Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004827

Physical Location & Seq

Genomic Coordinates Forward (+)

11047196 .. 11049007

Gene Structure 1812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1120100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCAGACTGCACATGAGCAAGGCACTCTTGTTCTGCTCCAGAATTTGGATCCAGCATACACTTCAGCGCAAGTGGAGGTAATAGTATGGCATGGTATTAAGGAAAGCTGCACGGCTAAGATGATTCAGCGGACCGCAAATTCTAGTCCTCACTATGCAGCACAAAAGATTGTTAGAGAATTGGATGAGGGCTGCCTATTGTTGTCAAATGGAAGGTTTGTACAGAAAGAAGCCATATCAACTTCACATTGTTCCCAACCCAACATTATTGAATACGATATGACCATGGAATGGTGTCTACAACAAGAAGGATCAGATCCTTTTTGGAAGAACTTGTATAAGCAACAAGGAAAGGAGTTGAGACAACTCAAAGCTAAACTTAAACGCAAAGATGCACTTAAGGCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

137

Amino Acids

15.53

Weight (kDa)

8.67

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11470 AT5G11470
fragaria_vesca	FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260
malus_domestica	MD08G1120100.v1.1 MD15G1099300.v1.1
prunus_persica	Prupe.1G454000_v2.0.a1
pyrus_communis	pycom08g10040 pycom15g09130
rosa_chinensis	RchiOBHm_Chr6g0305631
rosa_laevigata	RLG00000010871
rosa_multiflora	Rmu_sc0001809.1_g000016
rosa_roxburghii	Rroxscaffold_7G00162510
rosa_rugosa	Rorug06G0342300
rosa_samantha	Rh6AG454200 Rh6BG447300 Rh6CG467900 Rh6DG454500
rosa_wichuraiana	Rw6G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	46, 291
AccI	GTMKAC	1 cut(s)	298
AciI	CCGC	2 cut(s)	130, 135
AclWI	GGATC	4 cut(s)	44, 57, 311, 319
AcsI	RAATTY	2 cut(s)	43, 139
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	46, 291
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	2 cut(s)	108, 374
AluI	AGCT	2 cut(s)	108, 374
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	4 cut(s)	44, 57, 311, 319
ApeKI	GCWGC	3 cut(s)	108, 158, 192
ApoI	RAATTY	2 cut(s)	43, 139
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	95, 170, 179
BceAI	ACGGC	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	1 cut(s)	144
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	3 cut(s)	109, 159, 193
BlsI	GCNGC	3 cut(s)	110, 160, 194
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	51
BmsI	GCATC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 291
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	46, 291
BseXI	GCAGC	3 cut(s)	95, 170, 179
BsgI	GTGCAG	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	46, 291
BsmAI	GTCTC	1 cut(s)	355
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	49, 311, 316
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	2 cut(s)	130, 135
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	4 cut(s)	44, 57, 311, 319
BspTI	CTTAAG	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	3 cut(s)	49, 311, 316
BssT1I	CCWWGG	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	3 cut(s)	52, 314, 319
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	3 cut(s)	49, 311, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	95, 170, 179
BstX2I	RGATCY	2 cut(s)	49, 316
BstYI	RGATCY	2 cut(s)	49, 316
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	132
CpoI	CGGWCCG	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	221
CspI	CGGWCCG	1 cut(s)	132
CviAII	CATG	3 cut(s)	14, 92, 286
CviJI	RGCY	5 cut(s)	108, 116, 192, 233, 374
CviKI_1	RGCY	5 cut(s)	108, 116, 192, 233, 374
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	3 cut(s)	51, 313, 318
DpnII	GATC	3 cut(s)	49, 311, 316
Eco130I	CCWWGG	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	3 cut(s)	17, 95, 289
FaiI	YATR	9 cut(s)	15, 58, 88, 93, 156, 236, 281, 287, 339
FalI	AAGNNNNNCTT	5 cut(s)	12, 44, 363, 395, 381
FatI	CATG	3 cut(s)	13, 91, 285
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	109, 159, 193
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	109, 159, 193
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	3 cut(s)	109, 159, 193
GsuI	CTGGAG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	17, 95, 289
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	2 cut(s)	207, 302
HpyCH4V	TGCA	5 cut(s)	4, 11, 111, 158, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	17, 95, 289
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	49, 311, 316
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	2 cut(s)	53, 66
Lsp1109I	GCAGC	3 cut(s)	95, 170, 179
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	144
MalI	GATC	3 cut(s)	51, 313, 318
MboI	GATC	3 cut(s)	49, 311, 316
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	2 cut(s)	49, 316
MluCI	AATT	3 cut(s)	43, 139, 179
MnlI	CCTC	3 cut(s)	70, 159, 181
MseI	TTAA	3 cut(s)	99, 381, 399
MspA1I	CMGCKG	1 cut(s)	130
MspCI	CTTAAG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	3 cut(s)	49, 311, 316
NlaIII	CATG	3 cut(s)	17, 95, 289
NlaIV	GGNNCC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	2 cut(s)	46, 291
PkrI	GCNGC	3 cut(s)	110, 160, 194
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	49, 316
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
Rsr2I	CGGWCCG	1 cut(s)	132
RsrII	CGGWCCG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	99, 381, 399
SatI	GCNGC	3 cut(s)	109, 159, 193
Sau3AI	GATC	3 cut(s)	49, 311, 316
Sau96I	GGNCC	1 cut(s)	132
SetI	ASST	4 cut(s)	81, 110, 218, 376
SfaNI	GCATC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	43, 139, 179
SsiI	CCGC	2 cut(s)	130, 135
SspMI	CTAG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	285
TasI	AATT	3 cut(s)	43, 139, 179
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	3 cut(s)	99, 381, 399
Tru9I	TTAA	3 cut(s)	99, 381, 399
TseI	GCWGC	3 cut(s)	108, 158, 192
Van91I	CCANNNNNTGG	2 cut(s)	46, 291
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	2 cut(s)	43, 139
XmiI	GTMKAC	1 cut(s)	298
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.