RchiOBHm_Chr6g0306221

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013421
Physical Location & Seq
Forward (+)
65000909 .. 65005467
4559 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27524

Sequence Viewer

Length: 2934 bp
ATGGCTCATCTTTTCAGGGAGCTCTCACTGGGCCATTCGAAGAGAGGGGCCCACTCCACCACCGGCAGCGCCCCCGCGCTGACGATACCTACGAAGCCGACCACCATGGCCACGGATCTCCCGTCCCCATTGGGCCAGCTCTCGGCCCAGCTCACCGATTCGGAGCTCCGGCTCACCGCCTACGAGATCTTCGTCGCCGCCTGCCGCACCTCAACCGGCAAAGCCCTGACTTTCGTCTCTTCTTCGCTCTCCGACTCGCCGACTCAGCAGCACACCAACGGCGCCGCCAGCTCCCCCAATGGCTCGCCGGCGCTGCAGAGATCGCTCACCTCCGCCGCCGCCAGCAAGATGAAGAAGGCATTGGGCCTCAAATCGCCGGGTTCTTCTTCCGGGTCGAAGAAGAGCCCCGGGTCCGGGTCCGGGTCGGGGCCCGGAAAGCCCAAGCGGGCTATGACGGTGGGGGAGCTGATGAGGATCCAAATGGGGATTTCTGAAGCTATGGACTCCAGAGTCAGGAGAGCTCTGCTTAGAATTTCAGCTGGACAGGTAGGACGGCGAATTGAGTCGGTTGTAGTCCCACTGGAGCTGTTACAGCAGCTCAAGTCGTCTGATTTTACTGACCCGCAGGAACACGAAGAATGGCAGAAAAGAACCCTTAAGATTCTTGAGGCTGGTCTACTTTTGCATCCCTTTGTGCCGCTAGACAAGTCCAATAGCGCTGCACAGCGGCTACGACAGATTATTCATGGAGCGTTGGACAGGCCCTTTGAAACGGGGAGAAATAATGAGTCCATGCAGGTTCTTCGTAGTGCTGTTACGGCCCTTGCTTCCAGGTCATCTGATGGCTTATATGATACGTCCCACTGGGCAGATGGGTTACCATTGAATCTCCGCATTTATGAAATGCTTCTCCAAGCCGTGTTTGATAATCACGATGAGACATCTGTAATAGAGGAAGTGGACGAGCTAATGGAGCATATTAAGAAGACCTGGTCAATCCTCGGACTTAATCAGATGCTCCACAACCTTTGCTTTACGTGGGTTTTGTTTAACCGTTTTGTTGCTACCGGCCAAGTTGAATTGGACCTGTTGTATGCTGCTGATACGCAGCTAGCCGAGGTTGCTAAAGATGCAAAGGCAACAAAGGATCCCGAGTACTGCAAGATCTTGAGTTCGACATTGACTTCAATATTGGGTTGGGCAGAGAAGAGACTCCTAGCCTATCATGACACTTTTGATAGCAGTAATATTGATACCATGCAGGCCATTGTTTCTCTGGGAGTAGTAGCAGCTAAGATTCTAGTTGAAGACATATCAAATGAGTATCGCAGGAGGAGAAAAAATGAAGTTGACATGATGGAGAAGGCAGATTCCAGCAGGAGAGCATCAAGAAACCAGCCAAACCCCCTTCCCGTGCTGGCCATCCTTGCAAAGGATGTTGGTGAGCTGGCAGTTAAGGAGAAGCAGTTGTTCAGTCCAATACTAAAGATATGGCATCCTTTTGCTGCCGGTGTGGCTGTGGCAACTCTTCATGCTTGCTATGCGAATGAAATTAAACAGTTCATATCGGGTATAGCGGAGTTGACACCGGATGCTGTACAAGTTTTGAGAGCTGCAGATAAGCTGGAGAAAGATCTTGTGCTCATAGCAGTTGAGGATTCTGTGGACAGTGATGATGGTGGCAAGGCAATAATTCGTGAGATGCCTCCTTATGAGGCTGAAGCTGCAATTGCAAATCTGGTAAAAGTGTGGATCAAGACAAGAGTGGACAGACTTAAAGAATGGGTTGATAGGAATCTGCAACAAGAGGAGTGGAATCCACCAGCAAGTGAAGATGGATATGCTCCATCTGCTGTTGAAGTTTTGCGAATTTTCGATGAAACTCTGGTTGCATTCTTTCAGCTGCCAATACCAATGCATCCTGCATTACTTCCTGACTTGATGGCTGGCCTTGATAGATGTCTTCAATATTACGTAACCAAGACAAAATCTGGATGTGGATCACGTAATACATTTGTTCCCACTATGCCTGCATTAACCAGATGCACTATGGAATCAAAGTTCCAAGGTTTTGGCAAAAAGAAAGAAAAAACGCCAACTTCTCAGAAGAGGAACTCTCAGGTTGCAACAGTCAATGGGGATAACTCTTTCGGGATACCACAGTTGCTTTGTCGCATAAACACATTGCAGAGAATCCGGAGTGAGTTAGAAGTTTTGGAGAAACGGATTGTTACTCATCTGAGGAATTCTGAATCTGCTCATGTAGAAGACTTTTCGAATGGATTGGGGAAGAAGTTTGAGCTCTCTCCTGCGGCTTGTGTGGAGGTAATCACACAACTTTGTGAGGCAGTAGCTTATAAAATGGTCTTCCATGACCTCAGTCACGTTCTGTGGGATGGTTTGTATGTTGGAGAACCATCATCTTCTAGAATAGAGCCTTTTCTTGACGAGCTGGAGAAGAACTTACTTATCGTATCAAATACAGTGCATGAAAGAGTACGTACACGCATTATTACTGACATAATGAGAGCTTCCTTTGATGGTTTCTTGCTGGTTTTGCTTGCCGGAGGCCCCTCTCGTGTATTCTCCCGGAAGGATTCTCAAATAATAGAAGATGACTTCAAGTCCCTTAAAGATCTGTTCTGGGCCAATGGGGATGGCTTGCCTTCTGAATTGATAGATAAGTTTACAACTACAGTTAGAGGTGTACTTCCCCTTTTCAGAACTGATACTGAGAGTCTCATAGAACGGTTTAGACGTGTGACCTTGGAGTCATATGGCTCTTCTGCCAGGTCCAGACTCCCTTTACCCCCTACTTCCGGGCAGTGGAATCCAACTGAGCCAAACACGCTCCTCCGTGTGTTGTGCAATAGAAATGATGAAGCAGCTTCTAAGTTTCTTAAGAAGACTTATAATTTGCCCAAGAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

977

Amino Acids

108.19

Weight (kDa)

7.9

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 577 - 976 4.7e-173 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25800
fragaria_vesca FvH4_2g35590 FvH4_2g35590
malus_domestica MD08G1113600.v1.1 MD15G1093300.v1.1
prunus_persica Prupe.1G448100_v2.0.a1
pyrus_communis pycom08g09420 pycom15g08610
rosa_chinensis RchiOBHm_Chr6g0306221
rosa_laevigata RLG00000010812
rosa_multiflora Rmu_sc0003594.1_g000002
rosa_roxburghii Rroxscaffold_7G00161920
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460700 Rh6BG440700 Rh6CG474700 Rh6DG461000
rosa_wichuraiana Rw6G040130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2358, 2913
AasI GACNNNNNNGTC 2 cut(s) 509, 2770
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 676
AccII CGCG 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 2196
AclWI GGATC 7 cut(s) 123, 469, 482, 1142, 1155, 1760, 2008
AcoI YGGCCR 3 cut(s) 108, 1069, 1419
AcsI RAATTY 3 cut(s) 531, 1869, 2245
AcuI CTGAAG 2 cut(s) 513, 1740
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 5 cut(s) 1157, 1599, 2499, 2503, 2709
AfeI AGCGCT 1 cut(s) 718
AfiI CCNNNNNNNGG 9 cut(s) 142, 413, 414, 420, 426, 513, 1432, 2819, 2826
AflII CTTAAG 2 cut(s) 656, 2900
AflIII ACRYGT 1 cut(s) 2758
AgsI TTSAA 8 cut(s) 770, 886, 1079, 1188, 1307, 1859, 1967, 2623
AhdI GACNNNNNGTC 1 cut(s) 2623
AjiI CACGTC 1 cut(s) 2759
AjnI CCWGG 3 cut(s) 830, 989, 2789
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AloI GAACNNNNNNTCC 2 cut(s) 2045, 2077
Alw21I GWGCWC 5 cut(s) 24, 168, 523, 1644, 2304
Alw26I GTCTC 4 cut(s) 241, 932, 1204, 2744
AlwI GGATC 7 cut(s) 123, 469, 482, 1142, 1155, 1760, 2008
Ama87I CYCGRG 2 cut(s) 407, 1151
Aor13HI TCCGGA 1 cut(s) 2196
Aor51HI AGCGCT 1 cut(s) 718
ApaI GGGCCC 2 cut(s) 52, 432
ApoI RAATTY 3 cut(s) 531, 1869, 2245
ArsI GACNNNNNNTTYG 4 cut(s) 749, 781, 2899, 2931
Asp700I GAANNNNTTC 1 cut(s) 906
AspLEI GCGC 5 cut(s) 71, 79, 284, 313, 719
AsuC2I CCSGG 9 cut(s) 378, 391, 408, 409, 415, 421, 432, 2590, 2821
AsuHPI GGTGA 4 cut(s) 145, 166, 319, 1454
AsuII TTCGAA 2 cut(s) 38, 2276
AsuNHI GCTAGC 1 cut(s) 1111
AvaI CYCGRG 2 cut(s) 407, 1151
AvaII GGWCC 4 cut(s) 411, 417, 1084, 2793
BaeGI GKGCMC 2 cut(s) 52, 432
BaeI ACNNNNGTAYC 2 cut(s) 2147, 2180
BalI TGGCCA 2 cut(s) 110, 1421
BamHI GGATCC 2 cut(s) 474, 1147
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 7 cut(s) 24, 52, 168, 407, 432, 523, 2304
BauI CACGAG 1 cut(s) 2577
BbsI GAAGAC 6 cut(s) 992, 1314, 1955, 2274, 2359, 2912
Bbv12I GWGCWC 5 cut(s) 24, 168, 523, 1644, 2304
BceAI ACGGC 4 cut(s) 295, 569, 834, 902
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BciT130I CCWGG 3 cut(s) 832, 991, 2791
BciVI GTATCC 1 cut(s) 2148
BcnI CCSGG 9 cut(s) 378, 391, 408, 409, 415, 421, 432, 2590, 2821
BcoDI GTCTC 4 cut(s) 241, 932, 1204, 2744
BfaI CTAG 5 cut(s) 701, 1112, 1217, 1301, 2427
BfmI CTRYAG 3 cut(s) 314, 1614, 2694
BfoI RGCGCY 4 cut(s) 72, 285, 314, 720
BfrI CTTAAG 2 cut(s) 656, 2900
BfuAI ACCTGC 1 cut(s) 787
BfuI GTATCC 1 cut(s) 2148
BglI GCCNNNNNGGC 1 cut(s) 1514
BglII AGATCT 4 cut(s) 186, 1164, 1633, 2635
BmcAI AGTACT 1 cut(s) 1157
Bme18I GGWCC 4 cut(s) 411, 417, 1084, 2793
BmeRI GACNNNNNGTC 1 cut(s) 2623
BmeT110I CYCGRG 2 cut(s) 407, 1151
BmgBI CACGTC 1 cut(s) 2759
BmrI ACTGGG 2 cut(s) 38, 874
BmsI GCATC 9 cut(s) 694, 1005, 1120, 1394, 1504, 1582, 1692, 1927, 2033
BmtI GCTAGC 1 cut(s) 1115
BmuI ACTGGG 2 cut(s) 38, 874
BoxI GACNNNNGTC 2 cut(s) 233, 2379
BpiI GAAGAC 6 cut(s) 992, 1314, 1955, 2274, 2359, 2912
BplI GAGNNNNNCTC 2 cut(s) 2101, 2133
BpmI CTGGAG 4 cut(s) 490, 602, 1646, 2474
Bpu14I TTCGAA 2 cut(s) 38, 2276
BpuEI CTTGAG 3 cut(s) 584, 686, 1189
BpuMI CCSGG 9 cut(s) 378, 391, 408, 409, 415, 421, 432, 2590, 2821
BsaAI YACGTR 4 cut(s) 1038, 1975, 2006, 2501
BsaBI GATNNNNATC 3 cut(s) 473, 1794, 1999
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 8 cut(s) 105, 111, 406, 407, 1000, 1116, 2065, 2766
BsaWI WCCGGW 2 cut(s) 1588, 2196
BsaXI ACNNNNNCTCC 2 cut(s) 1451, 1481
Bsc4I CCNNNNNNNGG 9 cut(s) 142, 413, 414, 420, 426, 513, 1432, 2819, 2826
Bse118I RCCGGY 5 cut(s) 62, 215, 307, 1067, 1508
Bse1I ACTGG 3 cut(s) 33, 585, 869
Bse3DI GCAATG 1 cut(s) 2183
Bse8I GATNNNNATC 3 cut(s) 473, 1794, 1999
BseAI TCCGGA 1 cut(s) 2196
BseBI CCWGG 3 cut(s) 832, 991, 2791
BseDI CCNNGG 8 cut(s) 105, 111, 406, 407, 1000, 1116, 2065, 2766
BseGI GGATG 9 cut(s) 685, 1422, 1441, 1495, 1597, 1918, 2000, 2401, 2662
BseJI GATNNNNATC 3 cut(s) 473, 1794, 1999
BseLI CCNNNNNNNGG 9 cut(s) 142, 413, 414, 420, 426, 513, 1432, 2819, 2826
BseMI GCAATG 1 cut(s) 2183
BseMII CTCAG 7 cut(s) 278, 2117, 2132, 2231, 2392, 2724, 2829
BseNI ACTGG 3 cut(s) 33, 585, 869
BseRI GAGGAG 3 cut(s) 1348, 1823, 2843
BseSI GKGCMC 2 cut(s) 52, 432
BseYI CCCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 705
Bsh1236I CGCG 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 5 cut(s) 24, 168, 523, 1644, 2304
BsiHKCI CYCGRG 2 cut(s) 407, 1151
BslFI GGGAC 4 cut(s) 109, 560, 844, 2611
BslI CCNNNNNNNGG 9 cut(s) 142, 413, 414, 420, 426, 513, 1432, 2819, 2826
BsmAI GTCTC 4 cut(s) 241, 932, 1204, 2744
BsmBI CGTCTC 1 cut(s) 241
BsmFI GGGAC 4 cut(s) 109, 560, 844, 2611
BsmI GAATGC 1 cut(s) 1892
BsoBI CYCGRG 2 cut(s) 407, 1151
Bsp119I TTCGAA 2 cut(s) 38, 2276
Bsp120I GGGCCC 2 cut(s) 48, 428
Bsp1286I GDGCHC 8 cut(s) 24, 52, 168, 407, 432, 523, 1644, 2304
Bsp13I TCCGGA 1 cut(s) 2196
Bsp1407I TGTACA 1 cut(s) 1597
Bsp19I CCATGG 1 cut(s) 105
BspCNI CTCAG 7 cut(s) 277, 2116, 2131, 2232, 2391, 2725, 2830
BspEI TCCGGA 1 cut(s) 2196
BspFNI CGCG 1 cut(s) 77
BspHI TCATGA 1 cut(s) 1225
BspMAI CTGCAG 2 cut(s) 318, 1618
BspMI ACCTGC 1 cut(s) 787
BspOI GCTAGC 1 cut(s) 1115
BspPI GGATC 7 cut(s) 123, 469, 482, 1142, 1155, 1760, 2008
BspQI GCTCTTC 2 cut(s) 395, 2788
BspT104I TTCGAA 2 cut(s) 38, 2276
BspT107I GGYRCC 1 cut(s) 281
BspTI CTTAAG 2 cut(s) 656, 2900
BsrDI GCAATG 1 cut(s) 2183
BsrFI RCCGGY 5 cut(s) 62, 215, 307, 1067, 1508
BsrGI TGTACA 1 cut(s) 1597
BsrI ACTGG 3 cut(s) 33, 585, 869
BssAI RCCGGY 5 cut(s) 62, 215, 307, 1067, 1508
BssECI CCNNGG 8 cut(s) 105, 111, 406, 407, 1000, 1116, 2065, 2766
BssNI GRCGYC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 2577
BssT1I CCWWGG 3 cut(s) 105, 2065, 2766
Bst2BI CACGAG 1 cut(s) 2577
Bst2UI CCWGG 3 cut(s) 832, 991, 2791
Bst6I CTCTTC 7 cut(s) 35, 244, 395, 1202, 1533, 2102, 2788
BstACI GRCGYC 1 cut(s) 282
BstAFI CTTAAG 2 cut(s) 656, 2900
BstAUI TGTACA 1 cut(s) 1597
BstBAI YACGTR 4 cut(s) 1038, 1975, 2006, 2501
BstBI TTCGAA 2 cut(s) 38, 2276
BstDSI CCRYGG 2 cut(s) 105, 111
BstEII GGTNACC 1 cut(s) 876
BstENI CCTNNNNNAGG 1 cut(s) 1430
BstF5I GGATG 9 cut(s) 685, 1422, 1441, 1495, 1597, 1918, 2000, 2401, 2662
BstFNI CGCG 1 cut(s) 77
BstH2I RGCGCY 4 cut(s) 72, 285, 314, 720
BstHHI GCGC 5 cut(s) 71, 79, 284, 313, 719
BstMAI GTCTC 4 cut(s) 241, 932, 1204, 2744
BstNI CCWGG 3 cut(s) 832, 991, 2791
BstPAI GACNNNNGTC 2 cut(s) 233, 2379
BstPI GGTNACC 1 cut(s) 876
BstSFI CTRYAG 3 cut(s) 314, 1614, 2694
BstSLI GKGCMC 2 cut(s) 52, 432
BstSNI TACGTA 2 cut(s) 1975, 2501
BstUI CGCG 1 cut(s) 77
BstV2I GAAGAC 6 cut(s) 992, 1314, 1955, 2274, 2359, 2912
BstX2I RGATCY 7 cut(s) 115, 186, 474, 1147, 1164, 1633, 2635
BstXI CCANNNNNNTGG 1 cut(s) 2072
BstYI RGATCY 7 cut(s) 115, 186, 474, 1147, 1164, 1633, 2635
BsuI GTATCC 1 cut(s) 2148
BtgI CCRYGG 2 cut(s) 105, 111
BtrI CACGTC 1 cut(s) 2759
BtsCI GGATG 9 cut(s) 685, 1422, 1441, 1495, 1597, 1918, 2000, 2401, 2662
BtsI GCAGTG 1 cut(s) 2831
BtsIMutI CAGTG 6 cut(s) 26, 578, 862, 1675, 2490, 2831
BveI ACCTGC 1 cut(s) 787
CciI TCATGA 1 cut(s) 1225
CfoI GCGC 5 cut(s) 71, 79, 284, 313, 719
Cfr10I RCCGGY 5 cut(s) 62, 215, 307, 1067, 1508
Cfr9I CCCGGG 1 cut(s) 407
CsiI ACCWGGT 1 cut(s) 989
Csp6I GTAC 5 cut(s) 1156, 1598, 2498, 2502, 2708
CspCI CAANNNNNGTGG 4 cut(s) 1010, 1045, 1793, 1828
CviQI GTAC 5 cut(s) 1156, 1598, 2498, 2502, 2708
DinI GGCGCC 1 cut(s) 283
DrdI GACNNNNNNGTC 2 cut(s) 509, 2770
DriI GACNNNNNGTC 1 cut(s) 2623
DseDI GACNNNNNNGTC 2 cut(s) 509, 2770
EaeI YGGCCR 3 cut(s) 108, 1069, 1419
Eam1104I CTCTTC 7 cut(s) 35, 244, 395, 1202, 1533, 2102, 2788
Eam1105I GACNNNNNGTC 1 cut(s) 2623
EarI CTCTTC 7 cut(s) 35, 244, 395, 1202, 1533, 2102, 2788
EciI GGCGGA 1 cut(s) 322
Ecl136II GAGCTC 4 cut(s) 22, 166, 521, 2302
Eco105I TACGTA 2 cut(s) 1975, 2501
Eco130I CCWWGG 3 cut(s) 105, 2065, 2766
Eco24I GRGCYC 7 cut(s) 24, 52, 168, 407, 432, 523, 2304
Eco47I GGWCC 4 cut(s) 411, 417, 1084, 2793
Eco47III AGCGCT 1 cut(s) 718
Eco53kI GAGCTC 4 cut(s) 22, 166, 521, 2302
Eco57I CTGAAG 2 cut(s) 513, 1740
Eco88I CYCGRG 2 cut(s) 407, 1151
Eco91I GGTNACC 1 cut(s) 876
EcoICRI GAGCTC 4 cut(s) 22, 166, 521, 2302
EcoNI CCTNNNNNAGG 1 cut(s) 1430
EcoO109I RGGNCCY 4 cut(s) 48, 428, 762, 2570
EcoO65I GGTNACC 1 cut(s) 876
EcoRI GAATTC 1 cut(s) 2245
EcoRII CCWGG 3 cut(s) 830, 989, 2789
EcoT14I CCWWGG 3 cut(s) 105, 2065, 2766
EcoT22I ATGCAT 1 cut(s) 1920
EcoT38I GRGCYC 7 cut(s) 24, 52, 168, 407, 432, 523, 2304
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
ErhI CCWWGG 3 cut(s) 105, 2065, 2766
Esp3I CGTCTC 1 cut(s) 241
FaqI GGGAC 4 cut(s) 109, 560, 844, 2611
FauI CCCGC 3 cut(s) 82, 438, 630
FauNDI CATATG 1 cut(s) 2776
FblI GTMKAC 1 cut(s) 676
FokI GGATG 9 cut(s) 672, 1409, 1448, 1482, 1604, 1905, 2007, 2408, 2669
FriOI GRGCYC 7 cut(s) 24, 52, 168, 407, 432, 523, 2304
FspBI CTAG 5 cut(s) 701, 1112, 1217, 1301, 2427
GlaI GCGC 5 cut(s) 70, 78, 283, 312, 718
GsaI CCCAGC 1 cut(s) 151
GsuI CTGGAG 4 cut(s) 490, 602, 1646, 2474
HaeII RGCGCY 4 cut(s) 72, 285, 314, 720
HhaI GCGC 5 cut(s) 71, 79, 284, 313, 719
Hin1I GRCGYC 1 cut(s) 282
Hin6I GCGC 5 cut(s) 69, 77, 282, 311, 717
HinP1I GCGC 5 cut(s) 69, 77, 282, 311, 717
HincII GTYRAC 2 cut(s) 1351, 1584
HindII GTYRAC 2 cut(s) 1351, 1584
HphI GGTGA 4 cut(s) 145, 166, 319, 1454
Hpy166II GTNNAC 9 cut(s) 677, 961, 1351, 1584, 1666, 1768, 2504, 2688, 2708
Hpy8I GTNNAC 9 cut(s) 677, 961, 1351, 1584, 1666, 1768, 2504, 2688, 2708
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 5 cut(s) 349, 1357, 1418, 2587, 2676
HpyCH4IV ACGT 7 cut(s) 857, 1037, 1974, 2005, 2385, 2500, 2758
HpySE526I ACGT 7 cut(s) 857, 1037, 1974, 2005, 2385, 2500, 2758
Hsp92I GRCGYC 1 cut(s) 282
HspAI GCGC 5 cut(s) 69, 77, 282, 311, 717
KasI GGCGCC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 2196
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
LguI GCTCTTC 2 cut(s) 395, 2788
LweI GCATC 9 cut(s) 694, 1005, 1120, 1394, 1504, 1582, 1692, 1927, 2033
MabI ACCWGGT 1 cut(s) 989
MaeI CTAG 5 cut(s) 701, 1112, 1217, 1301, 2427
MaeII ACGT 7 cut(s) 857, 1037, 1974, 2005, 2385, 2500, 2758
MaeIII GTNAC 7 cut(s) 588, 814, 876, 1975, 2230, 2381, 2761
MfeI CAATTG 1 cut(s) 1728
MflI RGATCY 7 cut(s) 115, 186, 474, 1147, 1164, 1633, 2635
MhlI GDGCHC 8 cut(s) 24, 52, 168, 407, 432, 523, 1644, 2304
MlsI TGGCCA 2 cut(s) 110, 1421
MluNI TGGCCA 2 cut(s) 110, 1421
Mly113I GGCGCC 1 cut(s) 282
MmeI TCCRAC 4 cut(s) 276, 735, 2389, 2858
Mox20I TGGCCA 2 cut(s) 110, 1421
Mph1103I ATGCAT 1 cut(s) 1920
MreI CGCCGGCG 1 cut(s) 307
MroI TCCGGA 1 cut(s) 2196
MroNI GCCGGC 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 906
MscI TGGCCA 2 cut(s) 110, 1421
Msp20I TGGCCA 2 cut(s) 110, 1421
MspA1I CMGCKG 3 cut(s) 539, 727, 1903
MspCI CTTAAG 2 cut(s) 656, 2900
MunI CAATTG 1 cut(s) 1728
Mva1269I GAATGC 1 cut(s) 1892
MvaI CCWGG 3 cut(s) 832, 991, 2791
MvnI CGCG 1 cut(s) 77
NaeI GCCGGC 1 cut(s) 309
NarI GGCGCC 1 cut(s) 282
NciI CCSGG 9 cut(s) 378, 391, 408, 409, 415, 421, 432, 2590, 2821
NcoI CCATGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 2776
NgoMIV GCCGGC 1 cut(s) 307
NheI GCTAGC 1 cut(s) 1111
NmeAIII GCCGAG 2 cut(s) 122, 1141
NmuCI GTSAC 2 cut(s) 2381, 2761
NsiI ATGCAT 1 cut(s) 1920
NspV TTCGAA 2 cut(s) 38, 2276
PagI TCATGA 1 cut(s) 1225
PciSI GCTCTTC 2 cut(s) 395, 2788
PcsI WCGNNNNNNNCGW 4 cut(s) 89, 119, 189, 2755
PctI GAATGC 1 cut(s) 1892
PdiI GCCGGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 906
PflFI GACNNNGTC 1 cut(s) 991
PfoI TCCNGGA 1 cut(s) 2588
PluTI GGCGCC 1 cut(s) 285
Ppu21I YACGTR 4 cut(s) 1038, 1975, 2006, 2501
PshAI GACNNNNGTC 2 cut(s) 233, 2379
PsiI TTATAA 2 cut(s) 2358, 2913
Psp124BI GAGCTC 4 cut(s) 24, 168, 523, 2304
Psp6I CCWGG 3 cut(s) 830, 989, 2789
PspEI GGTNACC 1 cut(s) 876
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 3 cut(s) 830, 989, 2789
PspOMI GGGCCC 2 cut(s) 48, 428
PstI CTGCAG 2 cut(s) 318, 1618
PsuI RGATCY 7 cut(s) 115, 186, 474, 1147, 1164, 1633, 2635
PsyI GACNNNGTC 1 cut(s) 991
PvuII CAGCTG 2 cut(s) 539, 1903
RsaI GTAC 5 cut(s) 1157, 1599, 2499, 2503, 2709
RsaNI GTAC 5 cut(s) 1156, 1598, 2498, 2502, 2708
SacI GAGCTC 4 cut(s) 24, 168, 523, 2304
SapI GCTCTTC 2 cut(s) 395, 2788
ScaI AGTACT 1 cut(s) 1157
SduI GDGCHC 8 cut(s) 24, 52, 168, 407, 432, 523, 1644, 2304
SexAI ACCWGGT 1 cut(s) 989
SfaNI GCATC 9 cut(s) 694, 1005, 1120, 1394, 1504, 1582, 1692, 1927, 2033
SfcI CTRYAG 3 cut(s) 314, 1614, 2694
SfoI GGCGCC 1 cut(s) 283
SfuI TTCGAA 2 cut(s) 38, 2276
SgrAI CRCCGGYG 1 cut(s) 307
SinI GGWCC 4 cut(s) 411, 417, 1084, 2793
SmaI CCCGGG 1 cut(s) 409
SmlI CTYRAG 5 cut(s) 599, 656, 665, 1168, 2900
SmoI CTYRAG 5 cut(s) 599, 656, 665, 1168, 2900
SnaBI TACGTA 2 cut(s) 1975, 2501
SspDI GGCGCC 1 cut(s) 281
SspI AATATT 3 cut(s) 1191, 1249, 1970
SspMI CTAG 5 cut(s) 701, 1112, 1217, 1301, 2427
SstI GAGCTC 4 cut(s) 24, 168, 523, 2304
StyI CCWWGG 3 cut(s) 105, 2065, 2766
TaiI ACGT 7 cut(s) 860, 1040, 1977, 2008, 2388, 2503, 2761
TaqI TCGA 5 cut(s) 38, 395, 1175, 1875, 2276
TatI WGTACW 3 cut(s) 1155, 1597, 2707
TauI GCSGC 8 cut(s) 200, 207, 287, 338, 341, 700, 730, 2315
TscAI CASTG 6 cut(s) 33, 585, 869, 1675, 2490, 2831
TseFI GTSAC 2 cut(s) 2381, 2761
Tsp45I GTSAC 2 cut(s) 2381, 2761
TspGWI ACGGA 3 cut(s) 128, 2239, 2846
TspMI CCCGGG 1 cut(s) 407
TspRI CASTG 6 cut(s) 33, 585, 869, 1675, 2490, 2831
Tth111I GACNNNGTC 1 cut(s) 991
Vha464I CTTAAG 2 cut(s) 656, 2900
VpaK11BI GGWCC 4 cut(s) 411, 417, 1084, 2793
XagI CCTNNNNNAGG 1 cut(s) 1430
XapI RAATTY 3 cut(s) 531, 1869, 2245
XbaI TCTAGA 1 cut(s) 2426
XcmI CCANNNNNNNNNTGG 3 cut(s) 869, 1273, 2047
XmaI CCCGGG 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 5 cut(s) 701, 1112, 1217, 1301, 2427
ZrmI AGTACT 1 cut(s) 1157
Zsp2I ATGCAT 1 cut(s) 1920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.