Rw6G039600

BAH domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
63547293 .. 63554398
7106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039600.1

Sequence Viewer

Length: 1764 bp
ATGATTTTGGGGAGGCGAGAGTTGCCGTCACTGCTTTCCGATCAAAAACAACAACCGTTGAGTGTTAGTCAGGTTGTGGAGAGGCCTGCTTGTAGAATGGTAAAAGTGGAAGAGACTGAAGGTCCTGAATTTAAGTGGGGAATGAAGAAAGCAATTGGTGGAAAAAACAAAGCCACACAGTTCTATAAATCTTTTACTTTCGACGGGGAGCAGTATGACCTTTATGACTGTGTTTATCTTTACAAGGAAGGTGAGCCAGAGCCTGAGATTGAGATACTTGAGAACGAGTTGTTTTTGGCATCTGGTGTTGGTACAGGCCTTTATAATCTGAATCCAGTGTGTCTTTTTAACTTTATTAATAACGTAGATATTTTGTATGTTCAATATATTTTCCATAAACCATATGTGCCTCTGTTATTAGTCTTCGTGCTGCCATCAACTTTCAATTTTATTGCCACTAAATTTTGCATCATAAATCGACACATCTGTGCACGCTTTAAAAAGGTTGGTGATTTGGACAATAGACCAACTAAGAAGGTGAAGCTTGATACTAGTAAAGCATCTAGTGACGATAGAAATAGTCACGAGCAAAGACATGTTGAGGCAGAAGAAAATAGCAATAATAGAAAGAGTAATGCTATATTGGAGCACACACAACTTGAGAAGGCAAACACGAATGCAAGCCGAAGTAGCGAGCATAAACACAAGATCAATGCTAATGGGAGTTATATGAAGGATTTATCACCAATTGCTTCTCCAGTCGATGAAAGATGTGAACGCAAAGAAGATGAAGCCGATGGTAATGCAACGATTCCTTCCAATGACAAGTTTTCCAAATCATTGCATGGAGACAGTAAAAGTAAGGCCCAAAAGGCTTTATCACCAAGTAGCTCCACCATCGATGATAAGTGTAAACGTAAAGATGGAGGGGAGTCTTTAGTGGTGGACAAAGACTCCAAGAAGAAGATGAAGGTTGGCGATAAGGCGACAAGTCTTTCCACTAGCAAGCCGCCTAGACCAACCCCAAGGCCGCCTAAAAATAAGGCCAAAAATTTGATGAAGATGAAGTCCGATGTTAAGGCCCCAAGACTTTCCAATAGGGAGTTGCGTGAACAATCTTCCACACAGTCGCAAAATAAGTCCCAAAAGTTAGATGGTCAAGTTGTGGAAGTTACTCAACGTCCGGGTGCGGATAGAAGAAAGTGGTTCAAGAAGTTTCCCTGGCAAGAGAGAATGCAAGCTGCACACGAGCAAGGAACCCTCATTTTGCTTCAGAATTTGGATCCAGCTTACACGTCAGCAGAAGTGGAGGATATAGTATGGAATGGATTGGGGGAAAGTTGCACAGCTAAGATGATTCAGCAGACTGCAAATTCCAGCCCTTACTCTGGACAAGCTCTTGTTATTTTTAAAACTCGGGAAACAGCACAGAAGGTTGTTAGAAAATTAGATGAGGGCTGCCTGTTATTGTCAAATGGAAGACCTCTAGTTGGCAGCACTGCAACAACTCCTTGTTCCACAGAAAAGAAGGCACATTTTTTTGGTCATCTAGTCATTGATAAACTTCGGCACCCAATGCTAAACGAAAGGGAAATGAAAGAAGCTGTTTCTACTTCACATTTTTCCCAGCCTAACACTATTGAATATGATATGTCCATGGAATGGTGTGCACAACAAGAGAAATCAGATCTTTTGTGGAAGAACCTGTATAAGCAACAATGGAAGGAGGTGAGAGAACTCAAAACTAAACTTAAGGCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

587

Amino Acids

66.63

Weight (kDa)

9.18

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 1569
AccB7I CCANNNNNTGG 1 cut(s) 1662
AciI CCGC 3 cut(s) 1010, 1031, 1190
AclWI GGATC 2 cut(s) 1277, 1290
AcsI RAATTY 5 cut(s) 128, 461, 1051, 1276, 1372
AcuI CTGAAG 2 cut(s) 138, 1256
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 3 cut(s) 1388, 1490, 1662
AflII CTTAAG 1 cut(s) 1751
AflIII ACRYGT 2 cut(s) 595, 1293
AgsI TTSAA 4 cut(s) 383, 445, 1210, 1643
AhdI GACNNNNNGTC 1 cut(s) 120
AhlI ACTAGT 1 cut(s) 551
AjiI CACGTC 1 cut(s) 1296
AjnI CCWGG 1 cut(s) 1220
AleI CACNNNNGTG 1 cut(s) 486
AluBI AGCT 7 cut(s) 544, 891, 1241, 1289, 1349, 1397, 1604
AluI AGCT 7 cut(s) 544, 891, 1241, 1289, 1349, 1397, 1604
Alw21I GWGCWC 3 cut(s) 493, 651, 1672
Alw26I GTCTC 2 cut(s) 107, 843
Alw44I GTGCAC 2 cut(s) 489, 1668
AlwI GGATC 2 cut(s) 1277, 1290
AlwNI CAGNNNCTG 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 1416
AoxI GGCC 7 cut(s) 83, 316, 864, 1028, 1044, 1080, 1755
ApaLI GTGCAC 2 cut(s) 489, 1668
ApeKI GCWGC 4 cut(s) 430, 1241, 1458, 1494
ApoI RAATTY 5 cut(s) 128, 461, 1051, 1276, 1372
AseI ATTAAT 1 cut(s) 357
AspS9I GGNCC 3 cut(s) 122, 865, 1081
AsuC2I CCSGG 1 cut(s) 1185
AsuHPI GGTGA 6 cut(s) 263, 521, 550, 735, 873, 1741
AvaI CYCGRG 1 cut(s) 1416
AvaII GGWCC 1 cut(s) 122
BaeGI GKGCMC 2 cut(s) 493, 1672
BamHI GGATCC 1 cut(s) 1282
BanI GGYRCC 1 cut(s) 1569
BauI CACGAG 2 cut(s) 584, 1247
BbsI GAAGAC 2 cut(s) 415, 1486
Bbv12I GWGCWC 3 cut(s) 493, 651, 1672
BbvI GCAGC 4 cut(s) 417, 1228, 1445, 1506
BccI CCATC 5 cut(s) 442, 791, 905, 917, 1148
BceAI ACGGC 1 cut(s) 10
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BciT130I CCWGG 1 cut(s) 1222
BcnI CCSGG 1 cut(s) 1185
BcoDI GTCTC 2 cut(s) 107, 843
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 6 cut(s) 552, 564, 1002, 1014, 1487, 1550
BfrI CTTAAG 1 cut(s) 1751
BglI GCCNNNNNGGC 1 cut(s) 872
BglII AGATCT 1 cut(s) 1687
BisI GCNGC 6 cut(s) 431, 1010, 1031, 1242, 1459, 1495
BlsI GCNGC 6 cut(s) 432, 1011, 1032, 1243, 1460, 1496
Bme1390I CCNGG 2 cut(s) 1185, 1222
Bme18I GGWCC 1 cut(s) 122
BmeRI GACNNNNNGTC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 1416
BmgBI CACGTC 1 cut(s) 1296
BmgT120I GGNCC 3 cut(s) 122, 865, 1081
BmiI GGNNCC 4 cut(s) 1083, 1258, 1284, 1571
BmrFI CCNGG 2 cut(s) 1185, 1222
BmsI GCATC 3 cut(s) 308, 477, 569
BpiI GAAGAC 2 cut(s) 415, 1486
BpmI CTGGAG 1 cut(s) 741
BpuEI CTTGAG 2 cut(s) 299, 680
BpuMI CCSGG 1 cut(s) 1185
Bsa29I ATCGAT 1 cut(s) 900
BsaJI CCNNGG 3 cut(s) 1025, 1220, 1656
BsaXI ACNNNNNCTCC 2 cut(s) 938, 968
Bsc4I CCNNNNNNNGG 3 cut(s) 1388, 1490, 1662
Bse1I ACTGG 2 cut(s) 335, 758
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 1 cut(s) 1222
BseCI ATCGAT 1 cut(s) 900
BseDI CCNNGG 3 cut(s) 1025, 1220, 1656
BseLI CCNNNNNNNGG 3 cut(s) 1388, 1490, 1662
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 335, 758
BseSI GKGCMC 2 cut(s) 493, 1672
BseXI GCAGC 4 cut(s) 417, 1228, 1445, 1506
BseYI CCCAGC 1 cut(s) 1626
BsgI GTGCAG 1 cut(s) 1227
BshFI GGCC 7 cut(s) 85, 318, 866, 1030, 1046, 1082, 1757
BshNI GGYRCC 1 cut(s) 1569
BshVI ATCGAT 1 cut(s) 900
BsiHKAI GWGCWC 3 cut(s) 493, 651, 1672
BsiHKCI CYCGRG 1 cut(s) 1416
BsiSI CCGG 1 cut(s) 1184
BslFI GGGAC 1 cut(s) 1126
BslI CCNNNNNNNGG 3 cut(s) 1388, 1490, 1662
BsmAI GTCTC 2 cut(s) 107, 843
BsmFI GGGAC 1 cut(s) 1126
BsmI GAATGC 2 cut(s) 682, 1239
BsnI GGCC 7 cut(s) 85, 318, 866, 1030, 1046, 1082, 1757
BsoBI CYCGRG 1 cut(s) 1416
Bsp1286I GDGCHC 3 cut(s) 493, 651, 1672
Bsp143I GATC 4 cut(s) 40, 708, 1282, 1687
Bsp19I CCATGG 1 cut(s) 1656
BspACI CCGC 3 cut(s) 1010, 1031, 1190
BspANI GGCC 7 cut(s) 85, 318, 866, 1030, 1046, 1082, 1757
BspCNI CTCAG 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 900
BspLI GGNNCC 4 cut(s) 1083, 1258, 1284, 1571
BspPI GGATC 2 cut(s) 1277, 1290
BspT107I GGYRCC 1 cut(s) 1569
BspTI CTTAAG 1 cut(s) 1751
BsrDI GCAATG 1 cut(s) 839
BsrI ACTGG 2 cut(s) 335, 758
BssECI CCNNGG 3 cut(s) 1025, 1220, 1656
BssMI GATC 4 cut(s) 40, 708, 1282, 1687
BssSI CACGAG 2 cut(s) 584, 1247
BssT1I CCWWGG 2 cut(s) 1025, 1656
Bst2BI CACGAG 2 cut(s) 584, 1247
Bst2UI CCWGG 1 cut(s) 1222
Bst4CI ACNGT 5 cut(s) 57, 180, 230, 854, 1128
Bst6I CTCTTC 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 1751
BstAPI GCANNNNNTGC 1 cut(s) 1576
BstC8I GCNNGC 6 cut(s) 87, 493, 682, 695, 1007, 1239
BstDEI CTNAG 3 cut(s) 264, 531, 1350
BstDSI CCRYGG 1 cut(s) 1656
BstKTI GATC 4 cut(s) 43, 711, 1285, 1690
BstMAI GTCTC 2 cut(s) 107, 843
BstMBI GATC 4 cut(s) 40, 708, 1282, 1687
BstMWI GCNNNNNNNGC 5 cut(s) 22, 31, 690, 872, 1576
BstNI CCWGG 1 cut(s) 1222
BstNSI RCATGY 1 cut(s) 599
BstSCI CCNGG 2 cut(s) 1183, 1220
BstSLI GKGCMC 2 cut(s) 493, 1672
BstV1I GCAGC 4 cut(s) 417, 1228, 1445, 1506
BstV2I GAAGAC 2 cut(s) 415, 1486
BstX2I RGATCY 2 cut(s) 1282, 1687
BstYI RGATCY 2 cut(s) 1282, 1687
Bsu15I ATCGAT 1 cut(s) 900
BsuRI GGCC 7 cut(s) 85, 318, 866, 1030, 1046, 1082, 1757
BsuTUI ATCGAT 1 cut(s) 900
BtgI CCRYGG 1 cut(s) 1656
BtrI CACGTC 1 cut(s) 1296
BtsI GCAGTG 2 cut(s) 29, 1497
BtsIMutI CAGTG 3 cut(s) 29, 342, 1497
Cac8I GCNNGC 6 cut(s) 87, 493, 682, 695, 1007, 1239
CaiI CAGNNNCTG 1 cut(s) 263
Cfr13I GGNCC 3 cut(s) 122, 865, 1081
ClaI ATCGAT 1 cut(s) 900
Csp6I GTAC 1 cut(s) 312
CviAII CATG 3 cut(s) 596, 845, 1657
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 3 cut(s) 264, 531, 1350
DpnI GATC 4 cut(s) 42, 710, 1284, 1689
DpnII GATC 4 cut(s) 40, 708, 1282, 1687
DraI TTTAAA 2 cut(s) 499, 1411
DriI GACNNNNNGTC 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 105
Eam1105I GACNNNNNGTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 1025, 1656
Eco147I AGGCCT 2 cut(s) 85, 318
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 2 cut(s) 138, 1256
Eco88I CYCGRG 1 cut(s) 1416
EcoO109I RGGNCCY 2 cut(s) 122, 1081
EcoRII CCWGG 1 cut(s) 1220
EcoT14I CCWWGG 2 cut(s) 1025, 1656
ErhI CCWWGG 2 cut(s) 1025, 1656
FaeI CATG 3 cut(s) 599, 848, 1660
FaqI GGGAC 1 cut(s) 1126
FatI CATG 3 cut(s) 595, 844, 1656
FauNDI CATATG 1 cut(s) 403
Fnu4HI GCNGC 6 cut(s) 431, 1010, 1031, 1242, 1459, 1495
Fsp4HI GCNGC 6 cut(s) 431, 1010, 1031, 1242, 1459, 1495
FspBI CTAG 6 cut(s) 552, 564, 1002, 1014, 1487, 1550
GluI GCNGC 6 cut(s) 431, 1010, 1031, 1242, 1459, 1495
GsaI CCCAGC 1 cut(s) 1630
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 7 cut(s) 85, 318, 866, 1030, 1046, 1082, 1757
HapII CCGG 1 cut(s) 1184
Hin1II CATG 3 cut(s) 599, 848, 1660
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 5 cut(s) 331, 811, 932, 953, 1357
HpaII CCGG 1 cut(s) 1184
HphI GGTGA 6 cut(s) 263, 521, 550, 735, 873, 1741
Hpy166II GTNNAC 6 cut(s) 491, 776, 914, 946, 1112, 1670
Hpy188I TCNGA 5 cut(s) 40, 330, 1072, 1275, 1687
Hpy188III TCNNGA 5 cut(s) 125, 584, 1210, 1389, 1418
Hpy8I GTNNAC 6 cut(s) 491, 776, 914, 946, 1112, 1670
Hpy99I CGWCG 1 cut(s) 206
HpyCH4III ACNGT 5 cut(s) 57, 180, 230, 854, 1128
HpyCH4IV ACGT 4 cut(s) 363, 916, 1180, 1295
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 31, 690, 872, 1576
HpyF3I CTNAG 3 cut(s) 264, 531, 1350
HpySE526I ACGT 4 cut(s) 363, 916, 1180, 1295
Hsp92II CATG 3 cut(s) 599, 848, 1660
Kzo9I GATC 4 cut(s) 40, 708, 1282, 1687
LmnI GCTCC 3 cut(s) 208, 646, 896
Lsp1109I GCAGC 4 cut(s) 417, 1228, 1445, 1506
LweI GCATC 3 cut(s) 308, 477, 569
MaeI CTAG 6 cut(s) 552, 564, 1002, 1014, 1487, 1550
MaeII ACGT 4 cut(s) 363, 916, 1180, 1295
MaeIII GTNAC 4 cut(s) 27, 566, 581, 1171
MalI GATC 4 cut(s) 42, 710, 1284, 1689
MboI GATC 4 cut(s) 40, 708, 1282, 1687
MfeI CAATTG 2 cut(s) 153, 747
MflI RGATCY 2 cut(s) 1282, 1687
MhlI GDGCHC 3 cut(s) 493, 651, 1672
MluCI AATT 9 cut(s) 128, 153, 445, 461, 747, 1051, 1276, 1372, 1445
MlyI GAGTC 2 cut(s) 941, 947
MseI TTAA 7 cut(s) 132, 348, 357, 498, 1077, 1410, 1752
MslI CAYNNNNRTG 1 cut(s) 486
MspCI CTTAAG 1 cut(s) 1751
MspI CCGG 1 cut(s) 1184
MspR9I CCNGG 2 cut(s) 1185, 1222
MunI CAATTG 2 cut(s) 153, 747
Mva1269I GAATGC 2 cut(s) 682, 1239
MvaI CCWGG 1 cut(s) 1222
MwoI GCNNNNNNNGC 5 cut(s) 22, 31, 690, 872, 1576
NciI CCSGG 1 cut(s) 1185
NcoI CCATGG 1 cut(s) 1656
NdeI CATATG 1 cut(s) 403
NdeII GATC 4 cut(s) 40, 708, 1282, 1687
NlaIII CATG 3 cut(s) 599, 848, 1660
NlaIV GGNNCC 4 cut(s) 1083, 1258, 1284, 1571
NmuCI GTSAC 3 cut(s) 27, 566, 581
NspI RCATGY 1 cut(s) 599
OliI CACNNNNGTG 1 cut(s) 486
PceI AGGCCT 2 cut(s) 85, 318
PciI ACATGT 1 cut(s) 595
PctI GAATGC 2 cut(s) 682, 1239
PfeI GAWTC 3 cut(s) 331, 811, 1357
PflMI CCANNNNNTGG 1 cut(s) 1662
PkrI GCNGC 6 cut(s) 432, 1011, 1032, 1243, 1460, 1496
PleI GAGTC 2 cut(s) 940, 947
PpsI GAGTC 2 cut(s) 940, 947
PpuMI RGGWCCY 1 cut(s) 122
PscI ACATGT 1 cut(s) 595
PshBI ATTAAT 1 cut(s) 357
PsiI TTATAA 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 1220
PspFI CCCAGC 1 cut(s) 1626
PspGI CCWGG 1 cut(s) 1220
PspN4I GGNNCC 4 cut(s) 1083, 1258, 1284, 1571
PspPI GGNCC 3 cut(s) 122, 865, 1081
PspPPI RGGWCCY 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 2 cut(s) 1282, 1687
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 7 cut(s) 132, 348, 357, 498, 1077, 1410, 1752
SatI GCNGC 6 cut(s) 431, 1010, 1031, 1242, 1459, 1495
Sau3AI GATC 4 cut(s) 40, 708, 1282, 1687
Sau96I GGNCC 3 cut(s) 122, 865, 1081
SchI GAGTC 2 cut(s) 941, 947
ScrFI CCNGG 2 cut(s) 1185, 1222
SduI GDGCHC 3 cut(s) 493, 651, 1672
SfaNI GCATC 3 cut(s) 308, 477, 569
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 3 cut(s) 278, 659, 1751
SmoI CTYRAG 3 cut(s) 278, 659, 1751
SpeI ACTAGT 1 cut(s) 551
Sse9I AATT 9 cut(s) 128, 153, 445, 461, 747, 1051, 1276, 1372, 1445
SseBI AGGCCT 2 cut(s) 85, 318
SsiI CCGC 3 cut(s) 1010, 1031, 1190
SspMI CTAG 6 cut(s) 552, 564, 1002, 1014, 1487, 1550
StuI AGGCCT 2 cut(s) 85, 318
StyD4I CCNGG 2 cut(s) 1183, 1220
StyI CCWWGG 2 cut(s) 1025, 1656
TaaI ACNGT 5 cut(s) 57, 180, 230, 854, 1128
TaiI ACGT 4 cut(s) 366, 919, 1183, 1298
TaqI TCGA 4 cut(s) 201, 478, 762, 900
TasI AATT 9 cut(s) 128, 153, 445, 461, 747, 1051, 1276, 1372, 1445
TauI GCSGC 2 cut(s) 1012, 1033
TfiI GAWTC 3 cut(s) 331, 811, 1357
Tru1I TTAA 7 cut(s) 132, 348, 357, 498, 1077, 1410, 1752
Tru9I TTAA 7 cut(s) 132, 348, 357, 498, 1077, 1410, 1752
TscAI CASTG 3 cut(s) 36, 342, 1504
TseFI GTSAC 3 cut(s) 27, 566, 581
TseI GCWGC 4 cut(s) 430, 1241, 1458, 1494
Tsp45I GTSAC 3 cut(s) 27, 566, 581
TspDTI ATGAA 8 cut(s) 158, 746, 780, 804, 983, 1073, 1079, 1610
TspRI CASTG 3 cut(s) 36, 342, 1504
Van91I CCANNNNNTGG 1 cut(s) 1662
Vha464I CTTAAG 1 cut(s) 1751
VneI GTGCAC 2 cut(s) 489, 1668
VpaK11BI GGWCC 1 cut(s) 122
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 5 cut(s) 128, 461, 1051, 1276, 1372
XceI RCATGY 1 cut(s) 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 1151
XspI CTAG 6 cut(s) 552, 564, 1002, 1014, 1487, 1550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.