Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004827

Physical Location & Seq

Genomic Coordinates Forward (+)

4998512 .. 5003984

Gene Structure 5473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCAAGCTGCACACGAGCAAGGAACCCTCATTTTGCTTCAGAATTTGGATCCAGCTTACACATCAGCAGAAGTGGAGGATATAGTATGGAATGGATTGGGGGAAAGTTGCTCAGCTAAGATGATTCAGCAGACTGCAAATTCCAGCCCTTACTCTGGACAAGCTCTTGTTATTTTTAAAACTTCGGAAACAGCGCAGAAGGTTGTTAGAAAATTAGATGAGGGCTGCCTGTTATTGTCAAATGGAAGACCTCTAGTTGGCAGCACTGCAACAACTCCTTGTTCCACAGAAAAGAAGCCACATTTTTTTGGTCATCTAGTCATTGATAAACTTCGGCACCCAATGCTAAACGAAAGGGAAATGAAAGAAGCTGTTTCTACTTCACATTTTTCCCAGCCTAACACTATTGAATATGATATGTCCATGGAATGGTGTGCACAACAAGAGAAATCAGATCTTTTGTGGAAGAACCTGTATAAGCAACAATGGAAGGAGGTGAGAGAACTCAAAGCTAAACTTAAGGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

176

Amino Acids

19.88

Weight (kDa)

6.96

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11470 AT5G11470
fragaria_vesca	FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260
malus_domestica	MD08G1120100.v1.1 MD15G1099300.v1.1
prunus_persica	Prupe.1G454000_v2.0.a1
pyrus_communis	pycom08g10040 pycom15g09130
rosa_chinensis	RchiOBHm_Chr6g0305631
rosa_laevigata	RLG00000010871
rosa_multiflora	Rmu_sc0001809.1_g000016
rosa_roxburghii	Rroxscaffold_7G00162510
rosa_rugosa	Rorug06G0342300
rosa_samantha	Rh6AG454200 Rh6BG447300 Rh6CG467900 Rh6DG454500
rosa_wichuraiana	Rw6G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AccB7I	CCANNNNNTGG	1 cut(s)	429
AclWI	GGATC	2 cut(s)	44, 57
AcsI	RAATTY	2 cut(s)	43, 139
AcuI	CTGAAG	1 cut(s)	23
AfiI	CCNNNNNNNGG	3 cut(s)	155, 257, 429
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	1 cut(s)	410
AluBI	AGCT	6 cut(s)	8, 56, 116, 164, 371, 512
AluI	AGCT	6 cut(s)	8, 56, 116, 164, 371, 512
Alw21I	GWGCWC	1 cut(s)	439
Alw44I	GTGCAC	1 cut(s)	435
AlwI	GGATC	2 cut(s)	44, 57
AoxI	GGCC	1 cut(s)	522
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	3 cut(s)	8, 225, 261
ApoI	RAATTY	2 cut(s)	43, 139
AspLEI	GCGC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	439
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	212, 273
BfaI	CTAG	2 cut(s)	254, 317
BfrI	CTTAAG	1 cut(s)	518
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	3 cut(s)	9, 226, 262
BlpI	GCTNAGC	1 cut(s)	112
BlsI	GCNGC	3 cut(s)	10, 227, 263
BmiI	GGNNCC	3 cut(s)	25, 51, 338
BpiI	GAAGAC	1 cut(s)	253
Bpu1102I	GCTNAGC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 257, 429
BseDI	CCNNGG	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	155, 257, 429
BseMII	CTCAG	1 cut(s)	126
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	212, 273
BseYI	CCCAGC	1 cut(s)	393
BshFI	GGCC	1 cut(s)	524
BshNI	GGYRCC	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	439
BslI	CCNNNNNNNGG	3 cut(s)	155, 257, 429
BsnI	GGCC	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	2 cut(s)	49, 454
Bsp1720I	GCTNAGC	1 cut(s)	112
Bsp19I	CCATGG	1 cut(s)	423
BspANI	GGCC	1 cut(s)	524
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	25, 51, 338
BspPI	GGATC	2 cut(s)	44, 57
BspT107I	GGYRCC	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	2 cut(s)	49, 454
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	14
BstAFI	CTTAAG	1 cut(s)	518
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	112, 117
BstDSI	CCRYGG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	52, 457
BstMBI	GATC	2 cut(s)	49, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	212, 273
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	2 cut(s)	49, 454
BstYI	RGATCY	2 cut(s)	49, 454
BsuRI	GGCC	1 cut(s)	524
BtgI	CCRYGG	1 cut(s)	423
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	196
CviAII	CATG	1 cut(s)	424
DdeI	CTNAG	2 cut(s)	112, 117
DpnI	GATC	2 cut(s)	51, 456
DpnII	GATC	2 cut(s)	49, 454
DraI	TTTAAA	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	1 cut(s)	427
FaiI	YATR	6 cut(s)	83, 88, 414, 419, 425, 477
FalI	AAGNNNNNCTT	1 cut(s)	501
FatI	CATG	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	9, 226, 262
Fsp4HI	GCNGC	3 cut(s)	9, 226, 262
FspBI	CTAG	2 cut(s)	254, 317
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	3 cut(s)	9, 226, 262
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	524
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	427
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	3 cut(s)	42, 187, 454
Hpy188III	TCNNGA	1 cut(s)	156
Hpy8I	GTNNAC	1 cut(s)	437
HpyAV	CCTTC	2 cut(s)	193, 484
HpyCH4V	TGCA	5 cut(s)	4, 11, 137, 269, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	2 cut(s)	112, 117
Hsp92II	CATG	1 cut(s)	427
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	49, 454
LpnPI	CCDG	6 cut(s)	66, 141, 157, 242, 407, 485
Lsp1109I	GCAGC	2 cut(s)	212, 273
MaeI	CTAG	2 cut(s)	254, 317
MalI	GATC	2 cut(s)	51, 456
MboI	GATC	2 cut(s)	49, 454
MboII	GAAGA	2 cut(s)	258, 478
MflI	RGATCY	2 cut(s)	49, 454
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	3 cut(s)	43, 139, 212
MnlI	CCTC	5 cut(s)	38, 70, 214, 261, 487
MseI	TTAA	2 cut(s)	177, 519
MspCI	CTTAAG	1 cut(s)	518
MwoI	GCNNNNNNNGC	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	2 cut(s)	49, 454
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	3 cut(s)	25, 51, 338
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	3 cut(s)	10, 227, 263
PspFI	CCCAGC	1 cut(s)	393
PspN4I	GGNNCC	3 cut(s)	25, 51, 338
PsuI	RGATCY	2 cut(s)	49, 454
SaqAI	TTAA	2 cut(s)	177, 519
SatI	GCNGC	3 cut(s)	9, 226, 262
Sau3AI	GATC	2 cut(s)	49, 454
SduI	GDGCHC	1 cut(s)	439
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	43, 139, 212
SspMI	CTAG	2 cut(s)	254, 317
StyI	CCWWGG	1 cut(s)	423
TasI	AATT	3 cut(s)	43, 139, 212
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	177, 519
Tru9I	TTAA	2 cut(s)	177, 519
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	3 cut(s)	8, 225, 261
TspDTI	ATGAA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	429
Vha464I	CTTAAG	1 cut(s)	518
VneI	GTGCAC	1 cut(s)	435
XapI	RAATTY	2 cut(s)	43, 139
XspI	CTAG	2 cut(s)	254, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.