Rh6DG461000

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013421
Physical Location & Seq
Forward (+)
63083863 .. 63088774
4912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG461000.1

Sequence Viewer

Length: 3000 bp
ATGGCTCATCTTTTCAGAGAGCTCTCACTGGGCCATTCGAAGAGGGGGGCCCACTCCACCACCACCACCGGCAGCGCCCCCACACTGACGATACCTACGAAGCCGACCACCATGGCCGCGGATCTCCCGTCCCCATTGGGCCAGCTCTCGGCCCAGCTCACCGATTCGGAGCTCCGGCTCACCGCCTACGAGATCTTCGTCGCCGCCTGCCGCACCTCCACCGGAAAAGCCCTGACTTTCGTCTCTTCTTCGCTCTCCGACTCGCCGACTCAGCAGCACACCAACGGCGCCGCCAGCTCCCCCAATGGCTCGCCGGCGCTGCAGAGATCGCTCACCTCCGCCGCCGCCAGCAAGATGAAGAAGGCATTGGGCCTCAAATCGCCGGGTTCTTCTTCCGGGTCGAAGAAGAGCCCCGGGTCCGGGTCCGGGTCGGGGCCCGGAAAGCCCAAGCGGGCTATGACGGTGGGGGAGCTGATGAGGATCCAAATGGGGATTTCTGAAGCTATGGACTCCAGAGTCAGGAGAGCTCTGCTTAGAATTTCAGCTGGACAGGTAGGACGGCGAATTGAGTCGGTTGTAGTCCCACTGGAGCTGTTACAGCAGCTCAAGTCGTCTGATTTTACTGACCCGCAAGAACACGAAGAATGGCAGAAAAGAACCCTTAAGATTCTTGAGGCTGGTCTACTTTTGCATCCCTTTGTGCCGCTAGACAAGTCCAATAGCACTGCACAGCGGCTACGACAGATTATTCATGGAGCGTTGGACAGGCCCTTTGAAACGGGGAGAAATAATGAGTCCATGCAGGTTCTTCGTAGTGCTGTTACGGCTCTTGCTTCCAGGTCATCTGATGGCTTATATGATACGTCCCACTGGGCAGATGGGTTACCATTGAATCTCCGCATTTATGAAATGCTTCTCCAAGCCGTGTTTGATAATCACGATGAGACATCTGTAATAGAGGAAGTGGACGAGCTAATGGAGCATATTAAGAAGACCTGGTCAATCCTCGGACTTAATCAGATGCTCCACAACCTTTGCTTTACGTGGGTTTTGTTTAACCGTTTTGTTGCTACCGGCCAAGTTGAATTGGACCTGTTGTATGCTGCTGATACGCAGCTAGCCGAGGTTACTAAAGATGCAAAGGCAACAAAGGATCCCGAGTACTGCAAGATCTTGAGTTCGACATTGACTTCAATATTGGGTTGGGCAGAGAAGAGACTCCTAGCCTATCATGACACGTTTGATAGCAGTAATATTGATACCATGCAGGCCATTGTTTCTCTGGGAGTAGTAGCAGCTAAGATTCTAGTTGAAGACATATCAAATGAGTATCGCAGGAGGAGAAAAAATGAAGTTGACGTTGCTCGCAACAGGATTGACACTTACATTAGATCATCATTACGCACTGCTTTTGCTCAGATGATGGAGAAGGCAGATTCCAGCAGGAGAGCATCAAGAAACCAGCCAAACCCCCTTCCCGTGCTGGCCATCCTTGCAAAGGATGTTGGTGAGCTGGCAGTTAAGGAGAAGCAGTTGTTCAGTCCAATACTAAAGATATGGCATCCTTTTGCTGCCGGTGTGGCTGTGGCAACTCTTCATGCTTGCTATGCGAATGAAATTAAACAGTTCATATCAGGTATAGCGGAGTTGACACCGGATGCTGTACAAGTTTTGAGAGCTGCAGATAAGCTGGAGAAAGATCTTGTGCTCATAGCAGTTGAGGATTCTGTAGACAGTGATGATGGTGGCAAGGCAATAATTCGCGAGATGCCTCCTTATGAGGCTGAAGCTGCAATTGCAAATCTGGTAAAAGTGTGGATCAAGACAAGAGTGGACAGACTTAAAGAATGGGTTGATAGGAATCTGCAACAAGAGGAGTGGAATCCACCAGCAAGTGAAGATGGATATGCTCCATCTGCTGTTGAAGTTTTGCGGATTTTCGATGAAACTCTGGTTGCATTCTTTCAGCTGCCAATACCAATGCATCCTGCATTGCTTCCTGACTTGATGGCTGGCCTTGATAGATGTCTTCAATATTACGTAACCAAGACAAAATCTGGATGTGGATCACGTAATACATTTGTTCCCACTATGCCTGCATTAACCAGATGCACTATGGAATCAAAGTTCCAAGGTTTTGGCAAAAAGAAAGAAAAAACGCCAACTTCTCAGAAGAGGAACTCTCAGGTTGCAACAGTCAATGGGGATAACTCTTTCGGGATACCACAGTTGCTTTGTCGCATAAACACATTGCAGAGAATCCGGAGTGAGTTAGAAGTTTTGGAGAAACGGATTGTTACTCATCTGAGGAATTCTGAATCTGCTCATGTAGAAGACTTTTCGAATGGATTGGGGAAGAAGTTTGAGCTCTCTCCTGCGGCTTGTGTGGAGGTAATCACACAACTTTGTGAGGCAGTAGCTTATAAAATGGTCTTCCATGACCTCAGTCACGTTCTGTGGGATGGTTTGTATGTTGGAGAACCATCATCTTCTAGAATAGAGCCTTTTCTTGACGAGCTGGAGAAGAACTTACTTATCGTATCAAATACAGTGCATGAAAGAGTACGTACACGCATTATTACTGACATAATGAGAGCTTCCTTTGATGGTTTCTTGCTGGTTTTGCTTGCCGGAGGCCCCTCTCGTGTATTCTCCCGGAAGGATTCTCAAATAATAGAAGATGACTTCAAGTCCCTTAAAGATCTGTTCTGGGCCAATGGGGATGGCTTGCCTTCTGAATTGATAGATAAGTTTACAACTACAGTTAGAGGTGTACTTCCCCTTTTCAGAACTGATACTGAGAGTCTCATAGAACGGTTTAGACGTGTGACCTTGGAGTCATATGGCTCTTCTGCCAGGTCCAGACTCCCTTTACCCCCTACTTCCGGGCAGTGGAATCCAACTGAACCAAACACGCTCCTCCGTGTGTTGTGCAATAGAAATGATGAAGCAGCTTCTAAGTTTCTTAAGAAGACTTATAATTTGCCCAAGAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

999

Amino Acids

110.77

Weight (kDa)

8.41

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 599 - 998 4.9e-173 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25800
fragaria_vesca FvH4_2g35590 FvH4_2g35590
malus_domestica MD08G1113600.v1.1 MD15G1093300.v1.1
prunus_persica Prupe.1G448100_v2.0.a1
pyrus_communis pycom08g09420 pycom15g08610
rosa_chinensis RchiOBHm_Chr6g0306221
rosa_laevigata RLG00000010812
rosa_multiflora Rmu_sc0003594.1_g000002
rosa_roxburghii Rroxscaffold_7G00161920
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460700 Rh6BG440700 Rh6CG474700 Rh6DG461000
rosa_wichuraiana Rw6G040130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2424, 2979
AasI GACNNNNNNGTC 2 cut(s) 515, 2836
Acc36I ACCTGC 1 cut(s) 793
AccB1I GGYRCC 1 cut(s) 287
AccI GTMKAC 2 cut(s) 682, 1731
AccII CGCG 2 cut(s) 119, 1764
AccIII TCCGGA 1 cut(s) 2262
AclWI GGATC 7 cut(s) 129, 475, 488, 1148, 1161, 1826, 2074
AcoI YGGCCR 3 cut(s) 114, 1075, 1485
AcsI RAATTY 2 cut(s) 537, 2311
AcuI CTGAAG 2 cut(s) 519, 1806
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 5 cut(s) 1163, 1665, 2565, 2569, 2775
AfiI CCNNNNNNNGG 9 cut(s) 148, 419, 420, 426, 432, 519, 1498, 2885, 2892
AflII CTTAAG 2 cut(s) 662, 2966
AflIII ACRYGT 2 cut(s) 1236, 2824
AgsI TTSAA 8 cut(s) 776, 892, 1085, 1194, 1313, 1925, 2033, 2689
AhdI GACNNNNNGTC 1 cut(s) 2689
AjiI CACGTC 1 cut(s) 2825
AjnI CCWGG 3 cut(s) 836, 995, 2855
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AloI GAACNNNNNNTCC 2 cut(s) 2111, 2143
Alw21I GWGCWC 5 cut(s) 24, 174, 529, 1710, 2370
Alw26I GTCTC 4 cut(s) 247, 938, 1210, 2810
AlwI GGATC 7 cut(s) 129, 475, 488, 1148, 1161, 1826, 2074
Ama87I CYCGRG 2 cut(s) 413, 1157
Aor13HI TCCGGA 1 cut(s) 2262
ApaI GGGCCC 2 cut(s) 52, 438
ApoI RAATTY 2 cut(s) 537, 2311
ArsI GACNNNNNNTTYG 4 cut(s) 755, 787, 2965, 2997
Asp700I GAANNNNTTC 1 cut(s) 912
AspLEI GCGC 3 cut(s) 77, 290, 319
AsuC2I CCSGG 9 cut(s) 384, 397, 414, 415, 421, 427, 438, 2656, 2887
AsuHPI GGTGA 4 cut(s) 151, 172, 325, 1520
AsuII TTCGAA 2 cut(s) 38, 2342
AsuNHI GCTAGC 1 cut(s) 1117
AvaI CYCGRG 2 cut(s) 413, 1157
AvaII GGWCC 4 cut(s) 417, 423, 1090, 2859
BaeGI GKGCMC 2 cut(s) 52, 438
BaeI ACNNNNGTAYC 2 cut(s) 2213, 2246
BalI TGGCCA 1 cut(s) 1487
BamHI GGATCC 2 cut(s) 480, 1153
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 7 cut(s) 24, 52, 174, 413, 438, 529, 2370
BauI CACGAG 1 cut(s) 2643
BbsI GAAGAC 6 cut(s) 998, 1320, 2021, 2340, 2425, 2978
Bbv12I GWGCWC 5 cut(s) 24, 174, 529, 1710, 2370
BceAI ACGGC 4 cut(s) 301, 575, 840, 908
BcgI CGANNNNNNTGC 2 cut(s) 791, 825
BciT130I CCWGG 3 cut(s) 838, 997, 2857
BciVI GTATCC 1 cut(s) 2214
BcnI CCSGG 9 cut(s) 384, 397, 414, 415, 421, 427, 438, 2656, 2887
BcoDI GTCTC 4 cut(s) 247, 938, 1210, 2810
BfaI CTAG 5 cut(s) 707, 1118, 1223, 1307, 2493
BfmI CTRYAG 4 cut(s) 320, 1680, 1728, 2760
BfoI RGCGCY 3 cut(s) 78, 291, 320
BfrI CTTAAG 2 cut(s) 662, 2966
BfuAI ACCTGC 1 cut(s) 793
BfuI GTATCC 1 cut(s) 2214
BglI GCCNNNNNGGC 1 cut(s) 1580
BglII AGATCT 4 cut(s) 192, 1170, 1699, 2701
BmcAI AGTACT 1 cut(s) 1163
Bme18I GGWCC 4 cut(s) 417, 423, 1090, 2859
BmeRI GACNNNNNGTC 1 cut(s) 2689
BmeT110I CYCGRG 2 cut(s) 413, 1157
BmgBI CACGTC 1 cut(s) 2825
BmrI ACTGGG 2 cut(s) 38, 880
BmsI GCATC 9 cut(s) 700, 1011, 1126, 1460, 1570, 1648, 1758, 1993, 2099
BmtI GCTAGC 1 cut(s) 1121
BmuI ACTGGG 2 cut(s) 38, 880
BoxI GACNNNNGTC 2 cut(s) 239, 2445
BpiI GAAGAC 6 cut(s) 998, 1320, 2021, 2340, 2425, 2978
BplI GAGNNNNNCTC 2 cut(s) 2167, 2199
BpmI CTGGAG 4 cut(s) 496, 608, 1712, 2540
Bpu14I TTCGAA 2 cut(s) 38, 2342
BpuEI CTTGAG 3 cut(s) 590, 692, 1195
BpuMI CCSGG 9 cut(s) 384, 397, 414, 415, 421, 427, 438, 2656, 2887
BsaAI YACGTR 4 cut(s) 1044, 2041, 2072, 2567
BsaBI GATNNNNATC 3 cut(s) 479, 1860, 2065
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 8 cut(s) 111, 117, 412, 413, 1006, 1122, 2131, 2832
BsaWI WCCGGW 3 cut(s) 221, 1654, 2262
BsaXI ACNNNNNCTCC 2 cut(s) 1517, 1547
Bsc4I CCNNNNNNNGG 9 cut(s) 148, 419, 420, 426, 432, 519, 1498, 2885, 2892
Bse118I RCCGGY 4 cut(s) 68, 313, 1073, 1574
Bse1I ACTGG 3 cut(s) 33, 591, 875
Bse3DI GCAATG 2 cut(s) 1991, 2249
Bse8I GATNNNNATC 3 cut(s) 479, 1860, 2065
BseAI TCCGGA 1 cut(s) 2262
BseBI CCWGG 3 cut(s) 838, 997, 2857
BseDI CCNNGG 8 cut(s) 111, 117, 412, 413, 1006, 1122, 2131, 2832
BseGI GGATG 9 cut(s) 691, 1488, 1507, 1561, 1663, 1984, 2066, 2467, 2728
BseJI GATNNNNATC 3 cut(s) 479, 1860, 2065
BseLI CCNNNNNNNGG 9 cut(s) 148, 419, 420, 426, 432, 519, 1498, 2885, 2892
BseMI GCAATG 2 cut(s) 1991, 2249
BseMII CTCAG 7 cut(s) 284, 1430, 2183, 2198, 2297, 2458, 2790
BseNI ACTGG 3 cut(s) 33, 591, 875
BseRI GAGGAG 3 cut(s) 1354, 1889, 2909
BseSI GKGCMC 2 cut(s) 52, 438
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 711
Bsh1236I CGCG 2 cut(s) 119, 1764
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 5 cut(s) 24, 174, 529, 1710, 2370
BsiHKCI CYCGRG 2 cut(s) 413, 1157
BslFI GGGAC 4 cut(s) 115, 566, 850, 2677
BslI CCNNNNNNNGG 9 cut(s) 148, 419, 420, 426, 432, 519, 1498, 2885, 2892
BsmAI GTCTC 4 cut(s) 247, 938, 1210, 2810
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 4 cut(s) 115, 566, 850, 2677
BsmI GAATGC 1 cut(s) 1958
BsoBI CYCGRG 2 cut(s) 413, 1157
Bsp119I TTCGAA 2 cut(s) 38, 2342
Bsp120I GGGCCC 2 cut(s) 48, 434
Bsp1286I GDGCHC 8 cut(s) 24, 52, 174, 413, 438, 529, 1710, 2370
Bsp13I TCCGGA 1 cut(s) 2262
Bsp1407I TGTACA 1 cut(s) 1663
Bsp19I CCATGG 1 cut(s) 111
Bsp68I TCGCGA 1 cut(s) 1764
BspCNI CTCAG 7 cut(s) 283, 1429, 2182, 2197, 2298, 2457, 2791
BspEI TCCGGA 1 cut(s) 2262
BspFNI CGCG 2 cut(s) 119, 1764
BspHI TCATGA 1 cut(s) 1231
BspMAI CTGCAG 2 cut(s) 324, 1684
BspMI ACCTGC 1 cut(s) 793
BspOI GCTAGC 1 cut(s) 1121
BspPI GGATC 7 cut(s) 129, 475, 488, 1148, 1161, 1826, 2074
BspQI GCTCTTC 2 cut(s) 401, 2854
BspT104I TTCGAA 2 cut(s) 38, 2342
BspT107I GGYRCC 1 cut(s) 287
BspTI CTTAAG 2 cut(s) 662, 2966
BsrDI GCAATG 2 cut(s) 1991, 2249
BsrFI RCCGGY 4 cut(s) 68, 313, 1073, 1574
BsrGI TGTACA 1 cut(s) 1663
BsrI ACTGG 3 cut(s) 33, 591, 875
BssAI RCCGGY 4 cut(s) 68, 313, 1073, 1574
BssECI CCNNGG 8 cut(s) 111, 117, 412, 413, 1006, 1122, 2131, 2832
BssNI GRCGYC 1 cut(s) 288
BssSI CACGAG 1 cut(s) 2643
BssT1I CCWWGG 3 cut(s) 111, 2131, 2832
Bst2BI CACGAG 1 cut(s) 2643
Bst2UI CCWGG 3 cut(s) 838, 997, 2857
Bst6I CTCTTC 7 cut(s) 35, 250, 401, 1208, 1599, 2168, 2854
BstACI GRCGYC 1 cut(s) 288
BstAFI CTTAAG 2 cut(s) 662, 2966
BstAUI TGTACA 1 cut(s) 1663
BstBAI YACGTR 4 cut(s) 1044, 2041, 2072, 2567
BstBI TTCGAA 2 cut(s) 38, 2342
BstDSI CCRYGG 2 cut(s) 111, 117
BstEII GGTNACC 1 cut(s) 882
BstENI CCTNNNNNAGG 1 cut(s) 1496
BstF5I GGATG 9 cut(s) 691, 1488, 1507, 1561, 1663, 1984, 2066, 2467, 2728
BstFNI CGCG 2 cut(s) 119, 1764
BstH2I RGCGCY 3 cut(s) 78, 291, 320
BstHHI GCGC 3 cut(s) 77, 290, 319
BstMAI GTCTC 4 cut(s) 247, 938, 1210, 2810
BstNI CCWGG 3 cut(s) 838, 997, 2857
BstPAI GACNNNNGTC 2 cut(s) 239, 2445
BstPI GGTNACC 1 cut(s) 882
BstSFI CTRYAG 4 cut(s) 320, 1680, 1728, 2760
BstSLI GKGCMC 2 cut(s) 52, 438
BstSNI TACGTA 2 cut(s) 2041, 2567
BstUI CGCG 2 cut(s) 119, 1764
BstV2I GAAGAC 6 cut(s) 998, 1320, 2021, 2340, 2425, 2978
BstX2I RGATCY 7 cut(s) 121, 192, 480, 1153, 1170, 1699, 2701
BstXI CCANNNNNNTGG 1 cut(s) 2138
BstYI RGATCY 7 cut(s) 121, 192, 480, 1153, 1170, 1699, 2701
BsuI GTATCC 1 cut(s) 2214
BtgI CCRYGG 2 cut(s) 111, 117
BtrI CACGTC 1 cut(s) 2825
BtsCI GGATG 9 cut(s) 691, 1488, 1507, 1561, 1663, 1984, 2066, 2467, 2728
BtsI GCAGTG 3 cut(s) 723, 1404, 2897
BtsIMutI CAGTG 9 cut(s) 26, 83, 584, 723, 868, 1404, 1741, 2556, 2897
BtuMI TCGCGA 1 cut(s) 1764
BveI ACCTGC 1 cut(s) 793
CciI TCATGA 1 cut(s) 1231
CfoI GCGC 3 cut(s) 77, 290, 319
Cfr10I RCCGGY 4 cut(s) 68, 313, 1073, 1574
Cfr42I CCGCGG 1 cut(s) 120
Cfr9I CCCGGG 1 cut(s) 413
CsiI ACCWGGT 1 cut(s) 995
Csp6I GTAC 5 cut(s) 1162, 1664, 2564, 2568, 2774
CspCI CAANNNNNGTGG 4 cut(s) 1016, 1051, 1859, 1894
CviAII CATG 9 cut(s) 112, 752, 799, 1232, 1264, 1598, 2327, 2438, 2555
CviQI GTAC 5 cut(s) 1162, 1664, 2564, 2568, 2774
DinI GGCGCC 1 cut(s) 289
DrdI GACNNNNNNGTC 2 cut(s) 515, 2836
DriI GACNNNNNGTC 1 cut(s) 2689
DseDI GACNNNNNNGTC 2 cut(s) 515, 2836
EaeI YGGCCR 3 cut(s) 114, 1075, 1485
Eam1104I CTCTTC 7 cut(s) 35, 250, 401, 1208, 1599, 2168, 2854
Eam1105I GACNNNNNGTC 1 cut(s) 2689
EarI CTCTTC 7 cut(s) 35, 250, 401, 1208, 1599, 2168, 2854
EciI GGCGGA 1 cut(s) 328
Ecl136II GAGCTC 4 cut(s) 22, 172, 527, 2368
Eco105I TACGTA 2 cut(s) 2041, 2567
Eco130I CCWWGG 3 cut(s) 111, 2131, 2832
Eco24I GRGCYC 7 cut(s) 24, 52, 174, 413, 438, 529, 2370
Eco47I GGWCC 4 cut(s) 417, 423, 1090, 2859
Eco53kI GAGCTC 4 cut(s) 22, 172, 527, 2368
Eco57I CTGAAG 2 cut(s) 519, 1806
Eco88I CYCGRG 2 cut(s) 413, 1157
Eco91I GGTNACC 1 cut(s) 882
EcoICRI GAGCTC 4 cut(s) 22, 172, 527, 2368
EcoNI CCTNNNNNAGG 1 cut(s) 1496
EcoO109I RGGNCCY 4 cut(s) 48, 434, 768, 2636
EcoO65I GGTNACC 1 cut(s) 882
EcoRI GAATTC 1 cut(s) 2311
EcoRII CCWGG 3 cut(s) 836, 995, 2855
EcoT14I CCWWGG 3 cut(s) 111, 2131, 2832
EcoT22I ATGCAT 1 cut(s) 1986
EcoT38I GRGCYC 7 cut(s) 24, 52, 174, 413, 438, 529, 2370
EgeI GGCGCC 1 cut(s) 289
EheI GGCGCC 1 cut(s) 289
ErhI CCWWGG 3 cut(s) 111, 2131, 2832
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 9 cut(s) 115, 755, 802, 1235, 1267, 1601, 2330, 2441, 2558
FaqI GGGAC 4 cut(s) 115, 566, 850, 2677
FatI CATG 9 cut(s) 111, 751, 798, 1231, 1263, 1597, 2326, 2437, 2554
FauI CCCGC 2 cut(s) 444, 636
FauNDI CATATG 1 cut(s) 2842
FblI GTMKAC 2 cut(s) 682, 1731
FokI GGATG 9 cut(s) 678, 1475, 1514, 1548, 1670, 1971, 2073, 2474, 2735
FriOI GRGCYC 7 cut(s) 24, 52, 174, 413, 438, 529, 2370
FspBI CTAG 5 cut(s) 707, 1118, 1223, 1307, 2493
GlaI GCGC 3 cut(s) 76, 289, 318
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 4 cut(s) 496, 608, 1712, 2540
HaeII RGCGCY 3 cut(s) 78, 291, 320
HhaI GCGC 3 cut(s) 77, 290, 319
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 9 cut(s) 115, 755, 802, 1235, 1267, 1601, 2330, 2441, 2558
Hin6I GCGC 3 cut(s) 75, 288, 317
HinP1I GCGC 3 cut(s) 75, 288, 317
HincII GTYRAC 2 cut(s) 1357, 1650
HindII GTYRAC 2 cut(s) 1357, 1650
HphI GGTGA 4 cut(s) 151, 172, 325, 1520
Hpy166II GTNNAC 9 cut(s) 683, 967, 1357, 1650, 1732, 1834, 2570, 2754, 2774
Hpy8I GTNNAC 9 cut(s) 683, 967, 1357, 1650, 1732, 1834, 2570, 2754, 2774
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 5 cut(s) 355, 1423, 1484, 2653, 2742
HpyCH4IV ACGT 9 cut(s) 863, 1043, 1238, 1359, 2040, 2071, 2451, 2566, 2824
HpySE526I ACGT 9 cut(s) 863, 1043, 1238, 1359, 2040, 2071, 2451, 2566, 2824
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 9 cut(s) 115, 755, 802, 1235, 1267, 1601, 2330, 2441, 2558
HspAI GCGC 3 cut(s) 75, 288, 317
KasI GGCGCC 1 cut(s) 287
Kpn2I TCCGGA 1 cut(s) 2262
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
KspI CCGCGG 1 cut(s) 120
LguI GCTCTTC 2 cut(s) 401, 2854
LweI GCATC 9 cut(s) 700, 1011, 1126, 1460, 1570, 1648, 1758, 1993, 2099
MabI ACCWGGT 1 cut(s) 995
MaeI CTAG 5 cut(s) 707, 1118, 1223, 1307, 2493
MaeII ACGT 9 cut(s) 863, 1043, 1238, 1359, 2040, 2071, 2451, 2566, 2824
MaeIII GTNAC 8 cut(s) 594, 820, 882, 1126, 2041, 2296, 2447, 2827
MfeI CAATTG 1 cut(s) 1794
MflI RGATCY 7 cut(s) 121, 192, 480, 1153, 1170, 1699, 2701
MhlI GDGCHC 8 cut(s) 24, 52, 174, 413, 438, 529, 1710, 2370
MlsI TGGCCA 1 cut(s) 1487
MluCI AATT 9 cut(s) 537, 564, 1085, 1617, 1758, 1794, 2311, 2738, 2980
MluNI TGGCCA 1 cut(s) 1487
Mly113I GGCGCC 1 cut(s) 288
MmeI TCCRAC 4 cut(s) 282, 741, 2455, 2924
Mox20I TGGCCA 1 cut(s) 1487
Mph1103I ATGCAT 1 cut(s) 1986
MreI CGCCGGCG 1 cut(s) 313
MroI TCCGGA 1 cut(s) 2262
MroNI GCCGGC 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 912
MscI TGGCCA 1 cut(s) 1487
Msp20I TGGCCA 1 cut(s) 1487
MspA1I CMGCKG 4 cut(s) 119, 545, 733, 1969
MspCI CTTAAG 2 cut(s) 662, 2966
MunI CAATTG 1 cut(s) 1794
Mva1269I GAATGC 1 cut(s) 1958
MvaI CCWGG 3 cut(s) 838, 997, 2857
MvnI CGCG 2 cut(s) 119, 1764
NaeI GCCGGC 1 cut(s) 315
NarI GGCGCC 1 cut(s) 288
NciI CCSGG 9 cut(s) 384, 397, 414, 415, 421, 427, 438, 2656, 2887
NcoI CCATGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 2842
NgoMIV GCCGGC 1 cut(s) 313
NheI GCTAGC 1 cut(s) 1117
NlaIII CATG 9 cut(s) 115, 755, 802, 1235, 1267, 1601, 2330, 2441, 2558
NmeAIII GCCGAG 2 cut(s) 128, 1147
NmuCI GTSAC 2 cut(s) 2447, 2827
NruI TCGCGA 1 cut(s) 1764
NsiI ATGCAT 1 cut(s) 1986
NspV TTCGAA 2 cut(s) 38, 2342
PagI TCATGA 1 cut(s) 1231
PciSI GCTCTTC 2 cut(s) 401, 2854
PcsI WCGNNNNNNNCGW 3 cut(s) 95, 195, 2821
PctI GAATGC 1 cut(s) 1958
PdiI GCCGGC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 912
PflFI GACNNNGTC 1 cut(s) 997
PfoI TCCNGGA 1 cut(s) 2654
PluTI GGCGCC 1 cut(s) 291
Ppu21I YACGTR 4 cut(s) 1044, 2041, 2072, 2567
PshAI GACNNNNGTC 2 cut(s) 239, 2445
PsiI TTATAA 2 cut(s) 2424, 2979
Psp124BI GAGCTC 4 cut(s) 24, 174, 529, 2370
Psp6I CCWGG 3 cut(s) 836, 995, 2855
PspEI GGTNACC 1 cut(s) 882
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 3 cut(s) 836, 995, 2855
PspOMI GGGCCC 2 cut(s) 48, 434
PstI CTGCAG 2 cut(s) 324, 1684
PsuI RGATCY 7 cut(s) 121, 192, 480, 1153, 1170, 1699, 2701
PsyI GACNNNGTC 1 cut(s) 997
PvuII CAGCTG 2 cut(s) 545, 1969
RruI TCGCGA 1 cut(s) 1764
RsaI GTAC 5 cut(s) 1163, 1665, 2565, 2569, 2775
RsaNI GTAC 5 cut(s) 1162, 1664, 2564, 2568, 2774
SacI GAGCTC 4 cut(s) 24, 174, 529, 2370
SacII CCGCGG 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 401, 2854
ScaI AGTACT 1 cut(s) 1163
SduI GDGCHC 8 cut(s) 24, 52, 174, 413, 438, 529, 1710, 2370
SexAI ACCWGGT 1 cut(s) 995
SfaNI GCATC 9 cut(s) 700, 1011, 1126, 1460, 1570, 1648, 1758, 1993, 2099
SfcI CTRYAG 4 cut(s) 320, 1680, 1728, 2760
SfoI GGCGCC 1 cut(s) 289
Sfr303I CCGCGG 1 cut(s) 120
SfuI TTCGAA 2 cut(s) 38, 2342
SgrAI CRCCGGYG 1 cut(s) 313
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 4 cut(s) 417, 423, 1090, 2859
SmaI CCCGGG 1 cut(s) 415
SmlI CTYRAG 5 cut(s) 605, 662, 671, 1174, 2966
SmoI CTYRAG 5 cut(s) 605, 662, 671, 1174, 2966
SnaBI TACGTA 2 cut(s) 2041, 2567
Sse9I AATT 9 cut(s) 537, 564, 1085, 1617, 1758, 1794, 2311, 2738, 2980
SspDI GGCGCC 1 cut(s) 287
SspI AATATT 3 cut(s) 1197, 1255, 2036
SspMI CTAG 5 cut(s) 707, 1118, 1223, 1307, 2493
SstI GAGCTC 4 cut(s) 24, 174, 529, 2370
StyI CCWWGG 3 cut(s) 111, 2131, 2832
TaiI ACGT 9 cut(s) 866, 1046, 1241, 1362, 2043, 2074, 2454, 2569, 2827
TaqI TCGA 5 cut(s) 38, 401, 1181, 1941, 2342
TasI AATT 9 cut(s) 537, 564, 1085, 1617, 1758, 1794, 2311, 2738, 2980
TatI WGTACW 3 cut(s) 1161, 1663, 2773
TauI GCSGC 9 cut(s) 119, 206, 213, 293, 344, 347, 706, 736, 2381
TscAI CASTG 9 cut(s) 33, 90, 591, 730, 875, 1411, 1741, 2556, 2897
TseFI GTSAC 2 cut(s) 2447, 2827
Tsp45I GTSAC 2 cut(s) 2447, 2827
TspGWI ACGGA 2 cut(s) 2305, 2912
TspMI CCCGGG 1 cut(s) 413
TspRI CASTG 9 cut(s) 33, 90, 591, 730, 875, 1411, 1741, 2556, 2897
Tth111I GACNNNGTC 1 cut(s) 997
Vha464I CTTAAG 2 cut(s) 662, 2966
VpaK11BI GGWCC 4 cut(s) 417, 423, 1090, 2859
XagI CCTNNNNNAGG 1 cut(s) 1496
XapI RAATTY 2 cut(s) 537, 2311
XbaI TCTAGA 1 cut(s) 2492
XcmI CCANNNNNNNNNTGG 3 cut(s) 875, 1279, 2113
XmaI CCCGGG 1 cut(s) 413
XmiI GTMKAC 2 cut(s) 682, 1731
XmnI GAANNNNTTC 1 cut(s) 912
XspI CTAG 5 cut(s) 707, 1118, 1223, 1307, 2493
ZrmI AGTACT 1 cut(s) 1163
Zsp2I ATGCAT 1 cut(s) 1986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.