pycom08g10040

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0004827
Physical Location & Seq
Forward (+)
8388883 .. 8391902
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g10040.1

Sequence Viewer

Length: 1662 bp
ATGGAAGAAGATACACCGACTGAAGAGCTTGAATTTACGTGGGGAAAGAAGAAAGGAAAGGGAGGGAAAAATAAGGACGTTCTGTTTTATGAATCTTTCACTTTTGATGGTGAAGAGTATACCCTGTATGATTGTGTATATCTTTACAAGAAAGATGAACCTGAGCCTGAGATTGGAAAGCTAATAAAAATATGGGAAACTGGTGAGAAGGCAAAGAAAGTTAAAGTTTTATGGTTTTTTCGTCCTTGTGAGATTTCAAATTTTCTTGGAGGTGAAGAGATACTTGAGAATGAGTTGTTTTTGGCATCCGGTGAAGGTGTAGGCCTTGCGAATCTTAATCCATTGGAATCTATTGCTGGAAAATGCAATGTTCTTTGCATTTCAAAGCACAAGGAAAATCCTCAACCATCAGACGAAGAGCTTCAAATGGCCGAATTTGTGTTTCATCGAACCTTTGATGTTGGGCTGCAAAAAATTGCCGATAAGATGGAAGGAATAATTGCTGGGATTGATGTTAAATTCATGTTTAACAAAAAGGAAATTCAGAAGCCTGGTGGCGTTCTGAAAGTTGATTTAGGAAAAAATGAAGTTTGTGGGAATGTCATAGCAAGTAATGAAACAATGGTTCTATCAAAGAAAAACTCATTTAAAGAAAATATCACTTTAGAGACAAATGAAAATTGTGTTGATTCTTCAACTCAAGAAAATGGTGATTTGGTTAAGCATAAACCATCACTTGTAGAAAAGCCTGCTTCTGGTGTAGGTTTAAATTCAAGTGACACGAATAAAATGAATGAAAAACTGGAACATGTGTCAAATCCCATGGCCTTGTTGAGGTTTGAAGTTAAAAGTGATGAAGGTGAGGTTAAGCATGGTAAAGTTCATGCACGACAAGTTGAAGAGGAAGAAAAAGTGAAGTTCACTAAGGATAACATTGATTCGGATAATAGGCCAACCAAGAAGGCGAAGCTTGATACGGGAAAAATTAGAGAGCGAATACATGTGGAGGTGGAAAGAAAGAAAAAATTTACCAGTGTTTGTGACCCAAAGGTGAAGAATGACGCTTCAATTGAAGTGGGCAACGATAAAAACAAAAGTAGTGACTTGAAGCATAGGAGTGATACAAAGGTTTTATACCCAAAGGTTTCTGATGAAGTGGACCATGGACAATCAAAAAAGCCGAAGCTTGACACTTCAATTGAAGTGCCCAATGACAAAAGCAAAAGTAGTGACCCAAAGTGTGTGAATGCTACAAAGGTTTTATCACCGACTATGTCTGCTCTTGATGATATATCCAAACTTAAGTCTGCAAAGGATTCTCTTGGAACAAACAATTCCCCTCTCAAGAAGATGAAGCCTGATGATAAGGCAACGACCATTTCCAATGGCAACGATGGCAACTTGCCTAAAGCATCTCAACGTAAAGTCAAACATGATTGTCGTGGAACAGACAAAGAGTCTTGCAAGAAGATAAATCTCAATGAGAAGGCCATGGCGCTTTCTGATGGCAAGTTGCCTAAAGTGCCTCCTACACAGTCTCAAAGTATGGCTGATAAAGTTGATGGCCTTGTAGTGGAAGTTACTCGACATCCCAATGGTGTAAGTAATGCCTCTCTTTCCTCATTTCATTCTTGTCCAATGATCACCTTATTGATAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

554

Amino Acids

61.43

Weight (kDa)

6.88

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 39 - 134 2.7e-11 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 7 cut(s) 32, 259, 434, 518, 540, 769, 1025
AcuI CTGAAG 1 cut(s) 42
AfiI CCNNNNNNNGG 4 cut(s) 173, 755, 834, 1573
AflII CTTAAG 1 cut(s) 1301
AflIII ACRYGT 2 cut(s) 808, 1000
AhdI GACNNNNNGTC 1 cut(s) 1456
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 5 cut(s) 28, 181, 421, 970, 1186
AluI AGCT 5 cut(s) 28, 181, 421, 970, 1186
Alw26I GTCTC 2 cut(s) 662, 1542
AoxI GGCC 6 cut(s) 322, 429, 825, 950, 1488, 1564
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 7 cut(s) 32, 259, 434, 518, 540, 769, 1025
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 1 cut(s) 1498
AspS9I GGNCC 1 cut(s) 1159
AsuHPI GGTGA 9 cut(s) 122, 215, 284, 323, 722, 872, 1063, 1257, 1636
AvaII GGWCC 1 cut(s) 1159
BaeGI GKGCMC 1 cut(s) 1209
BaeI ACNNNNGTAYC 2 cut(s) 1113, 1146
BbvI GCAGC 1 cut(s) 453
BccI CCATC 7 cut(s) 101, 415, 481, 739, 1388, 1499, 1556
BciT130I CCWGG 1 cut(s) 552
BclI TGATCA 1 cut(s) 1641
BcoDI GTCTC 2 cut(s) 662, 1542
BfoI RGCGCY 1 cut(s) 1499
BfrI CTTAAG 1 cut(s) 1301
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 1 cut(s) 1159
BmeRI GACNNNNNGTC 1 cut(s) 1456
BmgT120I GGNCC 1 cut(s) 1159
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 314, 1421
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 3 cut(s) 305, 684, 1328
BsaAI YACGTR 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 822, 1162, 1491
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 755, 834, 1573
Bse1I ACTGG 3 cut(s) 205, 807, 1032
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 3 cut(s) 822, 1162, 1491
BseGI GGATG 2 cut(s) 305, 1588
BseLI CCNNNNNNNGG 4 cut(s) 173, 755, 834, 1573
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 153, 159
BseNI ACTGG 3 cut(s) 205, 807, 1032
BseSI GKGCMC 1 cut(s) 1209
BseXI GCAGC 1 cut(s) 453
BseYI CCCAGC 1 cut(s) 503
BshFI GGCC 6 cut(s) 324, 431, 827, 952, 1490, 1566
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 4 cut(s) 173, 755, 834, 1573
BsmAI GTCTC 2 cut(s) 662, 1542
BsmI GAATGC 1 cut(s) 1252
BsnI GGCC 6 cut(s) 324, 431, 827, 952, 1490, 1566
Bsp1286I GDGCHC 1 cut(s) 1209
Bsp143I GATC 1 cut(s) 1641
Bsp19I CCATGG 3 cut(s) 822, 1162, 1491
BspANI GGCC 6 cut(s) 324, 431, 827, 952, 1490, 1566
BspCNI CTCAG 2 cut(s) 154, 160
BspQI GCTCTTC 2 cut(s) 18, 411
BspTI CTTAAG 1 cut(s) 1301
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 3 cut(s) 205, 807, 1032
BssECI CCNNGG 3 cut(s) 822, 1162, 1491
BssMI GATC 1 cut(s) 1641
BssNAI GTATAC 1 cut(s) 120
BssT1I CCWWGG 3 cut(s) 822, 1162, 1491
Bst1107I GTATAC 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 1536
Bst6I CTCTTC 5 cut(s) 18, 108, 270, 411, 894
BstAFI CTTAAG 1 cut(s) 1301
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 750
BstDEI CTNAG 3 cut(s) 162, 168, 924
BstDSI CCRYGG 3 cut(s) 822, 1162, 1491
BstENI CCTNNNNNAGG 1 cut(s) 832
BstF5I GGATG 2 cut(s) 305, 1588
BstH2I RGCGCY 1 cut(s) 1499
BstHHI GCGC 1 cut(s) 1498
BstKTI GATC 1 cut(s) 1644
BstMAI GTCTC 2 cut(s) 662, 1542
BstMBI GATC 1 cut(s) 1641
BstMWI GCNNNNNNNGC 2 cut(s) 1395, 1522
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 2 cut(s) 812, 1004
BstSCI CCNGG 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 1209
BstV1I GCAGC 1 cut(s) 453
BstZ17I GTATAC 1 cut(s) 120
BsuRI GGCC 6 cut(s) 324, 431, 827, 952, 1490, 1566
BtgI CCRYGG 3 cut(s) 822, 1162, 1491
BtsCI GGATG 2 cut(s) 305, 1588
BtsIMutI CAGTG 1 cut(s) 1039
Cac8I GCNNGC 1 cut(s) 750
CfoI GCGC 1 cut(s) 1498
Cfr13I GGNCC 1 cut(s) 1159
CseI GACGC 1 cut(s) 1070
CspCI CAANNNNNGTGG 2 cut(s) 1056, 1091
CviAII CATG 9 cut(s) 523, 809, 823, 872, 884, 1001, 1163, 1433, 1492
DdeI CTNAG 3 cut(s) 162, 168, 924
DpnI GATC 1 cut(s) 1643
DpnII GATC 1 cut(s) 1641
DraI TTTAAA 2 cut(s) 649, 768
DriI GACNNNNNGTC 1 cut(s) 1456
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 5 cut(s) 18, 108, 270, 411, 894
Eam1105I GACNNNNNGTC 1 cut(s) 1456
EarI CTCTTC 5 cut(s) 18, 108, 270, 411, 894
Eco130I CCWWGG 3 cut(s) 822, 1162, 1491
Eco147I AGGCCT 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 1159
Eco57I CTGAAG 1 cut(s) 42
EcoNI CCTNNNNNAGG 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 3 cut(s) 822, 1162, 1491
ErhI CCWWGG 3 cut(s) 822, 1162, 1491
FaeI CATG 9 cut(s) 526, 812, 826, 875, 887, 1004, 1166, 1436, 1495
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 9 cut(s) 522, 808, 822, 871, 883, 1000, 1162, 1432, 1491
FbaI TGATCA 1 cut(s) 1641
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 467
FokI GGATG 2 cut(s) 292, 1575
Fsp4HI GCNGC 1 cut(s) 467
GlaI GCGC 1 cut(s) 1497
GluI GCNGC 1 cut(s) 467
GsaI CCCAGC 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 1499
HaeIII GGCC 6 cut(s) 324, 431, 827, 952, 1490, 1566
HapII CCGG 1 cut(s) 309
HgaI GACGC 1 cut(s) 1070
HhaI GCGC 1 cut(s) 1498
Hin1II CATG 9 cut(s) 526, 812, 826, 875, 887, 1004, 1166, 1436, 1495
Hin6I GCGC 1 cut(s) 1496
HinP1I GCGC 1 cut(s) 1496
HindIII AAGCTT 2 cut(s) 968, 1184
HinfI GANTC 7 cut(s) 92, 331, 347, 689, 938, 1316, 1457
HpaII CCGG 1 cut(s) 309
HphI GGTGA 9 cut(s) 122, 215, 284, 323, 722, 872, 1063, 1257, 1636
Hpy166II GTNNAC 3 cut(s) 120, 921, 1159
Hpy188I TCNGA 6 cut(s) 412, 546, 564, 943, 1150, 1504
Hpy188III TCNNGA 3 cut(s) 701, 1283, 1345
Hpy8I GTNNAC 3 cut(s) 120, 921, 1159
HpyAV CCTTC 6 cut(s) 202, 308, 485, 851, 955, 1480
HpyCH4III ACNGT 1 cut(s) 1536
HpyCH4IV ACGT 3 cut(s) 38, 78, 1420
HpyCH4V TGCA 6 cut(s) 366, 378, 469, 887, 1310, 1464
HpyF10VI GCNNNNNNNGC 2 cut(s) 1395, 1522
HpyF3I CTNAG 3 cut(s) 162, 168, 924
HpySE526I ACGT 3 cut(s) 38, 78, 1420
Hsp92II CATG 9 cut(s) 526, 812, 826, 875, 887, 1004, 1166, 1436, 1495
HspAI GCGC 1 cut(s) 1496
Ksp22I TGATCA 1 cut(s) 1641
Kzo9I GATC 1 cut(s) 1641
LguI GCTCTTC 2 cut(s) 18, 411
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 2 cut(s) 314, 1421
MaeII ACGT 3 cut(s) 38, 78, 1420
MaeIII GTNAC 5 cut(s) 776, 1040, 1100, 1229, 1579
MalI GATC 1 cut(s) 1643
MboI GATC 1 cut(s) 1641
MfeI CAATTG 2 cut(s) 1068, 1197
MhlI GDGCHC 1 cut(s) 1209
MlyI GAGTC 1 cut(s) 1466
MroXI GAANNNNTTC 1 cut(s) 420
MslI CAYNNNNRTG 2 cut(s) 1116, 1593
MspCI CTTAAG 1 cut(s) 1301
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 2 cut(s) 1068, 1197
Mva1269I GAATGC 1 cut(s) 1252
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 1395, 1522
NcoI CCATGG 3 cut(s) 822, 1162, 1491
NdeII GATC 1 cut(s) 1641
NlaIII CATG 9 cut(s) 526, 812, 826, 875, 887, 1004, 1166, 1436, 1495
NmuCI GTSAC 4 cut(s) 776, 1040, 1100, 1229
NspI RCATGY 2 cut(s) 812, 1004
PceI AGGCCT 1 cut(s) 324
PciI ACATGT 2 cut(s) 808, 1000
PciSI GCTCTTC 2 cut(s) 18, 411
PctI GAATGC 1 cut(s) 1252
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 6 cut(s) 92, 331, 347, 689, 938, 1316
PflFI GACNNNGTC 1 cut(s) 1273
PkrI GCNGC 1 cut(s) 468
PleI GAGTC 1 cut(s) 1465
PpsI GAGTC 1 cut(s) 1465
Ppu21I YACGTR 1 cut(s) 39
PscI ACATGT 2 cut(s) 808, 1000
Psp6I CCWGG 1 cut(s) 550
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 1 cut(s) 550
PspPI GGNCC 1 cut(s) 1159
PsyI GACNNNGTC 1 cut(s) 1273
RseI CAYNNNNRTG 2 cut(s) 1116, 1593
SapI GCTCTTC 2 cut(s) 18, 411
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 1 cut(s) 1641
Sau96I GGNCC 1 cut(s) 1159
SchI GAGTC 1 cut(s) 1466
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 1 cut(s) 1209
SfaNI GCATC 2 cut(s) 314, 1421
SinI GGWCC 1 cut(s) 1159
SmiMI CAYNNNNRTG 2 cut(s) 1116, 1593
SmlI CTYRAG 4 cut(s) 284, 699, 1301, 1343
SmoI CTYRAG 4 cut(s) 284, 699, 1301, 1343
SseBI AGGCCT 1 cut(s) 324
StuI AGGCCT 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 3 cut(s) 822, 1162, 1491
TaaI ACNGT 1 cut(s) 1536
TaiI ACGT 3 cut(s) 41, 81, 1423
TaqI TCGA 2 cut(s) 448, 1585
TfiI GAWTC 6 cut(s) 92, 331, 347, 689, 938, 1316
TscAI CASTG 1 cut(s) 1039
TseFI GTSAC 4 cut(s) 776, 1040, 1100, 1229
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 4 cut(s) 776, 1040, 1100, 1229
TspRI CASTG 1 cut(s) 1039
Tth111I GACNNNGTC 1 cut(s) 1273
Vha464I CTTAAG 1 cut(s) 1301
VpaK11BI GGWCC 1 cut(s) 1159
XagI CCTNNNNNAGG 1 cut(s) 832
XapI RAATTY 7 cut(s) 32, 259, 434, 518, 540, 769, 1025
XceI RCATGY 2 cut(s) 812, 1004
XmiI GTMKAC 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.