAA 2 cut(s) 38, 2345
BpuEI CTTGAG 3 cut(s) 593, 695, 1198
BsaAI YACGTR 2 cut(s) 2075, 2570
BsaBI GATNNNNATC 3 cut(s) 482, 1863, 2068
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 8 cut(s) 108, 114, 409, 410, 1009, 1125, 2134, 2835
BsaWI WCCGGW 2 cut(s) 1657, 2265
BsaXI ACNNNNNCTCC 2 cut(s) 1520, 1550
Bsc4I CCNNNNNNNGG 9 cut(s) 145, 416, 417, 423, 429, 435, 1501, 2888, 2895
Bse118I RCCGGY 5 cut(s) 65, 218, 310, 1076, 1577
Bse1I ACTGG 3 cut(s) 33, 594, 878
Bse3DI GCAATG 2 cut(s) 1994, 2252
Bse8I GATNNNNATC 3 cut(s) 482, 1863, 2068
BseAI TCCGGA 1 cut(s) 2265
BseBI CCWGG 3 cut(s) 841, 1000, 2860
BseDI CCNNGG 8 cut(s) 108, 114, 409, 410, 1009, 1125, 2134, 2835
BseGI GGATG 9 cut(s) 694, 1491, 1510, 1564, 1666, 1987, 2069, 2470, 2731
BseJI GATNNNNATC 3 cut(s) 482, 1863, 2068
BseLI CCNNNNNNNGG 9 cut(s) 145, 416, 417, 423, 429, 435, 1501, 2888, 2895
BseMI GCAATG 2 cut(s) 1994, 2252
BseMII CTCAG 8 cut(s) 281, 558, 1433, 2186, 2201, 2300, 2461, 2793
BseNI ACTGG 3 cut(s) 33, 594, 878
BseRI GAGGAG 4 cut(s) 60, 1357, 1892, 2912
BseSI GKGCMC 2 cut(s) 55, 441
BseYI CCCAGC 1 cut(s) 150
BsgI GTGCAG 1 cut(s) 714
Bsh1236I CGCG 2 cut(s) 80, 116
BshNI GGYRCC 1 cut(s) 284
BsiHKAI GWGCWC 5 cut(s) 24, 171, 532, 1713, 2373
BsiHKCI CYCGRG 3 cut(s) 410, 514, 1160
BslFI GGGAC 4 cut(s) 112, 569, 853, 2680
BslI CCNNNNNNNGG 9 cut(s) 145, 416, 417, 423, 429, 435, 1501, 2888, 2895
BsmAI GTCTC 4 cut(s) 244, 941, 1213, 2813
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 4 cut(s) 112, 569, 853, 2680
BsmI GAATGC 1 cut(s) 1961
BsoBI CYCGRG 3 cut(s) 410, 514, 1160
Bsp119I TTCGAA 2 cut(s) 38, 2345
Bsp120I GGGCCC 2 cut(s) 51, 437
Bsp1286I GDGCHC 8 cut(s) 24, 55, 171, 410, 441, 532, 1713, 2373
Bsp13I TCCGGA 1 cut(s) 2265
Bsp1407I TGTACA 1 cut(s) 1666
Bsp19I CCATGG 1 cut(s) 108
BspCNI CTCAG 8 cut(s) 280, 557, 1432, 2185, 2200, 2301, 2460, 2794
BspEI TCCGGA 1 cut(s) 2265
BspFNI CGCG 2 cut(s) 80, 116
BspHI TCATGA 1 cut(s) 1234
BspMAI CTGCAG 2 cut(s) 321, 1687
BspMI ACCTGC 1 cut(s) 796
BspOI GCTAGC 1 cut(s) 1124
BspPI GGATC 7 cut(s) 126, 478, 491, 1151, 1164, 1829, 2077
BspQI GCTCTTC 2 cut(s) 398, 2857
BspT104I TTCGAA 2 cut(s) 38, 2345
BspT107I GGYRCC 1 cut(s) 284
BspTI CTTAAG 2 cut(s) 665, 2969
BsrDI GCAATG 2 cut(s) 1994, 2252
BsrFI RCCGGY 5 cut(s) 65, 218, 310, 1076, 1577
BsrGI TGTACA 1 cut(s) 1666
BsrI ACTGG 3 cut(s) 33, 594, 878
BssAI RCCGGY 5 cut(s) 65, 218, 310, 1076, 1577
BssECI CCNNGG 8 cut(s) 108, 114, 409, 410, 1009, 1125, 2134, 2835
BssNI GRCGYC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 2646
BssT1I CCWWGG 3 cut(s) 108, 2134, 2835
Bst2BI CACGAG 1 cut(s) 2646
Bst2UI CCWGG 3 cut(s) 841, 1000, 2860
Bst6I CTCTTC 7 cut(s) 35, 247, 398, 1211, 1602, 2171, 2857
BstACI GRCGYC 1 cut(s) 285
BstAFI CTTAAG 2 cut(s) 665, 2969
BstAUI TGTACA 1 cut(s) 1666
BstBAI YACGTR 2 cut(s) 2075, 2570
BstBI TTCGAA 2 cut(s) 38, 2345
BstDSI CCRYGG 2 cut(s) 108, 114
BstEII GGTNACC 1 cut(s) 885
BstENI CCTNNNNNAGG 1 cut(s) 1499
BstF5I GGATG 9 cut(s) 694, 1491, 1510, 1564, 1666, 1987, 2069, 2470, 2731
BstFNI CGCG 2 cut(s) 80, 116
BstH2I RGCGCY 4 cut(s) 75, 288, 317, 729
BstHHI GCGC 5 cut(s) 74, 82, 287, 316, 728
BstMAI GTCTC 4 cut(s) 244, 941, 1213, 2813
BstNI CCWGG 3 cut(s) 841, 1000, 2860
BstPAI GACNNNNGTC 2 cut(s) 236, 2448
BstPI GGTNACC 1 cut(s) 885
BstSFI CTRYAG 3 cut(s) 317, 1683, 2763
BstSLI GKGCMC 2 cut(s) 55, 441
BstSNI TACGTA 1 cut(s) 2570
BstUI CGCG 2 cut(s) 80, 116
BstV2I GAAGAC 6 cut(s) 1001, 1323, 2024, 2343, 2428, 2981
BstX2I RGATCY 7 cut(s) 118, 189, 483, 1156, 1173, 1702, 2704
BstXI CCANNNNNNTGG 1 cut(s) 2141
BstYI RGATCY 7 cut(s) 118, 189, 483, 1156, 1173, 1702, 2704
BsuI GTATCC 1 cut(s) 2217
BtgI CCRYGG 2 cut(s) 108, 114
BtrI CACGTC 1 cut(s) 2828
BtsCI GGATG 9 cut(s) 694, 1491, 1510, 1564, 1666, 1987, 2069, 2470, 2731
BtsI GCAGTG 2 cut(s) 1407, 2900
BtsIMutI CAGTG 7 cut(s) 26, 587, 871, 1407, 1744, 2559, 2900
BveI ACCTGC 1 cut(s) 796
CciI TCATGA 1 cut(s) 1234
CfoI GCGC 5 cut(s) 74, 82, 287, 316, 728
Cfr10I RCCGGY 5 cut(s) 65, 218, 310, 1076, 1577
Cfr42I CCGCGG 1 cut(s) 117
Cfr9I CCCGGG 1 cut(s) 410
CsiI ACCWGGT 1 cut(s) 998
Csp6I GTAC 5 cut(s) 1165, 1667, 2567, 2571, 2777
CspCI CAANNNNNGTGG 4 cut(s) 1019, 1054, 1862, 1897
CviQI GTAC 5 cut(s) 1165, 1667, 2567, 2571, 2777
DinI GGCGCC 1 cut(s) 286
DrdI GACNNNNNNGTC 2 cut(s) 518, 2839
DriI GACNNNNNGTC 1 cut(s) 2692
DseDI GACNNNNNNGTC 2 cut(s) 518, 2839
EaeI YGGCCR 3 cut(s) 111, 1078, 1488
Eam1104I CTCTTC 7 cut(s) 35, 247, 398, 1211, 1602, 2171, 2857
Eam1105I GACNNNNNGTC 1 cut(s) 2692
EarI CTCTTC 7 cut(s) 35, 247, 398, 1211, 1602, 2171, 2857
EciI GGCGGA 1 cut(s) 325
Ecl136II GAGCTC 4 cut(s) 22, 169, 530, 2371
Eco105I TACGTA 1 cut(s) 2570
Eco130I CCWWGG 3 cut(s) 108, 2134, 2835
Eco24I GRGCYC 7 cut(s) 24, 55, 171, 410, 441, 532, 2373
Eco47I GGWCC 5 cut(s) 414, 420, 426, 1093, 2862
Eco47III AGCGCT 1 cut(s) 727
Eco53kI GAGCTC 4 cut(s) 22, 169, 530, 2371
Eco57I CTGAAG 2 cut(s) 522, 1809
Eco88I CYCGRG 3 cut(s) 410, 514, 1160
Eco91I GGTNACC 1 cut(s) 885
EcoICRI GAGCTC 4 cut(s) 22, 169, 530, 2371
EcoNI CCTNNNNNAGG 1 cut(s) 1499
EcoO109I RGGNCCY 4 cut(s) 51, 437, 771, 2639
EcoO65I GGTNACC 1 cut(s) 885
EcoRI GAATTC 1 cut(s) 2314
EcoRII CCWGG 3 cut(s) 839, 998, 2858
EcoT14I CCWWGG 3 cut(s) 108, 2134, 2835
EcoT22I ATGCAT 1 cut(s) 1989
EcoT38I GRGCYC 7 cut(s) 24, 55, 171, 410, 441, 532, 2373
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
ErhI CCWWGG 3 cut(s) 108, 2134, 2835
Esp3I CGTCTC 1 cut(s) 244
FaqI GGGAC 4 cut(s) 112, 569, 853, 2680
FauI CCCGC 3 cut(s) 85, 447, 639
FauNDI CATATG 1 cut(s) 2845
FblI GTMKAC 1 cut(s) 685
FokI GGATG 9 cut(s) 681, 1478, 1517, 1551, 1673, 1974, 2076, 2477, 2738
FriOI GRGCYC 7 cut(s) 24, 55, 171, 410, 441, 532, 2373
FspBI CTAG 5 cut(s) 710, 1121, 1226, 1310, 2496
GlaI GCGC 5 cut(s) 73, 81, 286, 315, 727
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 3 cut(s) 611, 1715, 2543
HaeII RGCGCY 4 cut(s) 75, 288, 317, 729
HhaI GCGC 5 cut(s) 74, 82, 287, 316, 728
Hin1I GRCGYC 1 cut(s) 285
Hin6I GCGC 5 cut(s) 72, 80, 285, 314, 726
HinP1I GCGC 5 cut(s) 72, 80, 285, 314, 726
HincII GTYRAC 2 cut(s) 1360, 1653
HindII GTYRAC 2 cut(s) 1360, 1653
HphI GGTGA 4 cut(s) 148, 169, 322, 1523
Hpy166II GTNNAC 9 cut(s) 686, 970, 1360, 1653, 1735, 1837, 2573, 2757, 2777
Hpy8I GTNNAC 9 cut(s) 686, 970, 1360, 1653, 1735, 1837, 2573, 2757, 2777
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 5 cut(s) 352, 1426, 1487, 2656, 2745
HpyCH4IV ACGT 6 cut(s) 866, 1362, 2074, 2454, 2569, 2827
HpySE526I ACGT 6 cut(s) 866, 1362, 2074, 2454, 2569, 2827
Hsp92I GRCGYC 1 cut(s) 285
HspAI GCGC 5 cut(s) 72, 80, 285, 314, 726
KasI GGCGCC 1 cut(s) 284
Kpn2I TCCGGA 1 cut(s) 2265
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
KspI CCGCGG 1 cut(s) 117
LguI GCTCTTC 2 cut(s) 398, 2857
LweI GCATC 9 cut(s) 703, 1014, 1129, 1463, 1573, 1651, 1761, 1996, 2102
MabI ACCWGGT 1 cut(s) 998
MaeI CTAG 5 cut(s) 710, 1121, 1226, 1310, 2496
MaeII ACGT 6 cut(s) 866, 1362, 2074, 2454, 2569, 2827
MaeIII GTNAC 7 cut(s) 597, 823, 885, 2044, 2299, 2450, 2830
MfeI CAATTG 1 cut(s) 1797
MflI RGATCY 7 cut(s) 118, 189, 483, 1156, 1173, 1702, 2704
MhlI GDGCHC 8 cut(s) 24, 55, 171, 410, 441, 532, 1713, 2373
MlsI TGGCCA 1 cut(s) 1490
MluCI AATT 9 cut(s) 567, 1088, 1620, 1761, 1797, 1938, 2314, 2741, 2983
MluNI TGGCCA 1 cut(s) 1490
Mly113I GGCGCC 1 cut(s) 285
MmeI TCCRAC 4 cut(s) 279, 744, 2458, 2927
Mox20I TGGCCA 1 cut(s) 1490
Mph1103I ATGCAT 1 cut(s) 1989
MreI CGCCGGCG 1 cut(s) 310
MroI TCCGGA 1 cut(s) 2265
MroNI GCCGGC 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 915
MscI TGGCCA 1 cut(s) 1490
Msp20I TGGCCA 1 cut(s) 1490
MspA1I CMGCKG 4 cut(s) 116, 548, 736, 1972
MspCI CTTAAG 2 cut(s) 665, 2969
MunI CAATTG 1 cut(s) 1797
Mva1269I GAATGC 1 cut(s) 1961
MvaI CCWGG 3 cut(s) 841, 1000, 2860
MvnI CGCG 2 cut(s) 80, 116
NaeI GCCGGC 1 cut(s) 312
NarI GGCGCC 1 cut(s) 285
NcoI CCATGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 2845
NgoMIV GCCGGC 1 cut(s) 310
NheI GCTAGC 1 cut(s) 1120
NmeAIII GCCGAG 2 cut(s) 125, 1150
NmuCI GTSAC 2 cut(s) 2450, 2830
NsiI ATGCAT 1 cut(s) 1989
NspV TTCGAA 2 cut(s) 38, 2345
PaeR7I CTCGAG 1 cut(s) 514
PagI TCATGA 1 cut(s) 1234
PciSI GCTCTTC 2 cut(s) 398, 2857
PcsI WCGNNNNNNNCGW 3 cut(s) 92, 192, 2824
PctI GAATGC 1 cut(s) 1961
PdiI GCCGGC 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 915
PflFI GACNNNGTC 1 cut(s) 1000
PfoI TCCNGGA 1 cut(s) 2657
PluTI GGCGCC 1 cut(s) 288
Ppu21I YACGTR 2 cut(s) 2075, 2570
PshAI GACNNNNGTC 2 cut(s) 236, 2448
PsiI TTATAA 2 cut(s) 2427, 2982
Psp124BI GAGCTC 4 cut(s) 24, 171, 532, 2373
Psp6I CCWGG 3 cut(s) 839, 998, 2858
PspEI GGTNACC 1 cut(s) 885
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 3 cut(s) 839, 998, 2858
PspOMI GGGCCC 2 cut(s) 51, 437
PstI CTGCAG 2 cut(s) 321, 1687
PsuI RGATCY 7 cut(s) 118, 189, 483, 1156, 1173, 1702, 2704
PsyI GACNNNGTC 1 cut(s) 1000
PvuII CAGCTG 2 cut(s) 548, 1972
RsaI GTAC 5 cut(s) 1166, 1668, 2568, 2572, 2778
RsaNI GTAC 5 cut(s) 1165, 1667, 2567, 2571, 2777
SacI GAGCTC 4 cut(s) 24, 171, 532, 2373
SacII CCGCGG 1 cut(s) 117
SapI GCTCTTC 2 cut(s) 398, 2857
ScaI AGTACT 1 cut(s) 1166
SduI GDGCHC 8 cut(s) 24, 55, 171, 410, 441, 532, 1713, 2373
SexAI ACCWGGT 1 cut(s) 998
SfaNI GCATC 9 cut(s) 703, 1014, 1129, 1463, 1573, 1651, 1761, 1996, 2102
SfcI CTRYAG 3 cut(s) 317, 1683, 2763
SfoI GGCGCC 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 514
Sfr303I CCGCGG 1 cut(s) 117
SfuI TTCGAA 2 cut(s) 38, 2345
SgrAI CRCCGGYG 1 cut(s) 310
SgrBI CCGCGG 1 cut(s) 117
SinI GGWCC 5 cut(s) 414, 420, 426, 1093, 2862
SlaI CTCGAG 1 cut(s) 514
SmaI CCCGGG 1 cut(s) 412
SmlI CTYRAG 6 cut(s) 514, 608, 665, 674, 1177, 2969
SmoI CTYRAG 6 cut(s) 514, 608, 665, 674, 1177, 2969
SnaBI TACGTA 1 cut(s) 2570
Sse9I AATT 9 cut(s) 567, 1088, 1620, 1761, 1797, 1938, 2314, 2741, 2983
SspDI GGCGCC 1 cut(s) 284
SspI AATATT 3 cut(s) 1200, 1258, 2039
SspMI CTAG 5 cut(s) 710, 1121, 1226, 1310, 2496
SstI GAGCTC 4 cut(s) 24, 171, 532, 2373
StyI CCWWGG 3 cut(s) 108, 2134, 2835
TaiI ACGT 6 cut(s) 869, 1365, 2077, 2457, 2572, 2830
TaqI TCGA 6 cut(s) 38, 398, 515, 1184, 1944, 2345
TasI AATT 9 cut(s) 567, 1088, 1620, 1761, 1797, 1938, 2314, 2741, 2983
TatI WGTACW 3 cut(s) 1164, 1666, 2776
TauI GCSGC 9 cut(s) 116, 203, 210, 290, 341, 344, 709, 739, 2384
TscAI CASTG 7 cut(s) 33, 594, 878, 1414, 1744, 2559, 2900
TseFI GTSAC 2 cut(s) 2450, 2830
Tsp45I GTSAC 2 cut(s) 2450, 2830
TspGWI ACGGA 2 cut(s) 2308, 2915
TspMI CCCGGG 1 cut(s) 410
TspRI CASTG 7 cut(s) 33, 594, 878, 1414, 1744, 2559, 2900
Tth111I GACNNNGTC 1 cut(s) 1000
Vha464I CTTAAG 2 cut(s) 665, 2969
VpaK11BI GGWCC 5 cut(s) 414, 420, 426, 1093, 2862
XagI CCTNNNNNAGG 1 cut(s) 1499
XapI RAATTY 2 cut(s) 1938, 2314
XbaI TCTAGA 1 cut(s) 2495
XcmI CCANNNNNNNNNTGG 3 cut(s) 878, 1282, 2116
XhoI CTCGAG 1 cut(s) 514
XmaI CCCGGG 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 685
XmnI GAANNNNTTC 1 cut(s) 915
XspI CTAG 5 cut(s) 710, 1121, 1226, 1310, 2496
ZrmI AGTACT 1 cut(s) 1166
Zsp2I ATGCAT 1 cut(s) 1989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.