Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004827

Physical Location & Seq

Genomic Coordinates Forward (+)

38169221 .. 38178331

Gene Structure 9111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G454000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGGTAGAAGTTGAGACAAGTGAAGAACTTGAATTTAAGTGGGGAAAAAAGAAAGGAAGGGGAGGGAGAAATAAGGATGTTCAGTTTTATGAATCTTTTACTTATGATGGCGTGGAGTATGGTCTTTATGATTGTGTTTATCTTTACAAGGAAAGTGAACCCGAGCCTGAGATTGGTAAGCTAATAAAAATATGGGAGACTGGTGAGAAGGCAAAGAAAGTCAAAGTTCTATGGTTTTTCCGCCCCTGTGAGATTTTGAATTTTCTTGGAGCTGAAGAGATACTTGAGAATGAGTTGTTTTTGGCATCCGGTGAAGGTGTAGGCCTTGCGAATCTTAATCCATTGGAAGCCATTGCTGGAAAATGCAATGTTCTTTGCATTTCAAAGGACAAGGAAAATCCTCTACCTTCAGCTGAAGAACTTCAAATGGCTGAATTTGTATTTCGTCGAACTTTTGATGTTGGGCAGCAGAAAATCATGGATAAGATAGATGGACAAATTGCTGGGATTGATGTTAAATTCATGTTTAACCGAATGGATATTCAGAAGCCTGGTGGCGTTCTGAAAGTTGATTTAGGAAAAAACGAAGTTTGTGGGAATTCCATAGAAAGTAATGAAACAATGGCTCTATCAAAGAAAAACTCATTTAAAGAACATGTCACTTTAGAGAAAATTGGAAATTGTGTTGATTCTTCAACACAAGAAAATGCTGATTTGGTTAAGCATAAACCTTTGCTTGTAGAAAAGCCTGCTTTTGTTGTAGGTTTAAAATCAAGTGACATGGATAAAACTAATGAAAAAGGGGAACATGCGTCAAACCCCAAGGCCTTATTGAGGTCTAAAGTTAAAAGCAATGAGGGTGAGGTTAGAAGTGGTAAAGTTCATGCACGACAAGTTGCGGAGGAAGAAAATGTGAAGTGTACCAAGGATTCTGTTGATTTGGACAATAGGCCAACCAAGAAGGCGAAGATTGATTGTACTATTAAAGTATCCAATGATAAGGGAAAAATTTGTGAGCAAAGACATGTTAAGGTGGAAGAAAAGATAAGATGCACAAAGGGTTCTGGTGAATTGGACCATGGACAATCTAAGTCGAAGCTTAACACTTCAACCAACGTGGTAAATGACAAAAGCAAAAGTAGTGACCATAAGCGTATGAATGATAAAAAGGTTTTATCATCAACTGCTTCGACACTTGATGATAAATGCAAAGTTAAAAATATGGAGAATTCTCTTGGGACAAACAAAGCCCCTTGCAAGAAGACGAAGCTCGAAGATAAGGCAACAACTCTCTCTAATGTCAAGTTGCCTAAAACCTCTCAACGTAAGGATTTTCTTGGGACAAACGAAGGCCCTTCCAAGAAGATGAAGCCCGATGTTAAGGTTACGACGCTTTCTAATGGCAAGTTGCCACCTCCTACAGAGTCTCAGAATAAGGCCAAAAATTATGGTTTCCAAGTGTTGGAAGTCACTCAACGTCCCGATGCTGACAGAAGAACATGGTTTAAGGGATTTCCTTGGGAAGATAGAATGCAGACTGCACATGAGCAGGGCACCCTTGTTTTGCTCCAGAATTTGGATCCGGCATTCACTTCAGCAGAAGTGGAGGACATAGTATGGCATGGTTTCAAGGAAACTTGCACGGCTAAGATGATTCAGCGAATTTCAAATTCTAGCCCTCACTCAGGACAAGCTCTCGTTATTTTTAAAACTAGGGAAGCAGCACAGATGGTTGTTAGAAAATTAGATGAGGGCTGCTTGTTATTGTCAAATGGAAGGCCTCTTGTCGGCAGCATCGGAACTCACTCTGCGGAAAAGAAACCAATTTTTTTTGGTCATCTAGTTATTGATAAACTTCGGCACCAAATGCTGCGGGAAAGGGAGATGAAAGAAGCTGTATCCACTTCACATTGTTCTCAGCCTAACACTACTGAATATGATATGGCCATGGAGTGGTGCTTACTACAAGAAAGATCAGACCTTGTTTGGGGGAACCTGTATAAGCAACAAGGTAAGGAGTTGAGAAAACTCAAAGCTGAACTCAAGGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

685

Amino Acids

76.91

Weight (kDa)

8.81

Isoelectric Point (pI)

28.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11470 AT5G11470
fragaria_vesca	FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260
malus_domestica	MD08G1120100.v1.1 MD15G1099300.v1.1
prunus_persica	Prupe.1G454000_v2.0.a1
pyrus_communis	pycom08g10040 pycom15g09130
rosa_chinensis	RchiOBHm_Chr6g0305631
rosa_laevigata	RLG00000010871
rosa_multiflora	Rmu_sc0001809.1_g000016
rosa_roxburghii	Rroxscaffold_7G00162510
rosa_rugosa	Rorug06G0342300
rosa_samantha	Rh6AG454200 Rh6BG447300 Rh6CG467900 Rh6DG454500
rosa_wichuraiana	Rw6G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1553, 1860
AccB7I	CCANNNNNTGG	3 cut(s)	1462, 1576, 1953
AciI	CCGC	4 cut(s)	241, 899, 1811, 1873
AclWI	GGATC	2 cut(s)	1574, 1587
AcoI	YGGCCR	1 cut(s)	1944
AcuI	CTGAAG	4 cut(s)	294, 393, 435, 1578
AfaI	GTAC	2 cut(s)	922, 979
AfiI	CCNNNNNNNGG	8 cut(s)	173, 834, 1462, 1576, 1685, 1787, 1953, 1987
AflIII	ACRYGT	2 cut(s)	655, 1024
AgsI	TTSAA	8 cut(s)	32, 259, 384, 425, 696, 1110, 1630, 1668
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	8 cut(s)	181, 272, 413, 1099, 1270, 1694, 1895, 2036
AluI	AGCT	8 cut(s)	181, 272, 413, 1099, 1270, 1694, 1895, 2036
Alw26I	GTCTC	3 cut(s)	8, 191, 1431
AlwI	GGATC	2 cut(s)	1574, 1587
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	8 cut(s)	322, 825, 950, 1351, 1437, 1778, 1944, 2046
ApeKI	GCWGC	5 cut(s)	466, 1721, 1755, 1791, 1870
Asp700I	GAANNNNTTC	1 cut(s)	420
AspS9I	GGNCC	2 cut(s)	1075, 1352
AsuHPI	GGTGA	4 cut(s)	215, 323, 872, 1079
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	1075
BaeGI	GKGCMC	1 cut(s)	1556
BalI	TGGCCA	1 cut(s)	1946
BamHI	GGATCC	1 cut(s)	1579
BanI	GGYRCC	2 cut(s)	1553, 1860
BbsI	GAAGAC	1 cut(s)	1268
BbvI	GCAGC	5 cut(s)	478, 1733, 1742, 1803, 1857
BccI	CCATC	3 cut(s)	101, 485, 1723
BceAI	ACGGC	1 cut(s)	1659
BciT130I	CCWGG	1 cut(s)	552
BciVI	GTATCC	2 cut(s)	1000, 1909
BcoDI	GTCTC	3 cut(s)	8, 191, 1431
BfaI	CTAG	3 cut(s)	1674, 1713, 1841
BfmI	CTRYAG	1 cut(s)	1419
BfuI	GTATCC	2 cut(s)	1000, 1909
BisI	GCNGC	5 cut(s)	467, 1722, 1756, 1792, 1871
BlsI	GCNGC	5 cut(s)	468, 1723, 1757, 1793, 1872
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	1075
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	1075, 1352
BmiI	GGNNCC	4 cut(s)	1555, 1581, 1862, 1994
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	4 cut(s)	314, 1040, 1474, 1803
BpiI	GAAGAC	1 cut(s)	1268
BpmI	CTGGAG	1 cut(s)	1553
BpuEI	CTTGAG	2 cut(s)	305, 2027
BsaJI	CCNNGG	5 cut(s)	822, 924, 1078, 1517, 1947
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	8 cut(s)	173, 834, 1462, 1576, 1685, 1787, 1953, 1987
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	3 cut(s)	351, 373, 859
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	5 cut(s)	822, 924, 1078, 1517, 1947
BseGI	GGATG	2 cut(s)	82, 305
BseLI	CCNNNNNNNGG	8 cut(s)	173, 834, 1462, 1576, 1685, 1787, 1953, 1987
BseMI	GCAATG	3 cut(s)	351, 373, 859
BseMII	CTCAG	4 cut(s)	159, 1442, 1698, 1931
BseNI	ACTGG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	1556
BseXI	GCAGC	5 cut(s)	478, 1733, 1742, 1803, 1857
BseYI	CCCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	1524
BshFI	GGCC	8 cut(s)	324, 827, 952, 1353, 1439, 1780, 1946, 2048
BshNI	GGYRCC	2 cut(s)	1553, 1860
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	309, 1583
BslFI	GGGAC	3 cut(s)	1252, 1354, 1464
BslI	CCNNNNNNNGG	8 cut(s)	173, 834, 1462, 1576, 1685, 1787, 1953, 1987
BsmAI	GTCTC	3 cut(s)	8, 191, 1431
BsmFI	GGGAC	3 cut(s)	1252, 1354, 1464
BsmI	GAATGC	2 cut(s)	1536, 1586
BsnI	GGCC	8 cut(s)	324, 827, 952, 1353, 1439, 1780, 1946, 2048
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	1556
Bsp143I	GATC	2 cut(s)	1579, 1973
Bsp19I	CCATGG	2 cut(s)	1078, 1947
BspACI	CCGC	4 cut(s)	241, 899, 1811, 1873
BspANI	GGCC	8 cut(s)	324, 827, 952, 1353, 1439, 1780, 1946, 2048
BspCNI	CTCAG	4 cut(s)	160, 1441, 1697, 1930
BspLI	GGNNCC	4 cut(s)	1555, 1581, 1862, 1994
BspPI	GGATC	2 cut(s)	1574, 1587
BspT107I	GGYRCC	2 cut(s)	1553, 1860
BsrDI	GCAATG	3 cut(s)	351, 373, 859
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	5 cut(s)	822, 924, 1078, 1517, 1947
BssMI	GATC	2 cut(s)	1579, 1973
BssT1I	CCWWGG	5 cut(s)	822, 924, 1078, 1517, 1947
Bst2UI	CCWGG	1 cut(s)	552
Bst6I	CTCTTC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	1867
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	6 cut(s)	168, 1089, 1428, 1647, 1684, 1917
BstDSI	CCRYGG	2 cut(s)	1078, 1947
BstENI	CCTNNNNNAGG	2 cut(s)	832, 1683
BstF5I	GGATG	2 cut(s)	82, 305
BstKTI	GATC	2 cut(s)	1582, 1976
BstMAI	GTCTC	3 cut(s)	8, 191, 1431
BstMBI	GATC	2 cut(s)	1579, 1973
BstMWI	GCNNNNNNNGC	1 cut(s)	1867
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	3 cut(s)	659, 812, 1028
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	1419
BstSLI	GKGCMC	1 cut(s)	1556
BstV1I	GCAGC	5 cut(s)	478, 1733, 1742, 1803, 1857
BstV2I	GAAGAC	1 cut(s)	1268
BstX2I	RGATCY	1 cut(s)	1579
BstYI	RGATCY	1 cut(s)	1579
BsuI	GTATCC	2 cut(s)	1000, 1909
BsuRI	GGCC	8 cut(s)	324, 827, 952, 1353, 1439, 1780, 1946, 2048
BtgI	CCRYGG	2 cut(s)	1078, 1947
BtsCI	GGATG	2 cut(s)	82, 305
Cac8I	GCNNGC	1 cut(s)	750
Cfr13I	GGNCC	2 cut(s)	1075, 1352
CseI	GACGC	2 cut(s)	801, 1399
Csp6I	GTAC	2 cut(s)	921, 978
CspCI	CAANNNNNGTGG	2 cut(s)	1098, 1133
CviQI	GTAC	2 cut(s)	921, 978
DdeI	CTNAG	6 cut(s)	168, 1089, 1428, 1647, 1684, 1917
DpnI	GATC	2 cut(s)	1581, 1975
DpnII	GATC	2 cut(s)	1579, 1973
DraI	TTTAAA	3 cut(s)	649, 768, 1708
EaeI	YGGCCR	1 cut(s)	1944
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	230
Eco130I	CCWWGG	5 cut(s)	822, 924, 1078, 1517, 1947
Eco147I	AGGCCT	3 cut(s)	324, 827, 1780
Eco47I	GGWCC	1 cut(s)	1075
Eco57I	CTGAAG	4 cut(s)	294, 393, 435, 1578
Eco88I	CYCGRG	1 cut(s)	161
EcoNI	CCTNNNNNAGG	2 cut(s)	832, 1683
EcoO109I	RGGNCCY	1 cut(s)	1352
EcoRI	GAATTC	2 cut(s)	598, 1228
EcoRII	CCWGG	1 cut(s)	550
EcoT14I	CCWWGG	5 cut(s)	822, 924, 1078, 1517, 1947
ErhI	CCWWGG	5 cut(s)	822, 924, 1078, 1517, 1947
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	3 cut(s)	1252, 1354, 1464
FauI	CCCGC	1 cut(s)	1866
Fnu4HI	GCNGC	5 cut(s)	467, 1722, 1756, 1792, 1871
FokI	GGATG	2 cut(s)	89, 292
Fsp4HI	GCNGC	5 cut(s)	467, 1722, 1756, 1792, 1871
FspBI	CTAG	3 cut(s)	1674, 1713, 1841
GluI	GCNGC	5 cut(s)	467, 1722, 1756, 1792, 1871
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	1553
HaeIII	GGCC	8 cut(s)	324, 827, 952, 1353, 1439, 1780, 1946, 2048
HapII	CCGG	2 cut(s)	309, 1583
HgaI	GACGC	2 cut(s)	801, 1399
HindIII	AAGCTT	1 cut(s)	1097
HinfI	GANTC	6 cut(s)	92, 331, 689, 929, 1424, 1654
HpaII	CCGG	2 cut(s)	309, 1583
HphI	GGTGA	4 cut(s)	215, 323, 872, 1079
Hpy166II	GTNNAC	2 cut(s)	158, 921
Hpy188I	TCNGA	5 cut(s)	546, 564, 1431, 1799, 1978
Hpy188III	TCNNGA	3 cut(s)	1481, 1570, 1686
Hpy8I	GTNNAC	2 cut(s)	158, 921
Hpy99I	CGWCG	2 cut(s)	450, 1393
HpyAV	CCTTC	8 cut(s)	51, 202, 308, 417, 955, 1343, 1365, 1770
HpyCH4IV	ACGT	3 cut(s)	1116, 1324, 1477
HpyCH4V	TGCA	9 cut(s)	366, 378, 887, 1053, 1209, 1257, 1534, 1541, 1641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1867
HpyF3I	CTNAG	6 cut(s)	168, 1089, 1428, 1647, 1684, 1917
HpySE526I	ACGT	3 cut(s)	1116, 1324, 1477
Kzo9I	GATC	2 cut(s)	1579, 1973
LmnI	GCTCC	2 cut(s)	269, 1572
Lsp1109I	GCAGC	5 cut(s)	478, 1733, 1742, 1803, 1857
LweI	GCATC	4 cut(s)	314, 1040, 1474, 1803
MaeI	CTAG	3 cut(s)	1674, 1713, 1841
MaeII	ACGT	3 cut(s)	1116, 1324, 1477
MaeIII	GTNAC	5 cut(s)	658, 776, 1142, 1384, 1468
MalI	GATC	2 cut(s)	1581, 1975
MboI	GATC	2 cut(s)	1579, 1973
MflI	RGATCY	1 cut(s)	1579
MhlI	GDGCHC	1 cut(s)	1556
MlsI	TGGCCA	1 cut(s)	1946
MluNI	TGGCCA	1 cut(s)	1946
MlyI	GAGTC	1 cut(s)	1433
MmeI	TCCRAC	1 cut(s)	1443
Mox20I	TGGCCA	1 cut(s)	1946
MroXI	GAANNNNTTC	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	1946
Msp20I	TGGCCA	1 cut(s)	1946
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	2 cut(s)	309, 1583
MspR9I	CCNGG	1 cut(s)	552
Mva1269I	GAATGC	2 cut(s)	1536, 1586
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	1 cut(s)	1867
NcoI	CCATGG	2 cut(s)	1078, 1947
NdeII	GATC	2 cut(s)	1579, 1973
NlaIV	GGNNCC	4 cut(s)	1555, 1581, 1862, 1994
NmuCI	GTSAC	4 cut(s)	658, 776, 1142, 1468
NspI	RCATGY	3 cut(s)	659, 812, 1028
PceI	AGGCCT	3 cut(s)	324, 827, 1780
PciI	ACATGT	2 cut(s)	655, 1024
PctI	GAATGC	2 cut(s)	1536, 1586
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	5 cut(s)	92, 331, 689, 929, 1654
PflMI	CCANNNNNTGG	3 cut(s)	1462, 1576, 1953
PkrI	GCNGC	5 cut(s)	468, 1723, 1757, 1793, 1872
PleI	GAGTC	1 cut(s)	1432
PpsI	GAGTC	1 cut(s)	1432
PscI	ACATGT	2 cut(s)	655, 1024
Psp6I	CCWGG	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	4 cut(s)	1555, 1581, 1862, 1994
PspPI	GGNCC	2 cut(s)	1075, 1352
PsuI	RGATCY	1 cut(s)	1579
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	922, 979
RsaNI	GTAC	2 cut(s)	921, 978
SatI	GCNGC	5 cut(s)	467, 1722, 1756, 1792, 1871
Sau3AI	GATC	2 cut(s)	1579, 1973
Sau96I	GGNCC	2 cut(s)	1075, 1352
SchI	GAGTC	1 cut(s)	1433
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	1 cut(s)	1556
SfaNI	GCATC	4 cut(s)	314, 1040, 1474, 1803
SfcI	CTRYAG	1 cut(s)	1419
SinI	GGWCC	1 cut(s)	1075
SmlI	CTYRAG	2 cut(s)	284, 2042
SmoI	CTYRAG	2 cut(s)	284, 2042
SseBI	AGGCCT	3 cut(s)	324, 827, 1780
SsiI	CCGC	4 cut(s)	241, 899, 1811, 1873
SspMI	CTAG	3 cut(s)	1674, 1713, 1841
StuI	AGGCCT	3 cut(s)	324, 827, 1780
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	5 cut(s)	822, 924, 1078, 1517, 1947
TaiI	ACGT	3 cut(s)	1119, 1327, 1480
TaqI	TCGA	4 cut(s)	448, 1094, 1190, 1272
TatI	WGTACW	1 cut(s)	977
TfiI	GAWTC	5 cut(s)	92, 331, 689, 929, 1654
TseFI	GTSAC	4 cut(s)	658, 776, 1142, 1468
TseI	GCWGC	5 cut(s)	466, 1721, 1755, 1791, 1870
Tsp45I	GTSAC	4 cut(s)	658, 776, 1142, 1468
TspDTI	ATGAA	8 cut(s)	105, 511, 630, 810, 872, 1172, 1382, 1901
Van91I	CCANNNNNTGG	3 cut(s)	1462, 1576, 1953
VpaK11BI	GGWCC	1 cut(s)	1075
XagI	CCTNNNNNAGG	2 cut(s)	832, 1683
XceI	RCATGY	3 cut(s)	659, 812, 1028
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	3 cut(s)	1674, 1713, 1841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.